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The following two resources are my recommendations for people who are relatively new to UNIX, or want a refresher. They are shorter and more focused than my workshop, Introduction to Remote Computing (which I also recommend, and which comes with videos - the UNIX-y bits are the first two lectures).
Please let me know at [email protected] if you run into any problems.
Author: Mike Lee, International Man of Mystery
UNIX crash course: link
To get started with these, start up RStudio via https://ondemand.farm.hpc.ucdavis.edu/ (you can usually use the default settings - but high2, 2 cores, and 5 GB of RAM should be enough!)
Once RStudio is running, select the Terminal tab in the Console area, and you'll be at a shell prompt where you can run the tutorial commands.
At this point, go to Getting Started: A Few Foundational Rules and start there!
I suggest going through at least the first two tutorials & completing "Working with files and directories", although you should skim "Redirectors and wildcards" if you can.
Author: Hannah Houts, UC Davis, MGG Grad Group
This is an introductory tutorial for RStudio, RMarkdown, UNIX shell, and R.
Go here and follow the directions!