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new module: DoRothEA #3085

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pinin4fjords opened this issue Mar 24, 2023 · 5 comments · May be fixed by #5266
Closed
4 tasks done

new module: DoRothEA #3085

pinin4fjords opened this issue Mar 24, 2023 · 5 comments · May be fixed by #5266
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new module Adding a new module

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pinin4fjords commented Mar 24, 2023 •
edited by Bisho2122
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Is there an existing module for this?

  • I have searched for the existing module

Is there an open PR for this?

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Is there an open issue for this?

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Are you going to work on this?

  • If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module
@pinin4fjords pinin4fjords added the new module Adding a new module label Mar 24, 2023
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pinin4fjords commented Mar 24, 2023 •
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As suggested by @grst see nf-core/differentialabundance#99

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Could follow temlate-driven implementation pattern used in deseq2/differerential etc

@Bisho2122 Bisho2122 self-assigned this Mar 18, 2024
@Bisho2122 Bisho2122 moved this to In progress in Hackathon: May 2024 Mar 18, 2024
@Bisho2122 Bisho2122 linked a pull request Mar 19, 2024 that will close this issue
Dorothea/differentialabundance #5266
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@Bisho2122 Bisho2122 mentioned this issue Mar 19, 2024
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grst commented Jul 29, 2024

I suggest to close this and implement decoupleR/decoupler-py which is now recommended by the Saezlab and is more generic (i.e. decoupler is the method for testing gene sets, while Dorothea is just one of many reference databases)

@grst grst closed this as completed Jul 29, 2024
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Like this?

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grst commented Aug 6, 2024

exactly :)

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new module Adding a new module
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Hackathon: May 2024
Status: In progress
Hackathon: November 2023
Status: No status
nf-core Hackathon March 2023
Status: Todo
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Dorothea/differentialabundance Bisho2122/modules
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