From 9c37367efa416482509268deb2ecdf60737f4e9a Mon Sep 17 00:00:00 2001 From: nschcolnicov Date: Thu, 26 Dec 2024 19:27:28 +0000 Subject: [PATCH] Remove dumps --- workflows/differentialabundance.nf | 7 ------- 1 file changed, 7 deletions(-) diff --git a/workflows/differentialabundance.nf b/workflows/differentialabundance.nf index a9e0d3ab..707395dc 100644 --- a/workflows/differentialabundance.nf +++ b/workflows/differentialabundance.nf @@ -317,11 +317,6 @@ workflow DIFFERENTIALABUNDANCE { ch_matrices_for_validation = ch_in_raw } - - ch_input.join(ch_matrices_for_validation).dump(tag:"VALIDATOR_ch_input") - ch_features.dump(tag:"VALIDATOR_ch_features") - ch_contrasts_file.dump(tag:"VALIDATOR_ch_contrasts_file") - VALIDATOR( ch_input.join(ch_matrices_for_validation), ch_features, @@ -574,8 +569,6 @@ workflow DIFFERENTIALABUNDANCE { ) // Differential analysis using the results of DESeq2 - ch_differential.dump(tag:"PLOT_DIFFERENTIAL_ch_differential") - ch_all_matrices.dump(tag:"PLOT_DIFFERENTIAL_ch_all_matrices") PLOT_DIFFERENTIAL( ch_differential,