From bddaca3e32e98535626053afe627bbb64852e36a Mon Sep 17 00:00:00 2001 From: Nicolas Vannieuwkerke Date: Mon, 15 Jan 2024 09:38:29 +0100 Subject: [PATCH] update changelog --- CHANGELOG.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a8900702..611b929a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v1.4.1dev [date] +## v1.4.1 - Lively Leuven - [January 15 2024] ### New Features @@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 2. Implemented files for the alphamissense plugin of VEP. 3. Added the `--only_pass` parameter to only output variants that have the `PASS` flag in the FILTER column. (This is only applied when `--filter` is also given) 4. Added the `--keep_alt_contigs` parameter. This will tell the pipeline to not filter out the alternate contigs, which will now be done by default. +5. Add dbsnp Ids to VCFs coming from vardict. This will be done automatically if a dbsnp VCF is given to the pipeline through the `--dbsnp` parameter. ### Improvements @@ -18,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 2. Changed the separator in `--vcfanno_resources` to `;` instead of `,` to allow commas in glob patterns. 3. Removed the reheader step from the vardict subworkflow and added a simple sed substitution to the vardictjava module +4. `vcf2db` now uses a python 2 environment to increase it's stability ## v1.4.0 - Kingly Kortrijk - [December 6 2023]