From 523c7a960bff3b795d139d8cca9d97ee25846902 Mon Sep 17 00:00:00 2001
From: Nicolas Vannieuwkerke <101190534+nvnieuwk@users.noreply.github.com>
Date: Thu, 12 Dec 2024 14:56:41 +0100
Subject: [PATCH] add updio and automap to wes profile (#248)

* add updio and automap to wes profile

* update changelog
---
 CHANGELOG.md    | 2 +-
 conf/wes.config | 2 ++
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 5d11849d..70e12564 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -20,7 +20,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 5. Bumped the minimal Nextflow version to 24.10.0.
 6. Added the somalier reports to the multiQC report.
 7. Removed the `--output_suffix` parameter
-8. Added some missing required paths to the `WES` and `seqplorer` profiles
+8. Added some missing required parameters to the `WES` and `seqplorer` profiles
 
 ### Fixes
 
diff --git a/conf/wes.config b/conf/wes.config
index 9cbbee36..41e693c1 100644
--- a/conf/wes.config
+++ b/conf/wes.config
@@ -8,4 +8,6 @@ params {
     callers             = "haplotypecaller"
     scatter_count       = 8
     roi                 = "${params.genomes_base}/Hsapiens/GRCh38/regions/CMGG_WES_analysis_ROI_v5.bed"
+    updio               = true
+    automap             = true
 }