diff --git a/modules/nf-core/vcf2db/tests/main.nf.test b/modules/nf-core/vcf2db/tests/main.nf.test index 9532b432..bc1dd176 100644 --- a/modules/nf-core/vcf2db/tests/main.nf.test +++ b/modules/nf-core/vcf2db/tests/main.nf.test @@ -14,7 +14,7 @@ nextflow_process { process { """ input[0] = [ - [ id:'test', single_end:false ], // meta map + [ id:'test', single_end:false, caller:"haplotypecaller" ], // meta map file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky_minimal.vcf.gz', checkIfExists: true), file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky.ped', checkIfExists: true) ] @@ -43,7 +43,7 @@ nextflow_process { process { """ input[0] = [ - [ id:'test', single_end:false ], // meta map + [ id:'test', single_end:false, caller:"haplotypecaller" ], // meta map file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky_minimal.vcf.gz', checkIfExists: true), file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky.ped', checkIfExists: true) ] diff --git a/modules/nf-core/vcf2db/tests/main.nf.test.snap b/modules/nf-core/vcf2db/tests/main.nf.test.snap index 5e29c6ba..2454b614 100644 --- a/modules/nf-core/vcf2db/tests/main.nf.test.snap +++ b/modules/nf-core/vcf2db/tests/main.nf.test.snap @@ -6,9 +6,10 @@ [ { "id": "test", - "single_end": false + "single_end": false, + "caller": "haplotypecaller" }, - "test.db:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.haplotypecaller.db:md5,d41d8cd98f00b204e9800998ecf8427e" ] ], "1": [ @@ -18,9 +19,10 @@ [ { "id": "test", - "single_end": false + "single_end": false, + "caller": "haplotypecaller" }, - "test.db:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.haplotypecaller.db:md5,d41d8cd98f00b204e9800998ecf8427e" ] ], "versions": [ @@ -29,22 +31,22 @@ } ], "meta": { - "nf-test": "0.8.4", - "nextflow": "24.04.3" + "nf-test": "0.9.1", + "nextflow": "24.10.0" }, - "timestamp": "2024-01-10T16:13:32.293507403" + "timestamp": "2024-11-19T14:40:53.107217359" }, "homo_sapiens - vcf, ped": { "content": [ - "test.db", + "test.haplotypecaller.db", [ "versions.yml:md5,3d9eedf7998cb77b614736659eb22b1d" ] ], "meta": { - "nf-test": "0.8.4", - "nextflow": "24.04.3" + "nf-test": "0.9.1", + "nextflow": "24.10.0" }, - "timestamp": "2024-08-06T10:27:06.932652" + "timestamp": "2024-11-19T14:40:45.633504872" } } \ No newline at end of file diff --git a/modules/nf-core/vcf2db/vcf2db.diff b/modules/nf-core/vcf2db/vcf2db.diff index 45757135..46aa314a 100644 --- a/modules/nf-core/vcf2db/vcf2db.diff +++ b/modules/nf-core/vcf2db/vcf2db.diff @@ -1,6 +1,4 @@ Changes in module 'nf-core/vcf2db' -'modules/nf-core/vcf2db/environment.yml' is unchanged -'modules/nf-core/vcf2db/meta.yml' is unchanged Changes in 'vcf2db/main.nf': --- modules/nf-core/vcf2db/main.nf +++ modules/nf-core/vcf2db/main.nf @@ -13,7 +11,88 @@ Changes in 'vcf2db/main.nf': // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions. conda "${moduleDir}/environment.yml" -'modules/nf-core/vcf2db/tests/main.nf.test.snap' is unchanged +'modules/nf-core/vcf2db/environment.yml' is unchanged +'modules/nf-core/vcf2db/meta.yml' is unchanged 'modules/nf-core/vcf2db/tests/tags.yml' is unchanged -'modules/nf-core/vcf2db/tests/main.nf.test' is unchanged +Changes in 'vcf2db/tests/main.nf.test': +--- modules/nf-core/vcf2db/tests/main.nf.test ++++ modules/nf-core/vcf2db/tests/main.nf.test +@@ -14,7 +14,7 @@ + process { + """ + input[0] = [ +- [ id:'test', single_end:false ], // meta map ++ [ id:'test', single_end:false, caller:"haplotypecaller" ], // meta map + file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky_minimal.vcf.gz', checkIfExists: true), + file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky.ped', checkIfExists: true) + ] +@@ -43,7 +43,7 @@ + process { + """ + input[0] = [ +- [ id:'test', single_end:false ], // meta map ++ [ id:'test', single_end:false, caller:"haplotypecaller" ], // meta map + file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky_minimal.vcf.gz', checkIfExists: true), + file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/vcf/ped/justhusky.ped', checkIfExists: true) + ] + +Changes in 'vcf2db/tests/main.nf.test.snap': +--- modules/nf-core/vcf2db/tests/main.nf.test.snap ++++ modules/nf-core/vcf2db/tests/main.nf.test.snap +@@ -6,9 +6,10 @@ + [ + { + "id": "test", +- "single_end": false ++ "single_end": false, ++ "caller": "haplotypecaller" + }, +- "test.db:md5,d41d8cd98f00b204e9800998ecf8427e" ++ "test.haplotypecaller.db:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ], + "1": [ +@@ -18,9 +19,10 @@ + [ + { + "id": "test", +- "single_end": false ++ "single_end": false, ++ "caller": "haplotypecaller" + }, +- "test.db:md5,d41d8cd98f00b204e9800998ecf8427e" ++ "test.haplotypecaller.db:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ], + "versions": [ +@@ -29,22 +31,22 @@ + } + ], + "meta": { +- "nf-test": "0.8.4", +- "nextflow": "24.04.3" ++ "nf-test": "0.9.1", ++ "nextflow": "24.10.0" + }, +- "timestamp": "2024-01-10T16:13:32.293507403" ++ "timestamp": "2024-11-19T14:40:53.107217359" + }, + "homo_sapiens - vcf, ped": { + "content": [ +- "test.db", ++ "test.haplotypecaller.db", + [ + "versions.yml:md5,3d9eedf7998cb77b614736659eb22b1d" + ] + ], + "meta": { +- "nf-test": "0.8.4", +- "nextflow": "24.04.3" ++ "nf-test": "0.9.1", ++ "nextflow": "24.10.0" + }, +- "timestamp": "2024-08-06T10:27:06.932652" ++ "timestamp": "2024-11-19T14:40:45.633504872" + } + } ************************************************************