diff --git a/docs/databases.rst b/docs/databases.rst index a28db18..aeea24a 100644 --- a/docs/databases.rst +++ b/docs/databases.rst @@ -32,16 +32,16 @@ This will download and format the databases, they can be displayed like so: Funannotate Databases currently installed: Database Type Version Date Num_Records Md5checksum - pfam hmmer3 32.0 2018-08 17929 de7496fad69c1040fd74db1cb5eef0fc - gene2product text 1.45 2019-07-31 30103 657bb30cf3247fcb74ca4f51a4ab7c18 - interpro xml 76.0 2019-09-18 37113 328f66a791f9866783764f24a74a5aa3 - dbCAN hmmer3 8.0 2019-08-08 607 51c724c1f9ac45687f08d0faa689ed58 - busco_outgroups outgroups 1.0 2019-10-20 7 6795b1d4545850a4226829c7ae8ef058 - merops diamond 12.0 2017-10-04 5009 a6dd76907896708f3ca5335f58560356 - mibig diamond 1.4 2019-10-20 31023 118f2c11edde36c81bdea030a0228492 - uniprot diamond 2019_09 2019-10-16 561176 9fc7871b8c4e3b755fe2086d77ed0645 - go text 2019-10-07 2019-10-07 47375 3bc9ba43a98bf8fcd01db6e7e7813dd2 - repeats diamond 1.0 2019-10-20 11950 4e8cafc3eea47ec7ba505bb1e3465d21 + merops diamond 12.5 2023-01-19 5098 6cd3c3dd85650394ce4e3dacb591f2a5 + uniprot diamond 2024_01 2024-01-24 570830 c7507ea16b3c4807971c663994cad329 + dbCAN hmmer3 11.0 2022-08-09 699 fb112af319a5001fbf547eac29e7c3b5 + pfam hmmer3 36.0 2023-07 20795 0725495ccf049a4f198fcc0a92f7f38c + repeats diamond 1.0 2022-03-13 11950 4e8cafc3eea47ec7ba505bb1e3465d21 + go text 2024-01-17 2024-01-17 47729 7e6b9974184dda306e6e07631f1783af + mibig diamond 1.4 2022-03-13 31023 118f2c11edde36c81bdea030a0228492 + interpro xml 98.0 2024-01-25 40768 502ea05009761b893dedb56d5ea89c48 + busco_outgroups outgroups 1.0 2024-03-04 8 6795b1d4545850a4226829c7ae8ef058 + gene2product text 1.92 2023-10-02 34459 32a4a80987720e0872377de3207dc0f5 To update a database type: funannotate setup -i DBNAME -d $HOME/funannotate_db --force