From 748505ec2215880e10999442512949ec21acdaa0 Mon Sep 17 00:00:00 2001
From: Nicholas Lee <niconal902@gmail.com>
Date: Tue, 1 Oct 2024 15:50:28 -0400
Subject: [PATCH] feat: add integration tests for specification wizard

---
 .../CreateSpecificationDialog.cy.tsx          | 49 +++++++++++++++++++
 ...MetaAnalysisSpecificationAlgorithmStep.tsx |  2 +-
 ...ateMetaAnalysisSpecificationDialogBase.tsx | 29 +++++++----
 ...etaAnalysisSpecificationDialogConstants.ts |  9 ++--
 ...MetaAnalysisSpecificationSelectionStep.tsx |  4 +-
 5 files changed, 76 insertions(+), 17 deletions(-)

diff --git a/compose/neurosynth-frontend/cypress/e2e/workflows/MetaAnalyses/CreateSpecificationDialog.cy.tsx b/compose/neurosynth-frontend/cypress/e2e/workflows/MetaAnalyses/CreateSpecificationDialog.cy.tsx
index 7e42430c..a2edb04a 100644
--- a/compose/neurosynth-frontend/cypress/e2e/workflows/MetaAnalyses/CreateSpecificationDialog.cy.tsx
+++ b/compose/neurosynth-frontend/cypress/e2e/workflows/MetaAnalyses/CreateSpecificationDialog.cy.tsx
@@ -14,6 +14,9 @@ describe('CreateSpecificationDialog', () => {
             fixture: 'projects/projectCanCreateSpecification',
         }).as('projectFixture');
         cy.intercept('GET', `**/api/studysets/*`, { fixture: 'studyset' }).as('studysetFixture');
+        cy.intercept('GET', '**/api/annotations/*', { fixture: 'annotation' }).as(
+            'annotationFixture'
+        );
     });
 
     it('should show the dialog', () => {
@@ -23,5 +26,51 @@ describe('CreateSpecificationDialog', () => {
         cy.contains('button', 'Meta-Analyses').click();
         cy.contains('button', 'Meta-Analysis Specification').click();
         cy.get('.MuiDialog-container').should('be.visible');
+        cy.contains('button', 'Back').should('be.disabled');
+    });
+
+    it('should set the default specification values', () => {
+        cy.login('mocked', { sub: 'github|26612023' })
+            .visit('/projects/abc123')
+            .wait('@projectFixture');
+        cy.contains('button', 'Meta-Analyses').click();
+        cy.contains('button', 'Meta-Analysis Specification').click();
+        cy.get('.MuiDialog-container').should('be.visible');
+        cy.contains('MKDADensity').should('exist');
+        cy.contains('FDRCorrector').should('exist');
+    });
+
+    it.only('should step through the wizard', () => {
+        cy.intercept('POST', '**/api/specifications', {
+            id: 'mockedSpecificationId',
+        }).as('createSpecificationFixture');
+        cy.intercept('POST', '**/api/studysets', {
+            id: 'mockedStudySetId',
+        });
+        cy.intercept('POST', '**/api/annotations', {
+            id: 'mockedAnnotationId',
+        });
+        cy.intercept('POST', '**/api/meta-analyses', {
+            id: 'mockedMetaAnalysisId',
+            specification: {},
+        });
+        cy.intercept('GET', '**/api/specifications/*', {
+            fixture: 'specification',
+        });
+
+        cy.intercept('GET', '**/api/meta-analyses/mockedMetaAnalysisId*', {
+            fixture: 'metaAnalysis',
+        }).as('metaAnalysesFixture');
+
+        cy.login('mocked', { sub: 'github|26612023' })
+            .visit('/projects/abc123')
+            .wait('@projectFixture');
+        cy.contains('button', 'Meta-Analyses').click();
+        cy.contains('button', 'Meta-Analysis Specification').click();
+        cy.contains('Next').click();
+        cy.contains('included').should('exist');
+        cy.contains('button', 'Next').click();
+        cy.contains('button', 'Next').click();
+        cy.contains('button', 'Create Meta-Analysis Specification').click();
     });
 });
diff --git a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationAlgorithmStep.tsx b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationAlgorithmStep.tsx
index b4af1853..4170d7c6 100644
--- a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationAlgorithmStep.tsx
+++ b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationAlgorithmStep.tsx
@@ -36,7 +36,7 @@ const CreateMetaAnalysisSpecificationAlgorithmStep: React.FC<{
                 algorithm={algorithmSpec}
                 onSelectSpecification={(update) => setAlgorithmSpec(update)}
             />
-            <Box sx={{ width: '100$%', marginTop: '1rem' }}>
+            <Box sx={{ marginTop: '1rem' }}>
                 <NavigationButtons
                     nextButtonDisabled={!algorithmSpec.estimator}
                     nextButtonStyle="contained"
diff --git a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogBase.tsx b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogBase.tsx
index a86beed2..3e3610bc 100644
--- a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogBase.tsx
+++ b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogBase.tsx
@@ -16,8 +16,8 @@ import CreateMetaAnalysisSpecificationReview from 'pages/MetaAnalysis/components
 import CreateMetaAnalysisSpecificationSelectionStep from 'pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationSelectionStep';
 import {
     getDefaultValuesForTypeAndParameter,
-    correctorOpt,
-    algorithmOpt,
+    correctorDefaultOption,
+    algorithmDefaultOption,
 } from './CreateMetaAnalysisSpecificationDialogConstants';
 
 const CreateMetaAnalysisSpecificationDialogBase: React.FC<IDialog> = (props) => {
@@ -35,10 +35,16 @@ const CreateMetaAnalysisSpecificationDialogBase: React.FC<IDialog> = (props) =>
         referenceDataset: undefined,
     });
     const [algorithm, setAlgorithm] = useState<IAlgorithmSelection>({
-        estimator: algorithmOpt,
-        estimatorArgs: getDefaultValuesForTypeAndParameter(EAnalysisType.CBMA, algorithmOpt?.label),
-        corrector: correctorOpt,
-        correctorArgs: getDefaultValuesForTypeAndParameter('CORRECTOR', correctorOpt?.label),
+        estimator: algorithmDefaultOption,
+        estimatorArgs: getDefaultValuesForTypeAndParameter(
+            EAnalysisType.CBMA,
+            algorithmDefaultOption?.label
+        ),
+        corrector: correctorDefaultOption,
+        correctorArgs: getDefaultValuesForTypeAndParameter(
+            'CORRECTOR',
+            correctorDefaultOption?.label
+        ),
     });
 
     useEffect(() => {
@@ -52,13 +58,16 @@ const CreateMetaAnalysisSpecificationDialogBase: React.FC<IDialog> = (props) =>
         props.onCloseDialog();
         setActiveStep(0);
         setAlgorithm({
-            estimator: algorithmOpt,
+            estimator: algorithmDefaultOption,
             estimatorArgs: getDefaultValuesForTypeAndParameter(
                 EAnalysisType.CBMA,
-                algorithmOpt?.label
+                algorithmDefaultOption?.label
+            ),
+            corrector: correctorDefaultOption,
+            correctorArgs: getDefaultValuesForTypeAndParameter(
+                'CORRECTOR',
+                correctorDefaultOption?.label
             ),
-            corrector: correctorOpt,
-            correctorArgs: getDefaultValuesForTypeAndParameter('CORRECTOR', correctorOpt?.label),
         });
         setSelection({
             selectionKey: undefined,
diff --git a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogConstants.ts b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogConstants.ts
index b1d95a8e..6f1a3162 100644
--- a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogConstants.ts
+++ b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationDialogConstants.ts
@@ -63,15 +63,16 @@ const correctorOptions: IAutocompleteObject[] = Object.keys(
     description: metaAnalysisSpecification.CORRECTOR[corrector]?.summary,
 }));
 
-const correctorOpt =
+const correctorDefaultOption =
     correctorOptions.find((corrector) => corrector.label === 'FDRCorrector') || null;
-const algorithmOpt = metaAnalyticAlgorithms.find((algo) => algo.label === 'MKDADensity') || null;
+const algorithmDefaultOption =
+    metaAnalyticAlgorithms.find((algo) => algo.label === 'MKDADensity') || null;
 
 export {
     getDefaultValuesForTypeAndParameter,
     metaAnalysisSpecification,
     metaAnalyticAlgorithms,
     correctorOptions,
-    correctorOpt,
-    algorithmOpt,
+    correctorDefaultOption,
+    algorithmDefaultOption,
 };
diff --git a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationSelectionStep.tsx b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationSelectionStep.tsx
index cb911682..0aa2c468 100644
--- a/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationSelectionStep.tsx
+++ b/compose/neurosynth-frontend/src/pages/MetaAnalysis/components/CreateMetaAnalysisSpecificationSelectionStep.tsx
@@ -98,7 +98,7 @@ const CreateMetaAnalysisSpecificationSelectionStep: React.FC<{
                         onClick={() => handleNavigate(ENavigationButton.PREV)}
                         variant="outlined"
                     >
-                        back
+                        Back
                     </Button>
                     <SelectAnalysesSummaryComponent
                         annotationdId={annotationId || ''}
@@ -114,7 +114,7 @@ const CreateMetaAnalysisSpecificationSelectionStep: React.FC<{
                         }
                         onClick={() => handleNavigate(ENavigationButton.NEXT)}
                     >
-                        next
+                        Next
                     </Button>
                 </Box>
             </Box>