From 3043c93d5524a01a19575b0abb6a2a3505cdf919 Mon Sep 17 00:00:00 2001
From: sapetnioc <sapetnioc@users.noreply.github.com>
Date: Mon, 4 Nov 2024 18:02:24 +0100
Subject: [PATCH] Added scripts and doc for testing website with Pixi

---
 .gitignore        |  3 +++
 README.md         | 39 +++++++++++++++++++++++++--------------
 neurospin_gaia.sh | 15 +++++++++++++++
 pixi.toml         | 19 +++++++++++++++++++
 4 files changed, 62 insertions(+), 14 deletions(-)
 create mode 100644 neurospin_gaia.sh
 create mode 100644 pixi.toml

diff --git a/.gitignore b/.gitignore
index 1d64750..d3afcc8 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,3 +4,6 @@ _site/
 .jekyll-metadata
 .~
 Gemfile*
+.pixi
+pixi.lock
+
diff --git a/README.md b/README.md
index 3b26387..386fa46 100644
--- a/README.md
+++ b/README.md
@@ -45,28 +45,39 @@ Please look at the example and use the same keys.
 
 Note: For the research collection, you will have to add a new `research_<CATEGORY>.md` for new categories.
 
-# Local Install
+# Test website modification locally
 
-Jekyll:
+First install pixi : [https://pixi.sh](https://pixi.sh)
 
+Then install the website design environment with the following command:
+
+```
+git clone https://github.com/neurospin/gaia
 ```
-sudo apt install ruby-dev
-echo '# Install Ruby Gems to ~/gems' >> ~/.bashrc
-echo 'export GEM_HOME="$HOME/gems"' >> ~/.bashrc
-echo 'export PATH="$HOME/gems/bin:$PATH"' >> ~/.bashrc
-source ~/.bashrc
-gem install jekyll bundler
-cd $MYPROJECT
-bundle init
-bundle add jekyll webrick
-bundle install
+
+Then the web server can be run from the git source directory with the following command:
+
+```
+cd gaia
+pixi run gaia-website
+```
+
+The first execution will take time to install requirements. The website can be seen using the following URL in a browser : [https://localhost:8080](https://localhost:8080).
+
+To get more options on the web server (for instance changing the port number), one can use:
+
+```
+cd gaia
+pixi shell
 bundle exec jekyll serve --livereload --port 8080
 ```
 
+
 For Bibtex conversion:
 
-- pip install pybtex
-- pybtex-convert biblio.bib biblio.yaml
+```
+pybtex-convert biblio.bib biblio.yaml
+```
 
 # Jekyll
 
diff --git a/neurospin_gaia.sh b/neurospin_gaia.sh
new file mode 100644
index 0000000..b37d40a
--- /dev/null
+++ b/neurospin_gaia.sh
@@ -0,0 +1,15 @@
+if [ ! -e "$CONDA_PREFIX/share/rubygems/bin/ruby" ]; then
+    mkdir -p "$CONDA_PREFIX/share/rubygems/bin"
+    ln -s "$CONDA_PREFIX/bin/ruby" "$CONDA_PREFIX/share/rubygems/bin/ruby"
+fi
+
+if [ ! -e "$CONDA_PREFIX/share/rubygems/bin/bundler" ]; then
+    gem install jekyll bundler csv base64
+fi
+
+if [ ! -e "$PIXI_PROJECT_ROOT/Gemfile" ]; then
+    cd "$PIXI_PROJECT_ROOT"
+    bundle init
+    bundle add jekyll webrick
+    bundle install
+fi
diff --git a/pixi.toml b/pixi.toml
new file mode 100644
index 0000000..edbde59
--- /dev/null
+++ b/pixi.toml
@@ -0,0 +1,19 @@
+[project]
+channels = ["conda-forge"]
+description = "Neurospin/Baobab/GAIA website"
+name = "neurospin_gaia"
+platforms = ["linux-64"]
+version = "0.1.0"
+
+[tasks]
+gaia-website = { cmd="bundle exec jekyll serve --livereload --port 8080"}
+
+[dependencies]
+ruby = ">=3.3.3,<4"
+gcc = ">=14.1.0,<15"
+gxx = ">=14.1.0,<15"
+pybtex = ">=0.24.0,<0.25"
+gfortran = ">=14.1.0,<15"
+
+[activation]
+scripts = ["neurospin_gaia.sh"]
\ No newline at end of file