diff --git a/hsf/factory.py b/hsf/factory.py index f906943..737436f 100644 --- a/hsf/factory.py +++ b/hsf/factory.py @@ -5,7 +5,6 @@ import ants import hydra import torch -# from hydra import compose, initialize from omegaconf import DictConfig from rich.logging import RichHandler from roiloc.locator import RoiLocator @@ -28,8 +27,6 @@ log = logging.getLogger(__name__) -# initialize(config_path="hsf/conf") -# cfg = compose(config_name="config") def get_lr_hippocampi(mri: PosixPath, cfg: DictConfig) -> tuple: diff --git a/hsf/segment.py b/hsf/segment.py index fab830c..ed0e200 100644 --- a/hsf/segment.py +++ b/hsf/segment.py @@ -27,7 +27,6 @@ def mri_to_subject(mri: PosixPath) -> tio.Subject: subject = tio.Subject(mri=tio.ScalarImage(mri)) preprocessing_pipeline = tio.Compose([ - # tio.ToCanonical(), tio.ZNormalization(), tio.EnsureShapeMultiple(8), ])