diff --git a/pyproject.toml b/pyproject.toml
index a9d5d73..c3013a9 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -7,10 +7,9 @@ requires-python = ">=3.9.0"
 dynamic = ["version"]
 
 dependencies = [
-  "datashuttle",
-  "setuptools_scm",
   "numpy",
-  "submitit",
+  "snakemake",
+  "snakemake-executor-plugin-slurm",
 ]
 
 license = {text = "BSD-3-Clause"}