diff --git a/docs/source/conf.py b/docs/source/conf.py index b76fdea..35d79a9 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -61,7 +61,7 @@ "substitution", "tasklist", ] -# Automatically add achors to markdown headings +# Automatically add anchors to markdown headings myst_heading_anchors = 3 # Add any paths that contain templates here, relative to this directory. diff --git a/docs/source/roadmaps/may-2024.md b/docs/source/roadmaps/may-2024.md index 7fb8da5..6355cf7 100644 --- a/docs/source/roadmaps/may-2024.md +++ b/docs/source/roadmaps/may-2024.md @@ -1,6 +1,18 @@ # May 2024 -This roadmap is split into "themes" which roughly mirror our current priorities. +One of our main goals in the team is to provide fully integrated, automated analysis tools for systems neuroscience +data. As a researcher, this would mean providing only a set of configurations before running the analysis for an entire +dataset, with results and quality metrics output for checking. This will avoid researchers needing to write +custom preprocessing and analysis scripts that often duplicate existing efforts, and allows researchers to work +together on community tools. + +This is a long-term goal, and we are working across multiple themes towards achieving this. We are ensuring [data is +organised in a standard way](data_management), a critical step towards automation. Currently, we are focused on +building pipelines for [behaviour](behaviour), [electrophysiology](electrophysiology) and [anatomy](anatomy) data that +can ingest data from various acquisition systems into a common interface. These are critical steps towards the +longer-term goal of multimodal integration. The detailed roadmap is split into these themes below. + +(data_management)= ## Data management **Current status** @@ -21,6 +33,7 @@ Support for customising data structure (e.g. specific mandatory elements or new Export of NeuroBlueprint projects to [Neurodata Without Borders](https://www.nwb.org/) format. +(behaviour)= ## Behavioural analysis **Current status** @@ -38,6 +51,7 @@ data. For more details on this specific project, see the [movement roadmap](http - A common interface to prevalent pose estimation tools, and other machine-learning based object detection methods - A common interface to methods for behavioural segmentation and classification +(electrophysiology)= ## Extracellular electrophysiology analysis **Current status** @@ -52,6 +66,7 @@ electrophysiology analysis. For more details on this specific project, see the - Support for single experiments and complex multi-animal, multi-session datasets (by reading and writing to [NeuroBlueprint](https://neuroblueprint.neuroinformatics.dev/) format) +(anatomy)= ## Computational anatomy **Current status**