-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathreferences.html
371 lines (360 loc) · 37.9 KB
/
references.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
<!doctype html>
<html>
<head>
<!-- favicon -->
<link rel="apple-touch-icon" sizes="57x57" href="apple-icon-57x57.png">
<link rel="apple-touch-icon" sizes="60x60" href="apple-icon-60x60.png">
<link rel="apple-touch-icon" sizes="72x72" href="apple-icon-72x72.png">
<link rel="apple-touch-icon" sizes="76x76" href="/apple-icon-76x76.png">
<link rel="apple-touch-icon" sizes="114x114" href="apple-icon-114x114.png">
<link rel="apple-touch-icon" sizes="120x120" href="apple-icon-120x120.png">
<link rel="apple-touch-icon" sizes="144x144" href="apple-icon-144x144.png">
<link rel="apple-touch-icon" sizes="152x152" href="apple-icon-152x152.png">
<link rel="apple-touch-icon" sizes="180x180" href="apple-icon-180x180.png">
<link rel="icon" type="image/png" sizes="192x192" href="android-icon-192x192.png">
<link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png">
<link rel="icon" type="image/png" sizes="96x96" href="favicon-96x96.png">
<link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png">
<link rel="manifest" href="manifest.json">
<meta name="msapplication-TileColor" content="#ffffff">
<meta name="msapplication-TileImage" content="ms-icon-144x144.png">
<meta name="theme-color" content="#ffffff">
<!-- general -->
<meta charset="utf-8">
<title>NeuroHub</title>
<meta name="viewport" content="width=device-width">
<meta name="description" content="NeuroHub - An Open Science Infrastructure for Reproducible, Collaborative, Multidisciplinary Scientific Research.">
<meta name="keywords" content="Neuro, NeuroHub, Research, Big Data, Science, Medicine, Datalad">
<meta name="author" content="Derek Lo @ 3design-dlo.com">
<link rel="stylesheet" type="text/css" href="css/styles.css" />
<link rel="stylesheet" type="text/css" href="css/nav-styles.css" />
<link rel="stylesheet" href="https://unpkg.com/aos@next/dist/aos.css" />
<link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.2/css/all.css" integrity="sha384-oS3vJWv+0UjzBfQzYUhtDYW+Pj2yciDJxpsK1OYPAYjqT085Qq/1cq5FLXAZQ7Ay" crossorigin="anonymous">
<link href="https://fonts.googleapis.com/css?family=Libre+Baskerville:400,700|Open+Sans:400,700&display=swap" rel="stylesheet">
<script src="https://code.jquery.com/jquery-1.10.2.js"></script>
<script type="text/javascript" src="js/drop-down.js"></script>
</head>
<body>
<div id="main-wrapper">
<!-- navigation -->
<nav class="site-nav">
<div class="nav-container">
<a href="index.html"><img src="images/logo-neurohub.png" class="logo bottom active" alt="NeuroHub logo"></a>
<div id="showmenu">Menu</div>
<ul id="menu" class="nav-list hide">
<li class="nav-item"><a href="#!" class="active">About</a>
<ul class="nav-dropdown">
<li><a href="about.html">About Us</a></li>
<li><a href="dashboard.html">Dashboard</a></li>
<li><a href="references.html" class="active">References</a></li>
<li><a href="acknowledgements.html">Acknowledgements</a></li>
</ul>
</li>
<li class="nav-item"><a href="tools.html">Tools</a></li>
<li class="nav-item"><a href="team.html">Team</a></li>
<li class="nav-item"><a href="events.html">Events</a></li>
<li class="nav-item"><a href="https://github.com/neurohub/neurohub_documentation/wiki">Documentation</a></li>
<li class="nav-item"><a href="portal.html">Portal</a></li>
</ul>
</div>
</nav>
<div id="prompt" title="scroll down for more info">▼</div>
<div class="content-wrapper">
<!-- technical section -->
<section class="extra-top">
<div class="section-content">
<h1 class="full-width text-center">Publications</h1>
<!-- publications -->
<div class="accordian">
<ul>
<!-- publication -->
<li class="grey-border">
<h3 class="title">
<span class="fa fa-plus"></span>
<p class="question text-center">Neurohub Technical Papers</p>
</h3>
<p class="answer">
<span class="date">2012</span><br>
<span class="reference ">
Das S, Zijdenbos AP, Vins D, Harlap J, Evans AC (2012) <cite>LORIS: A web-based data management system for multi-center studies</cite>. <strong>Front Neuroinf 5:37</strong> <a href="docs/technical/1-2012-das.pdf">read the paper</a>
</span><br>
<span class="date">2014</span><br>
<span class="reference ">
Sherif T, Rioux P, Rousseau M-E, Kassis N, Beck N, Glatard T, Adalat R, Das S, Evans AC (2014) <cite>CBRAIN: A web-based, distributed computing platform for collaborative neuroimaging research</cite>. <strong>FFront Neurosci 8: 54</strong> <a href="docs/technical/2-2014-sherif.pdf">read the paper</a>
</span><br>
<span class="reference ">
Glatard T, Rousseau M-E, Rioux P, Adalat R, Evans AC (2014) <cite>Controlling the deployment of virtual machines on clusters and clouds for scientific computing in CBRAIN</cite>. <strong>Cluster, Cloud and Grid Computing (CCGrid) 4: 384-93</strong> <a href="docs/technical/3-2014-glatard.pdf">read the paper</a>
</span><br>
<span class="reference ">
Caspers S, Moebus S, Lux S, Pundt N, Schütz H, Mühleisen TW, Gras V, Eickhoff SB, Romanzetti S, Stöcker T, Kirlangic ME, Minnerop M, Pieperhoff P, Mödder U, Das S, Evans AC, Jöckel K-H, Erbel R, Cichon S, Nöthen MM, Sturma D, Bauer A, Shah NJ, Zilles K, Amunts K (2014) <cite>1000BRAINS: studying variability of human brain ageing in a population-based German cohort</cite>. <strong>Front Aging Neurosci 6: 149</strong> <a href="docs/technical/4-2014-caspers.pdf">read the paper</a>
</span><br>
<span class="date">2015</span><br>
<span class="reference ">
Glatard T and Evans AC (2015) <cite>Classifications of computing sites to handle numerical variability</cite>. <strong>Cluster, Cloud and Grid Computing (CCGrid) 5: 863-87</strong> <a href="docs/technical/5-2015-glatard.pdf">read the paper</a>
</span><br>
<span class="reference ">
Rogers C, Kostopoulos P, McFarlane D, Mohaddes Z, Brien D, St-Georges N, Portales-Casamar E, Das S, Evans AC (2015) <cite>LORIS: Enhanced tools for data management in neurodevelopmental studies</cite>. <strong>Int J Dev Neurosci 47(A): 125</strong> <a href="docs/technical/6-2015-rogers.pdf">read the paper</a>
</span><br>
<span class="reference ">
Sherif T, Kassis N, Rousseau M-E, Adalat R, Evans AC (2015) <cite>BrainBrowser: distributed, web-based neurological data visualization</cite>. <strong>Front Neuroinf 8:89</strong> <a href="docs/technical/7-2015-sherif.pdf">read the paper</a>
</span><br>
<span class="reference ">
Glatard T, Lewis LB, Ferreira da Silva R, Adalat R, Beck N, Lepage C, Rioux P, Rousseau ME, Sherif T, Deelman E, Khalili-Mahani N, Evans AC (2015) <cite>Reproducibility of neuroimaging analyses across operating systems</cite>. <strong>Front Neuroinform 9: 12</strong> <a href="docs/technical/8-2015-glatard.pdf">read the paper</a>
</span><br>
<span class="date">2016</span><br>
<span class="reference ">
Glatard T, Das S, Adalat R, Beck N, Bernard R, Khalili-Mahani N, Rioux P, M-É Rousseau, Evans AC (2016) <cite>Nipype interfaces in CBRAIN</cite>. <strong>GigaScience 12-12</strong> <a href="docs/technical/10-2016-glatard.pdf">read the paper</a>
</span><br>
<span class="reference ">
Niso G, Rogers C, Moreau JT, Chen LY, Madjar C, Das S, Bock E, Tadel F, Evans A, Jolicoeur P, Baillet S (2016) <cite>OMEGA: The Open MEG Archive</cite>. <strong>Neuroimage 124: 1182-7</strong> <a href="docs/technical/11-2016-niso.pdf">read the paper</a>
</span><br>
<span class="reference ">
Das S, Glatard T, MacIntyre LC, Madjar C, Rogers C, Rousseau ME, Rioux P, MacFarlane D, Mohaddes Z, Gnanasekaran R, Makowski C, Kostopoulos P, Adalat R, Niso G, Moreau JT, Evans AC (2016) <cite>The MNI data-sharing and processing ecosystem</cite>. <strong>Neuroimage 124: 1188-95</strong> <a href="docs/technical/12-2016-das.pdf">read the paper</a>
</span><br>
<span class="date">2017</span><br>
<span class="reference ">
Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau M-E, Stirling J, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Khalili-Mahani N, Fonov VS, Milot S, Leppert IR, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher, A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC (2017) <cite>Cyberinfrastructure for open science at the Montreal Neurological Institute</cite>. <strong>Front Neuroinf 10: 53</strong> <a href="docs/technical/13-2017-das.pdf">read the paper</a>
</span><br>
<span class="reference ">
Glatard T, Rousseau ME,Camarasu-Pop S, Adalat R, Beck N, Das S, Da Silva RF, Khalili-Mahani N, Korkhov V, Quirion PO, Rioux P, Olabarriaga SD, Bellec P, Evans AC (2017) <cite>Software architecture to integrate workflow engines in science gateways</cite>. <strong>Future Generation Computer Systems 75: 239-55</strong> <a href="docs/technical/14-2017-glatard.pdf">read the paper</a>
</span><br>
<span class="date">2018</span><br>
<span class="reference ">
Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CG, Hayot-Sasson V, Quirion P-O, Rioux P, Rousseau M-É, Evans AC (2018) <cite>Boutiques: a flexible framework for automated application integration in computing platforms</cite>. <strong>GigaScience 7(5): 1-11</strong> <a href="docs/technical/15-2018-glatard.pdf">read the paper</a>
</span><br>
<span class="reference ">
Dyke SOM, Linden M, Lappalainen I, De Argila JR, Carey K, Lloyd D, Spalding JD, Cabili MN, Kerry G, Foreman J, Cutts T, Shabani M, Rodriguez LL, Haeussler M, Walsh B, Jiang X, Wang S, Perrett D, Boughtwood T, Matern A, Brookes AJ, Cupak M, Fiume M, Pandya R, Tulchinsky I, Scollen S, Törnroos J, Das S, Evans AC, Malin BA, Beck S, Brenner SE, Nyrönen T, Blomberg N, Firth HV, Hurles M, Philippakis AA, Rätsch G, Brudno M, Boycott KM, Rehm HL, Baudis M, Sherry ST, Kato K, Knoppers BM, Baker D, Flicek P (2018) <cite>Registered access: authorizing data access</cite>. <strong>Eur J Hum Genet 26(12): 1721-31</strong> <a href="docs/technical/16-2018-dyke.pdf">read the paper</a>
</span><br>
<span class="reference ">
Mohaddes Z, Das S, Abou-Haidar R, Safi-Harab M, Blader D, Callegaro J, Henri-Bellmare C, Tunteng JF, Evans L, Campbell T, Lo D, Morin P-E, Whitehead V, Chertkow H, Evans AC (2018) <cite>National neuroinformatics framework for Canadian Consortium on Neurodegeneration in Aging (CCNA)</cite>. <strong>Front Neuroinf 12: 85</strong> <a href="docs/technical/17-2018-mohaddes.pdf">read the paper</a>
</span><br>
<span class="reference ">
Das S, Lecours-Boucher X, Rogers C, Chouinard-Decorte F, Klein KO, Makowski C, Beck N, Rioux P, Brown ST, Mohaddes Z, Zweber C, Foing V, Forest M, O’Donnell K, Clark J, Greenwood CMT, Meaney MJ, Evans AC (2018) <cite>Integration of “omics” data and phenotypic data within a unified extensible multimodal framework</cite>. <strong>Front Neuroinf 12: 91</strong> <a href="docs/technical/18-2018-das.pdf">read the paper</a>
</span><br>
<span class="date">2019</span><br>
<span class="reference ">
Kiar G, Brown ST, Glatard T, Evans AC (2019) <cite>A serverless tool for platform agnostic computational experiment management</cite>. <strong>Front Neuroinform 13: 12</strong> <a href="docs/technical/19-2019-kiar.pdf">read the paper</a>
</span><br>
<span class="reference ">
Chertkow H, Borrie M, Whitehead V, Black SE, Feldman HH, Gauthier S, Hogan DB, Masellis M, McGilton K, Rockwood K, Tierney MC, Andrew M, Hsiung GR, Camicioli R, Smith EE, Fogarty J, Lindsay J, Best S, Evans AC, Das S, Mohaddes Z, Pilon R, Poirier J, Phillips NA, MacNamara E, Dixon RA, Duchesne S, MacKenzie I, Rylett RJ (2019) <cite>The Comprehensive Assessment of Neurodegeneration and Dementia: Canadian Cohort Study</cite>. <strong>Can J Neurol Sci 46(5): 499-511</strong> <a href="docs/technical/20-2019-chertkow.pdf">read the paper</a>
</span><br>
<span class="date">2020</span><br>
<span class="reference ">
Pierre Rioux, Gregory Kiar, Alexandre Hutton, Alan C. Evans, and Shawn T. Brown. 2020 <cite>Deploying large fixed file datasets with SquashFS and Singularity</cite>. <strong>PEARC ’20: Practice and Experience in Advanced Research Computing</strong> <a href="https://doi.org/10.1145/3311790.3401776">read the paper</a>
</span><br>
<span class="reference ">
Bosch-Bayard JF, Aubert-Vazquez E, Brown ST, Rogers C, Kiar G, Glatard T, Scaria L, Galan L, Bringas ML, Virues-Alba T, Taheri A, Das S, Madjar C, Mohaddes Z, MacIntyre LC, Evans AC, Valdes-Sosa PA (2020) <cite>A quantitative EEG toolbox for the MNI Neuroinformatics ecosystem: normative SPM of EEG source spectra</cite>. <strong>Front Neuroinf 14: 33</strong> <a href="docs/technical/21-2020-bosch.pdf">read the paper</a>
</span><br>
<span class="reference ">
Kiar G, Castro PdeO, Rioux P, Petit E, Brown ST, Evans AC, Glatard T (2020) <cite>Comparing perturbation models for evaluating stability of post-processing pipelines in neuroimaging</cite>. <strong>Int J High Performance Comput Appl 34(5): 491-501 </strong> <a href="https://doi.org/10.1177/1094342020926237">read the paper</a> <a href="docs/technical/22-2020-kiar.pdf">read the paper (pdf)</a>
</span><br>
<span class="reference ">
Das S, Abou-Haidar R, Sun SD, Rabalais H, Rosli Z, Chatpar K, Boivin M-N, Tabatabaei M, Rogers C, Legault M, Lo D, Degroot C, Dagher A, Dyke S, Durcan T, Seyller A, Doyon J, Poupon V, Fon E, Genge A, Rouleau G, Karamchandani J, Evans AC (2020) <cite>The C-BIG Repository: An institution-level Open Science platform</cite>. <strong>Neuroinformatics</strong> <em>in press</em>
</span><br>
<span class="reference ">
Salari A, Kiar G, Lewis L, Evans AC, Glatard T (2020) <cite>File-based localization of numerical perturbations in data analysis pipelines</cite>. <strong>GigaScience</strong> <em>submitted</em> <a href="docs/technical/24-2020-salari.pdf">read the paper</a>
</span><br>
<span class="reference ">
Tremblay-Mercier J, Madjar C, Das S, Dyke SOM, Étienne P, Lafaille-Magnan M-E, Bellec P, Collins L, Rajah NM, Bohbot V, Leoutsakos J, Iturria-Medina Y, Kat J, Hoge R, Gauthier S, Chakravarty M, Rosa-Neto P, Villeneuve S, Evans AC, Poirier J, Breitner JCS, PREVENT-AD Research Group (2020) <cite>Creation of an Open Science dataset from PREVENT-AD, a longitudinal cohort study of pre-symptomatic Alzheimer’s disease</cite>. <strong>bioRxiv 976670</strong> <em>submitted</em> <a href="docs/technical/25-2020-tremblay.pdf">read the paper</a>
</span><br>
<span class="date">2021</span><br>
<span class="reference ">
Das, S., Abou-Haidar, R., Rabalais, H. et al. <cite>The C-BIG Repository: an Institution-Level Open Science Platform.</cite>. <strong>Neuroinform (2021)</strong> <a href="https://doi.org/10.1007/s12021-021-09516-9">read the paper</a>
</span><br>
</li>
<!-- research outcomes -->
<li class="grey-border">
<h3 class="title">
<span class="fa fa-plus"></span>
<p class="question text-center">Research Outcomes</p>
</h3>
<p class="answer">
<span class="date">2020</span><br>
<span class="reference ">
Acosta H, Kantojärvi K, Tuulari JJ, et al <cite>Sex-specific association between infant caudate volumes and a polygenic risk score for major depressive disorder</cite>. <strong>J Neurosci Res. 2020;98:2529–2540.</strong> <a href="https://doi.org/10.1002/jnr.24722">read the paper</a>
</span><br>
<span class="reference ">
Loraine Georgy, John D. Lewis, Gleb Bezgin, Matteo Diano, Alessia Celeghin, Alan C. Evans, Marco Tamietto, Alain Ptito <cite>Changes in peri-calcarine cortical thickness in blindsigh</cite>. <strong>Neuropsychologia, Volume 143, 2020, 107463, ISSN 0028-3932</strong> <a href="https://doi.org/10.1016/j.neuropsychologia.2020.107463">read the paper</a>
</span><br>
<span class="reference ">
Gregory Kiar, Pablo de Oliveira Castro, Pierre Rioux, Eric Petit, Shawn T Brown, Alan C Evans, Tristan Glatard <cite>Comparing perturbation models for evaluating stability of neuroimaging pipelines</cite>. <strong>The International Journal of High Performance Computing Applications</strong> <a href="https://journals.sagepub.com/doi/10.1177/1094342020926237">read the paper</a>
</span><br>
<span class="reference ">
Shahrzad Kharabian Masouleh, Simon B Eickhoff, Yashar Zeighami, Lindsay B Lewis, Robert Dahnke, Christian Gaser, Francois Chouinard-Decorte, Claude Lepage, Lianne H Scholtens, Felix Hoffstaedter, David C Glahn, John Blangero, Alan C Evans, Sarah Genon, Sofie L Valk <cite>Influence of Processing Pipeline on Cortical Thickness Measurement</cite>. <strong>Cerebral Cortex, Volume 30, Issue 9, September 2020, Pages 5014–5027</strong> <a href="https://doi.org/10.1093/cercor/bhaa097">read the paper</a>
</span><br>
<span class="reference ">
H. Acosta, J.J. Tuulari, K. Kantojärvi, J.D. Lewis, N. Hashempour, N.M. Scheinin, S.J. Lehtola, V.S. Fonov, D.L. Collins, A. Evans, R. Parkkola, T. Lähdesmäki, J. Saunavaara, H. Merisaari, L. Karlsson, T. Paunio, H. Karlsson <cite>A variation in the infant oxytocin receptor gene modulates infant hippocampal volumes in association with sex and prenatal maternal anxiety</cite>. <strong>Psychiatry Research: Neuroimaging, 2020, 111207, ISSN 0925-4927</strong> <a href="https://doi.org/10.1016/j.pscychresns.2020.111207">read the paper</a>
</span><br>
<span class="reference ">
H Acosta, K Kantojärvi, N Hashempour, J Pelto, N M Scheinin, S J Lehtola, J D Lewis, V S Fonov, D L Collins, A Evans, R Parkkola, T Lähdesmäki, J Saunavaara, L Karlsson, H Merisaari, T Paunio, H Karlsson, J J Tuulari <cite>Partial Support for an Interaction Between a Polygenic Risk Score for Major Depressive Disorder and Prenatal Maternal Depressive Symptoms on Infant Right Amygdalar Volumes</cite>. <strong>Cerebral Cortex, Volume 30, Issue 12, December 2020, Pages 6121–6134</strong> <a href="https://doi.org/10.1093/cercor/bhaa158">read the paper</a>
</span><br>
<span class="reference ">
Satu J. Lehtola, Jetro J. Tuulari, Noora M. Scheinin, Linnea Karlsson, Riitta Parkkola, Harri Merisaari, John D. Lewis, Vladimir S. Fonov, D. Louis Collins, Alan Evans, Jani Saunavaara, Niloofar Hashempour, Tuire Lähdesmäki, Henriette Acosta, Hasse Karlsson <cite>Newborn amygdalar volumes are associated with maternal prenatal psychological distress in a sex-dependent way</cite>. <strong>NeuroImage: Clinical, Volume 28, 2020, 102380, ISSN 2213-1582</strong> <a href="https://doi.org/10.1016/j.nicl.2020.102380">read the paper</a>
</span><br>
<span class="reference ">
A Salari, G Kiar, L Lewis, AC Evans, T. Glatard <cite>File-based localization of numerical perturbations in data analysis pipelines</cite>. <strong>arxiv.org</strong> <a href="https://arxiv.org/abs/2006.04684">read the paper</a>
</span><br>
<span class="reference ">
Bosch-Bayard J, Aubert-Vazquez E, Brown ST, Rogers C, Kiar G, Glatard T, Scaria L, Galan-Garcia L, Bringas-Vega ML, Virues-Alba T, Taheri A, Das S, Madjar C, Mohaddes Z, MacIntyre L, CHBMP, Evans AC and Valdes-Sosa PA (2020) <cite>A Quantitative EEG Toolbox for the MNI Neuroinformatics Ecosystem: Normative SPM of EEG Source Spectra</cite>. <strong>Front. Neuroinform. 14:33</strong> <a href="https://doi.org/10.3389/fninf.2020.00033">read the paper</a>
</span><br>
<span class="reference ">
Claude Lepage, Konrad Wagstyl, Benjamin Jung, Jakob Seidlitz, Caleb Sponheim, Leslie Ungerleider, Xindi Wang, Alan C. Evans, Adam Messinger <cite>CIVET-Macaque: an automated pipeline for MRI-based cortical surface generation and cortical thickness in macaques</cite>. <strong>bioRxiv 2020.08.04.237149</strong> <a href="https://doi.org/10.1101/2020.08.04.237149">read the paper</a>
</span><br>
<span class="reference ">
Vandewouw, MM, Young, JM, Mossad, SI, et al. <cite>Mapping the neuroanatomical impact of very preterm birth across childhood</cite>. <strong>Hum Brain Mapp. 2020; 41: 892– 905</strong> <a href="https://doi.org/10.1002/hbm.24847">read the paper</a>
</span><br>
<span class="reference ">
Pierre Besson, Todd Parrish, Aggelos K. Katsaggelos, S. Kathleen Bandt <cite>Geometric deep learning on brain shape predicts sex and age</cite>. <strong>bioRxiv 2020.06.29.177543</strong> <a href="https://doi.org/10.1101/2020.06.29.177543">read the paper</a>
</span><br>
<span class="reference ">
Pedro A. Valdes-Sosa, Lidice Galan, Jorge Bosch-Bayard, Maria L. Bringas Vega, Eduardo Aubert Vazquez, Samir Das, Trinidad Virues Alba, Cecile Madjar, Zia Mohades, Leigh C. MacIntyre, Christine Rogers, Shawn Brown, Lourdes Valdes Urrutia, Iris Rodriguez Gil, Alan C. Evans, Mitchell J. Valdes Sosa <cite>The Cuban Human Brain Mapping Project population based normative EEG, MRI, and Cognition dataset</cite>. <strong>bioRxiv 2020.07.08.194290</strong> <a href="https://doi.org/10.1101/2020.07.08.194290">read the paper</a>
</span><br>
<span class="reference ">
Budhachandra Khundrakpam, Uku Vainik, Jinnan Gong, Noor Al-Sharif, Neha Bhutani, Gregory Kiar, Yashar Zeighami, Matthias Kirschner, Cheng Luo, Alain Dagher, Alan Evans <cite>Neural correlates of polygenic risk score for autism spectrum disorders in general population</cite>. <strong>Brain Communications, Volume 2, Issue 2, 2020, fcaa092</strong> <a href="https://doi.org/10.1093/braincomms/fcaa092">read the paper</a>
</span><br>
<span class="reference ">
N. Giroud, M. K. Pichora-Fuller, P. Mick, W. Wittich, F. Al-Yawer, S. Rehan, J.B. Orange, N. A. Phillips <cite>Hearing loss is associated with gray matter differences in older adults at risk for and with Alzheimer’s disease</cite>. <strong>medRxiv 2020.10.07.20208017</strong> <a href="https://doi.org/10.1101/2020.10.07.20208017">read the paper</a>
</span><br>
<span class="reference ">
Christoph Fraenz, Dorothea Metzen, Christian J. Merz, Helene Selpien, Patrick Friedrich, Sebastian Ocklenburg, Nikolai Axmacher, Erhan Genç <cite>Fear learning sculpts functional brain connectivity at rest beyond the traditional fear network in humans</cite>. <strong>bioRxiv 2020.05.26.115840</strong> <a href="https://doi.org/10.1101/2020.05.26.115840">read the paper</a>
</span><br>
<span class="reference ">
McLachlan K, Zhou D, Little G, Rasmussen C, Pei J, Andrew G, Reynolds JN and Beaulieu C (2020) <cite>Current Socioeconomic Status Correlates With Brain Volumes in Healthy Children and Adolescents but Not in Children With Prenatal Alcohol Exposure</cite>. <strong>Front. Hum. Neurosci. 14:223</strong> <a href="https://doi.org/10.3389/fnhum.2020.00223">read the paper</a>
</span><br>
<span class="reference ">
Ellen van der Plas, T. Leigh Spencer Noakes, Darci T. Butcher, Rosanna Weksberg, Laura Galin-Corini, Elizabeth A. Wanstall, Patrick Te, Laura Hopf, Sharon Guger, Brenda J. Spiegler, Johann Hitzler, Russell J. Schachar, Shinya Ito, Brian J. Nieman <cite>Quantitative MRI outcomes in child and adolescent leukemia survivors: Evidence for global alterations in gray and white matter</cite>. <strong>NeuroImage: Clinical, Volume 28, 2020, 102428, ISSN 2213-1582</strong> <a href="https://doi.org/10.1016/j.nicl.2020.102428">read the paper</a>
</span><br>
<span class="reference ">
Nikhil Bhagwat, Amadou Barry, Erin W. Dickie, Shawn T. Brown, Gabriel A. Devenyi, Koji Hatano, Elizabeth DuPre, Alain Dagher, M. Mallar Chakravarty, Celia M. T. Greenwood, Bratislav Misic, David N. Kennedy, Jean-Baptiste Poline <cite>Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses</cite>. <strong>bioRxiv 2020.05.22.100180</strong> <a href="https://doi.org/10.1101/2020.05.22.100180">read the paper</a>
</span><br>
<span class="reference ">
Yashar Zeighami, Alan C. Evans <cite>Association versus Prediction: the impact of cortical surface smoothing and parcellation on brain age</cite>. <strong>bioRxiv 2020.11.29.403105</strong> <a href="https://doi.org/10.1101/2020.11.29.403105">read the paper</a>
</span><br>
<span class="reference ">
Christina Tremblay, Nooshin Abbasi, Yashar Zeighami, Yvonne Yau, Mahsa Dadar, Shady Rahayel, Alain Daghe <cite>Sex effects on brain structure in de novo Parkinson’s disease: a multimodal neuroimaging study</cite>. <strong>Brain, Volume 143, Issue 10, October 2020, Pages 3052–3066</strong> <a href="https://doi.org/10.1093/brain/awaa234">read the paper</a>
</span><br>
<span class="reference ">
Amadou Barry, Nikhil Bhagwat, Bratislav Misic, Jean-Baptiste Poline & Celia M. T. Greenwood (2020) <cite>Asymmetric influence measure for high dimensional regression</cite>. <strong>Communications in Statistics - Theory and Methods</strong> <a href="https://doi.org/10.1080/03610926.2020.1841793">read the paper</a>
</span><br>
<span class="reference ">
Rauh, S., Torgerson, T., Johnson, A.L. et al. <cite>Reproducible and transparent research practices in published neurology research</cite>. <strong>Res Integr Peer Rev 5, 5 (2020)</strong> <a href="https://doi.org/10.1186/s41073-020-0091-5">read the paper</a>
</span><br>
<span class="reference ">
Erlan Sanchez, Caroline Arbour, Héjar El-Khatib, Karine Marcotte, Hélène Blais, Andrée-Ann Baril, Christophe Bedetti, Maxime Descoteaux, Jean-Marc Lina, Danielle Gilbert, Julie Carrier, Nadia Gosselin <cite>Sleep spindles are resilient to extensive white matter deterioration</cite>. <strong>Brain Communications, Volume 2, Issue 2, 2020, fcaa071</strong> <a href="https://doi.org/10.1093/braincomms/fcaa071">read the paper</a>
</span><br>
<span class="reference ">
Jennifer Tremblay-Mercier, Cécile Madjar, Samir Das, Alexa Pichet Binette, Stephanie O.M. Dyke, Pierre Étienne, Marie-Elyse Lafaille-Magnan, Jordana Remz, Pierre Bellec, D. Louis Collins, M. Natasha Rajah, Veronique Bohbot, Jeannie-Marie Leoutsakos, Yasser Iturria-Medina, Justin Kat, Richard D. Hoge, Serge Gauthier, Christine L. Tardif, M. Mallar Chakravarty, Jean-Baptiste Poline, Pedro Rosa-Neto, Alan C. Evans, Sylvia Villeneuve, Judes Poirier, John C. S. Breitner, the PREVENT-AD Research Group <cite>Open Science Datasets from PREVENT-AD, a Longitudinal Cohort of Pre-symptomatic Alzheimer’s Disease</cite>. <strong>bioRxiv 2020.03.04.976670</strong> <a href="https://doi.org/10.1101/2020.03.04.976670">read the paper</a>
</span><br>
<span class="reference ">
Le Blanc, G., Jetté Pomerleau, V., McCarthy, J., Borroni, B., van Swieten, J., Galimberti, D., Sanchez‐Valle, R., LaForce, R., Jr, Moreno, F., Synofzik, M., Graff, C., Masellis, M., Tartaglia, M.C., Rowe, J.B., Vandenberghe, R., Finger, E., Tagliavini, F., de Mendonça, A., Santana, I., Butler, C., Gerhard, A., Danek, A., Levin, J., Otto, M., Frisoni, G., Sorbi, S., Rohrer, J.D., Ducharme, S. and (2020) <cite>Faster Cortical Thinning and Surface Area Loss in Presymptomatic and Symptomatic C9orf72 Repeat Expansion Adult Carriers</cite>. <strong>Ann Neurol, 88: 113-122</strong> <a href="https://doi.org/10.1002/ana.25748">read the paper</a>
</span><br>
<span class="reference ">
Navarri, X, Afzali, MH, Lavoie, J, et al. <cite>How do substance use disorders compare to other psychiatric conditions on structural brain abnormalities? A cross‐disorder meta‐analytic comparison using the ENIGMA consortium findings</cite>. <strong>Hum Brain Mapp. 2020; 1– 15</strong> <a href="https://doi.org/10.1002/hbm.25114">read the paper</a>
</span><br>
<span class="reference ">
Bells, S, Isabella, SL, Brien, DC, et al. <cite>Mapping neural dynamics underlying saccade preparation and execution and their relation to reaction time and direction errors</cite>. <strong>Hum Brain Mapp. 2020; 41: 1934– 1949</strong> <a href="https://doi.org/10.1002/hbm.24922">read the paper</a>
</span><br>
<span class="date">2021</span><br>
<span class="reference ">
Liu M, Lepage C, Kim SY, Jeon S, Kim SH, Simon JP, Tanaka N, Yuan S, Islam T, Peng B, Arutyunyan K, Surento W, Kim J, Jahanshad N, Styner MA, Toga AW, Barkovich AJ, Xu D, Evans AC and Kim H (2021) <cite>Robust Cortical Thickness Morphometry of Neonatal Brain and Systematic Evaluation Using Multi-Site MRI Datasets</cite>. <strong>Front. Neurosci. 15:650082.</strong> <a href="https://doi.org/10.3389/fnins.2021.650082">read the paper</a>
</span><br>
<span class="reference ">
Valdes-Sosa, P.A., Galan-Garcia, L., Bosch-Bayard, J. et al. <cite>The Cuban Human Brain Mapping Project, a young and middle age population-based EEG, MRI, and cognition dataset</cite>. <strong>Sci Data 8, 45 (2021)</strong> <a href="https://doi.org/10.1038/s41597-021-00829-7">read the paper</a>
</span><br>
<span class="reference ">
Jessie F. Fu, Michael Jarrett, Poljanka Johnson, Shawna Abel, Roger Tam, Alexander Rauscher, Vesna Sossi, Shannon Kolind, David Li, A. Dessa Sadovnick, Lindsay Machan, J. Marc Girard, Francois Emond, Reza Vosoughi, Anthony Traboulsee, A. Jon Stoessl <cite>Cortical morphology predicts placebo response in multiple sclerosis, Mariya V. Cherkasova</cite>. <strong>bioRxiv 825638</strong> <a href="https://doi.org/10.1101/825638">read the paper</a>
</span><br>
<span class="reference ">
Funck, Thomas. McGill University (Canada). <cite>High-Resolution Neurotransmitter Receptor Mapping: From in Vitro Autoradiography to in Vivo PET</cite>. <strong>ProQuest Dissertations Publishing, 2020. 28267147</strong> <a href="https://www.proquest.com/indexinglinkhandler/sng/au/Funck,+Thomas/">read the paper</a>
</span><br>
<span class="reference ">
Gazula et al., (2020) <cite>COINSTAC: Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation</cite>. <strong>Journal of Open Source Software, 5(54), 2166</strong> <a href="https://doi.org/10.21105/joss.02166">read the paper</a>
</span><br>
<span class="reference ">
Kain M, Bodin M, Loury S, Chi Y, Louis J, Simon M, Lamy J, Barillot C and Dojat M (2020) <cite>Small Animal Shanoir (SAS) A Cloud-Based Solution for Managing Preclinical MR Brain Imaging Studies</cite>. <strong>Front. Neuroinform. 14:20</strong> <a href="https://doi.org/10.3389/fninf.2020.00020">read the paper</a>
</span><br>
<span class="reference ">
Le Blanc, G., Jetté Pomerleau, V., McCarthy, J., Borroni, B., van Swieten, J., Galimberti, D., Sanchez-Valle, R., LaForce, R., Jr, Moreno, F., Synofzik, M., Graff, C., Masellis, M., Tartaglia, M.C., Rowe, J.B., Vandenberghe, R., Finger, E., Tagliavini, F., de Mendonça, A., Santana, I., Butler, C., Gerhard, A., Danek, A., Levin, J., Otto, M., Frisoni, G., Sorbi, S., Rohrer, J.D., Ducharme, S. and (2020) <cite>Faster Cortical Thinning and Surface Area Loss in Presymptomatic and Symptomatic C9orf72 Repeat Expansion Adult Carriers</cite>. <strong>Ann Neurol, 88: 113-122</strong> <a href="https://doi.org/10.1002/ana.25748">read the paper</a>
</span><br>
<span class="reference ">
Jie Mei, Cécilia Tremblay, Nikola Stikov, Christian Desrosiers, and Johannes Frasnelli <cite>Differentiation of Parkinson’s disease and non-Parkinsonian olfactory dysfunction with structural MRI data</cite>. <strong> Proc. SPIE 11597, Medical Imaging 2021: Computer-Aided Diagnosis, 115971E (15 February 2021)</strong> <a href="https://doi.org/10.1117/12.2581233">read the paper</a>
</span><br>
<span class="reference ">
Nishant Chauhan and Byung-Jae Choi <cite>DNN based Classification of ADHD fMRI Data using Functional Connectivity Coefficient</cite>. <strong> Nishant Chauhan and Byung-Jae Choi, International Journal of Fuzzy Logic and Intelligent Systems Vol. 20, No. 4, December 2020, pp. 255-260</strong> <a href="http://doi.org/10.5391/IJFIS.2020.20.4.255 ">read the paper</a>
</span><br>
<span class="reference ">
Sanjeevan T, Hammill C, Brian J, Crosbie J, Schachar R, Kelley E, Liu X, Nicolson R, Iaboni A, Day Fragiadakis S, Ristic L, Lerch JP and Anagnostou E (2020) <cite>Exploring the Neural Structures Underlying the Procedural Memory Network as Predictors of Language Ability in Children and Adolescents with Autism Spectrum Disorder and Attention Deficit Hyperactivity Disorder</cite>. <strong> Front. Hum. Neurosci. 14:587019.</strong> <a href="http://doi.org/10.3389/fnhum.2020.587019">read the paper</a>
</span><br>
<span class="reference ">
Iturria-Medina, Y., Carbonell, F., Assadi, A. et al. <cite>Integrating molecular, histopathological, neuroimaging and clinical neuroscience data with NeuroPM-box</cite>. <strong> Commun Biol 4, 614 (2021)</strong> <a href="https://doi.org/10.1038/s42003-021-02133-x">read the paper</a>
</span><br>
<span class="reference ">
Olivier Potvin, Louis Dieumegarde, Simon Duchesne <cite>NOMIS: Quantifying morphometric deviation from normality over the lifetime in the adult human brain</cite>. <strong>Alzheimer’s Disease Neuroimaging Initiative, CIMA-Q, bioRxiv 2021.01.25.428063</strong> <a href="https://doi.org/10.1101/2021.01.25.428063">read the paper</a>
</span><br>
<span class="reference ">
Guillaume Theaud, Jean-Christophe Houde, Arnaud Boré, François Rheault, Felix Morency, Maxime Descoteaux <cite>TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity</cite>. <strong>NeuroImage, Volume 218, 2020, 116889, ISSN 1053-8119</strong> <a href="https://doi.org/10.1016/j.neuroimage.2020.116889">read the paper</a>
</span><br>
<span class="reference ">
Redolfi A, De Francesco S, Palesi F, et al <cite>Medical Informatics Platform (MIP): A Pilot Study Across Clinical Italian Cohorts</cite>. <strong>Front Neurol. 2020;11:1021. Published 2020 Sep 23</strong> <a href="https://doi.org/10.3389/fneur.2020.01021">read the paper</a>
</span><br>
</p>
</li>
</ul>
</div>
</div>
</section>
<div class="clear-all"></div>
<!-- footer -->
<footer>
<div class="section-content flex flex-align-center">
<div class="logos">
<a href="https://www.mcgill.ca/hbhl/"><img src="images/logo-hbhl.png" alt="HBHL logo"></a>
<a href="http://ludmercentre.ca"><img src="images/logo-ludmer.png" alt="Ludmercentre logo"></a>
<a href="https://mcgill.ca"><img src="images/logo-mcgill.png" alt="McGill logo"></a>
<a href="https://www.mcgill.ca/neuro/"><img src="images/logo-neuro.jpg" alt="the Montreal Neurological Institute-Hospital logo"></a>
</div>
<div class="col-2 font-white text-center">
<h3>Contact Us</h3>
General Inquiries: <a href="mailto:[email protected]" class="font-white">[email protected]</a>
</div>
<div class="col-4 font-white text-center">
<a href="https://github.com/neurohub" class="font-white">
<img src="images/logo-github.png" class="github-icon center">
<h3>Find us on GitHub</h3>
</a>
</div>
<div class="col-4 font-white text-center">
<a href="https://twitter.com/HbhlNeuroHub" class="font-white">
<img src="images/logo-twitter.png" class="github-icon center">
<h3>Follow us on Twitter</h3>
</a>
</div>
</div>
</footer>
</div>
</div>
<script>
$(function(){
$("#showmenu").click(function(e){
$("#menu").slideUp();
if ($(this).next().is(":hidden")){
$(this).next().slideDown();
}
});
});
</script>
<script>
$(function(){
$(".accordian h3").click(function(e){
$(".accordian ul p.answer").slideUp();
if ($(this).next().is(":hidden")){
$(this).next().slideDown();
}
});
});
</script>
<script src="https://unpkg.com/aos@next/dist/aos.js"></script>
<script>
AOS.init({duration: 1000, offset: 120,});
</script>
</body></html>