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Why are so many HyPhy p-values 1 for the primate lineage? #7

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KittyMurphy opened this issue Feb 8, 2024 · 0 comments
Open

Why are so many HyPhy p-values 1 for the primate lineage? #7

KittyMurphy opened this issue Feb 8, 2024 · 0 comments

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@KittyMurphy
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Just correlated the p-values between the branch-site models from ETE3 and HyPhy, the correlation is ~0.3 with p<0.05 for all lineages apart from for the primate lineage.

When I looked more closely at the results, the majority of p-values for the primate lineage were 1. Need to figure out what's going on, could it be something to do with the out groups?
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@KittyMurphy