DESCRIPTION

Package: ConsensusPeak
Title: Call consensus peaks from multiple biological replicates
Version: 0.0.0.9000
Authors@R: 
  person(given = "Thomas", family = "Roberts", 
	email = "tomroberts.work15@gmail.com", 
	role = c("aut", "cre"),
	comment = c(ORCID = "0009-0006-6244-8670"))
Description: Generate consensus peak sets from multiple biological replicates. 
  Methods for thresholding include IDR, MSPC and ChIP-R.
URL: https://github.com/neurogenomics/ConsensusPeak
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Depends: 
  R (>= 4.2.0)
Imports:
  basilisk,
  ChIPpeakAnno,
  GenomicAlignments,
  GenomicRanges,
  idr2d,
  IRanges,
  MACSr,
  reticulate,
  Rsamtools,
  Rsubread,
  rtracklayer,
  utils
Suggests: 
  knitr,
  rmarkdown,
  rmspc,
  rworkflows,
  testthat (>= 3.0.0),
  withr
Config/testthat/edition: 3
RoxygenNote: 7.3.1
BugReports: https://github.com/neurogenomics/ConsensusPeak/issues
VignetteBuilder: knitr
biocViews: Epigenetics, PeakDetection, ChIPSeq