marcc_examples.tex

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%%% Jesse Leigh Patsolic
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%\title[Short title]{Title}
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%\author[]{Author}
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\begin{document}
%\begin{frame}
%\titlepage
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%\begin{frame}{Contents}
%\tableofcontents
%\end{frame}

\begin{frame}{Useful links}
\begin{minipage}[t]{0.3\textwidth}
    \begin{itemize}
        \item \href{https://www.marcc.jhu.edu}{MARCC Homepage}
        \item \href{https://www.marcc.jhu.edu/getting-started/running-jobs/}{The Queuing System}
        \item \href{https://www.marcc.jhu.edu/troubleshoot/storage-guidelines/}{Storage Guidelines}
    \end{itemize}
\end{minipage}
\begin{minipage}[t]{0.3\textwidth}
    \begin{itemize}
        \item \href{https://slurm.schedmd.com/job_array.html}{Slurm Array jobs}
    \end{itemize}
    %\rule{\textwidth}{0.2\textwidth}
\end{minipage}
\end{frame}

\begin{frame}[fragile]{The setup}
    \begin{enumerate}
        \item \verb;git clone https://github.com/neurodata/marcc_examples.git;
        \item \verb;ml python/3.8;
        \item \verb;python -m venv ~/env_examples;
        \item \verb;pip install -r marcc_examples/requirements.txt;
    \end{enumerate}
\end{frame}


\section{The Scripts}

\begin{frame}
    \begin{tabular}{l p{.75\textwidth}}
\textit{skrf.py} & The main python script that takes parameters such as
dataset ID, run ID,n\_jobs, output directory\dots.\\
%
\textit{workerScript.scr} & The slurm script used for each individual job.\\
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\textit{cleanUp.scr} & The script that runs the cleanup job/s.\\
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\textit{MASTER.scr} & The master script that sets up the job array and
sets cleanUp as a dependant job to be run after all exit cleanly.\\
    \end{tabular}
\end{frame}






\end{document}

%`git clone https://github.com/neurodata/marcc_examples.git`
%`ml python/3.8`
%`python -m venv ~/env_examples`
%`pip install -r marcc_examples/requirements.txt`

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