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I ran bids/ndmg through the docker container on 64 direction dMRIs, everything ran smoothly, but I'm having trouble with the HarvardOxford edgelist, the ROI labels don't seem to correspond between the atlas file in the container, and the edgelist labels. For the other label sets the correspondence is fine, eg. desikan.nii.gz contains labels 1-70, as does the edgelist. However, for HarvardOxford the edgelist has labels 1-111, HarvardOxford.nii.gz contains labels 10-4802 (below). Is there a lookup table available to convert between the two? ROI names would also be helpful.
Thanks!
Kevin
Hi Kevin, we are aware of this issue and are currently fixing it. While the atlases themselves are correct and the connectomes they generate, the labeling and numbering may be off. We will be updating our atlases with labels if possible (as some do not correspond to clear anatomical areas) soon.
-Ross
I ran bids/ndmg through the docker container on 64 direction dMRIs, everything ran smoothly, but I'm having trouble with the HarvardOxford edgelist, the ROI labels don't seem to correspond between the atlas file in the container, and the edgelist labels. For the other label sets the correspondence is fine, eg. desikan.nii.gz contains labels 1-70, as does the edgelist. However, for HarvardOxford the edgelist has labels 1-111, HarvardOxford.nii.gz contains labels 10-4802 (below). Is there a lookup table available to convert between the two? ROI names would also be helpful.
Thanks!
Kevin
HarvardOxford labels
0
10
11
12
13
17
18
26
49
50
51
52
53
54
58
101
102
201
202
301
302
401
402
501
502
601
602
701
702
801
802
901
902
1001
1002
1101
1102
1201
1202
1301
1302
1401
1402
1501
1502
1601
1602
1701
1702
1801
1802
1901
1902
2001
2002
2101
2102
2201
2202
2301
2302
2401
2402
2501
2502
2601
2602
2701
2702
2801
2802
2901
2902
3001
3002
3101
3102
3201
3202
3301
3302
3401
3402
3455
3501
3502
3601
3602
3701
3702
3801
3802
3901
3902
4001
4002
4101
4102
4201
4202
4301
4302
4401
4402
4501
4502
4601
4602
4701
4702
4801
4802
Snippet of sub-T01a_dwi_HarvardOxford.edgelist
90 93 4
90 98 8
90 99 8
90 108 3097
91 93 5
91 98 21
91 99 16
91 109 246
92 110 1147
92 102 10
92 106 1389
93 98 159
93 99 153
93 105 413
93 107 1614
93 111 4182
95 105 6
96 97 1
97 105 70
98 99 6715
98 111 14
99 103 68
99 111 71
100 101 47
102 106 599
102 110 1166
103 107 683
103 111 1200
104 106 707
105 107 921
105 111 111
106 110 2402
107 111 3469
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