Move to a create configuration setup

[ChrisJones687]

This will need to be in version 2.0 as it will be a major change to the API. The idea is to create 2 configuration creation functions (one for current parameter layout and one that works with a JSON format) that write out a Rdata file that has the config file ready to run for the function selected (e.g. calibrate, validate, multi-run, or auto-manage). The idea is that it simplifies the addition of new parameters which will be especially relevant with the addition of multiple networks and support for multi-host systems. The setup should save users time and make for more easily reproducible workflows.