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As discussed on 3/19 ops call, we'd like to start releasing data at the folder level. These can be treated in the same way as Synapse files
To enable testing of folder releases, I've added new htan-dcc.released.entities_v5_1 and htan-dcc.released.metadata_v5_1 tables to BigQuery, where the only change from v5_0 is the addition of a single new folder and manifest
This folder contains HTAPP MERFISH Accessory files, and is annotated at the folder level using the AccessoryManifest template. It would be great if the folder can be put under Assay = MERFISH on the portal so that it is displayed along with the other files in the dataset. The AccessoryManifest template contains an attribute called Data Type which specifies the assay type
The text was updated successfully, but these errors were encountered:
@clarisse-lau Do we want to show these folders under the Files tab? A folder does not have a Filename. It has an Accessory Name instead, and currently we ignore any file without a filename. Some other column names are also quite different than the file column names. Looks like we will need to tweak things a little bit if we want to treat these folders just like any other file. We will probably want to list the name of the folder under the Filename column instead of introducing a new Accessory Name column, right?
Thanks for working on this @onursumer!
The AccessoryManifest template has been modified to include Dataset Name (instead of Accessory Name), which can be used to populate the Filename column. We've also added HTAN Parent Biospecimen ID to ensure at minimum the linkage to biospecimens.
As discussed on 3/19 ops call, we'd like to start releasing data at the folder level. These can be treated in the same way as Synapse files
To enable testing of folder releases, I've added new
htan-dcc.released.entities_v5_1
andhtan-dcc.released.metadata_v5_1
tables to BigQuery, where the only change from v5_0 is the addition of a single new folder and manifestThis folder contains HTAPP MERFISH Accessory files, and is annotated at the folder level using the
AccessoryManifest
template. It would be great if the folder can be put under Assay = MERFISH on the portal so that it is displayed along with the other files in the dataset. TheAccessoryManifest
template contains an attribute calledData Type
which specifies the assay typeThe text was updated successfully, but these errors were encountered: