diff --git a/docs/changelog.md b/docs/changelog.md index 42f99171..b7ddb5e1 100644 --- a/docs/changelog.md +++ b/docs/changelog.md @@ -20,6 +20,38 @@ pip uninstall navis -y pip install git+https://github.com/navis-org/navis@master ``` +## Version `1.9.0` { data-toc-label="1.9.0" } +_Date: 17/10/24_ + +This version brings a shiny new interface to the [H01 human cortex](https://h01-release.storage.googleapis.com/landing.html) dataset +and various other quality of life improvements. + +##### Breaking +- The default for `radius` ([`navis.plot2d`][] and [`navis.plot3d`][]) was changed to `False` (from `"auto"`) to avoid running into issues + when visualizing large numbers of skeletons while using the defaults + +##### Additions +- New interface to the [H01](https://h01-release.storage.googleapis.com/landing.html) dataset by Jinhan Choi and Jakob Troidl (Lichtman lab); see the new tutorial for details + +##### Improvements +- I/O: + - [`read_nrrd`][navis.read_nrrd], [`read_tiff`][navis.read_tiff] and [`read_mesh`][navis.read_mesh] now use the same backend as e.g. [`read_swc`][navis.read_swc] which enables some niceties such as reading directly from URLs and archives, parallel processing, etc + - all `read_*` functions now have an `error` parameter that can be used to skip errors +- Image data: + - new function: [`navis.thin_voxels`][] can be used to thin images and `VoxelNeurons` to single-pixel width (see also below) + - new `thin` parameter for [`read_nrrd`][navis.read_nrrd], [`read_tiff`][navis.read_tiff] +- [`TreeNeurons`][navis.TreeNeuron]: + - skeletons can now be initialized from a `(vertices, edges)` tuple (see also [`navis.edges2neuron`]) + - new property: `TreeNeuron.vertices` gives read-only to node (vertex) coordinates +- [`VoxelNeurons`][navis.VoxelNeuron]: + - New properties: `VoxelNeuron.nnz` and `VoxelNeuron.density` +- [`navis.drop_fluff`][] and [`navis.neuron2nx`][] now also works with [`Dotprops`][navis.Dotprops] + +**Full Changelog**: [v1.8.0...v1.9.0](https://github.com/navis-org/navis/compare/v1.8.0...v1.9.0) + +##### Experimental +- setting `navis.config.add_units=True` (default is `False`) will add units to certain neuron properties such as `.cable_length` to make them human-readable + ## Version `1.8.0` { data-toc-label="1.8.0" } _Date: 22/09/24_ diff --git a/docs/index.md b/docs/index.md index 3f103040..d3a4ef50 100644 --- a/docs/index.md +++ b/docs/index.md @@ -90,7 +90,8 @@ morphology. It stands on the shoulders of the excellent Load neurons straight from Allen's [MICrONS](generated/gallery/4_remote/tutorial_remote_02_microns) datasets, - [neuromorpho](http://neuromorpho.org), [neuPrint](generated/gallery/4_remote/tutorial_remote_00_neuprint) + [neuromorpho](http://neuromorpho.org), [neuPrint](generated/gallery/4_remote/tutorial_remote_00_neuprint), + the [H01 dataset](generated/gallery/4_remote/tutorial_remote_04_h01) or any NeuroGlancer source. - :material-connection:{ .lg .middle } __Interfaces__