diff --git a/docs/examples/0_io/README.md b/docs/examples/0_io/README.md index 3c28edce..64546360 100644 --- a/docs/examples/0_io/README.md +++ b/docs/examples/0_io/README.md @@ -1,3 +1,3 @@ -### Import / Export +## Import / Export These tutorials will illustrate how to load and save your data: diff --git a/docs/examples/1_plotting/README.md b/docs/examples/1_plotting/README.md index 12d96689..cfdfe9c9 100644 --- a/docs/examples/1_plotting/README.md +++ b/docs/examples/1_plotting/README.md @@ -1,3 +1,3 @@ -### Plotting +## Plotting These tutorials will show you how to visualize your neurons: diff --git a/docs/examples/1_plotting/tutorial_plotting_06_cortex.py b/docs/examples/1_plotting/tutorial_plotting_06_cortex.py index 3a5adbaf..93ceed72 100644 --- a/docs/examples/1_plotting/tutorial_plotting_06_cortex.py +++ b/docs/examples/1_plotting/tutorial_plotting_06_cortex.py @@ -26,8 +26,8 @@ # %% # ## Part I: Loading and Aligning Neurons # -# First we need to load the neurons. Here, we will take them straight from their FTP server but you can of course download them first -# and load then from disk! +# First we need to load the neurons. Here, we will take them straight from their FTP server +# but you can of course download them first and then load from disk! import navis @@ -190,7 +190,8 @@ def plot_neurons(to_plot, color="purple", axon_color="magenta", offset=500): fig, ax = plot_neurons(nl) # %% [markdown] -# Next, let's calculate the distribution of cable lengths: +# That looks close enough. The last bit is to add the little KDE plots for the depth-distribution of +# cable length: # # We're going to be cheap here and simply generate a histogram over the node positions. # To make this representative, we should make sure that the number of nodes per unit of cable @@ -216,12 +217,12 @@ def plot_neurons(to_plot, color="purple", axon_color="magenta", offset=500): nodes.head() # %% -# Now we can plot the distribution of cable lengths for the neurons of the type we're interested in: +# Now we can plot the distribution of cable lengths for our neurons: import seaborn as sns from mpl_toolkits.axes_grid1 import make_axes_locatable -# Plot the neurons using the function we defined earlier +# Plot the neurons again, re-using the function we defined above fig, ax = plot_neurons(nl) # Add a new axis to the right of the main plot diff --git a/docs/examples/2_morpho/README.md b/docs/examples/2_morpho/README.md index a52743a5..c3e271cf 100644 --- a/docs/examples/2_morpho/README.md +++ b/docs/examples/2_morpho/README.md @@ -1,3 +1,3 @@ -### Morphology +## Morphology These tutorials will show you how to analyse and manipulate your neurons' morphology: diff --git a/docs/examples/3_interfaces/README.md b/docs/examples/3_interfaces/README.md index 309beac0..b4cf75d8 100644 --- a/docs/examples/3_interfaces/README.md +++ b/docs/examples/3_interfaces/README.md @@ -1,3 +1,3 @@ -### Interfaces +## Interfaces These tutorials cover interfaces between {{ navis }} and external tools: diff --git a/docs/examples/4_remote/README.md b/docs/examples/4_remote/README.md index 25b55798..106e05fb 100644 --- a/docs/examples/4_remote/README.md +++ b/docs/examples/4_remote/README.md @@ -1,3 +1,3 @@ -### Remote Data Sources +## Remote Data Sources These tutorials will show you how to load data from remote data sources: diff --git a/docs/examples/5_nblast/README.md b/docs/examples/5_nblast/README.md index be6d26cc..fdc7790f 100644 --- a/docs/examples/5_nblast/README.md +++ b/docs/examples/5_nblast/README.md @@ -1,3 +1,3 @@ -### NBLAST +## NBLAST These tutorials will teach you how to run NBLASTs to compare neuron morphology. diff --git a/docs/examples/6_misc/README.md b/docs/examples/6_misc/README.md index 27e6f6aa..31c46e0c 100644 --- a/docs/examples/6_misc/README.md +++ b/docs/examples/6_misc/README.md @@ -1 +1 @@ -### Misc +## Misc