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failing local build #678

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bovard opened this issue Sep 10, 2015 · 9 comments
Open

failing local build #678

bovard opened this issue Sep 10, 2015 · 9 comments

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@bovard
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bovard commented Sep 10, 2015

When I run:

cd source
./app_setup.sh

it runs for a good long while and then I get the following error:

npm http GET https://registry.npmjs.org/is-property
npm http 200 https://registry.npmjs.org/is-property

> [email protected] install /anaconda/envs/memex/lib/node_modules/log.io/node_modules/socket.io-client/node_modules/ws
> (node-gyp rebuild 2> builderror.log) || (exit 0)

  CXX(target) Release/obj.target/bufferutil/src/bufferutil.o
  SOLINK_MODULE(target) Release/bufferutil.node
  SOLINK_MODULE(target) Release/bufferutil.node: Finished
  CXX(target) Release/obj.target/validation/src/validation.o
  SOLINK_MODULE(target) Release/validation.node
  SOLINK_MODULE(target) Release/validation.node: Finished

> [email protected] install /anaconda/envs/memex/lib/node_modules/log.io/node_modules/socket.io/node_modules/socket.io-client/node_modules/ws
> (node-gyp rebuild 2> builderror.log) || (exit 0)

  CXX(target) Release/obj.target/bufferutil/src/bufferutil.o
  SOLINK_MODULE(target) Release/bufferutil.node
  SOLINK_MODULE(target) Release/bufferutil.node: Finished
  CXX(target) Release/obj.target/validation/src/validation.o
  SOLINK_MODULE(target) Release/validation.node
  SOLINK_MODULE(target) Release/validation.node: Finished
/anaconda/envs/memex/bin/log.io-server -> /anaconda/envs/memex/lib/node_modules/log.io/bin/log.io-server
/anaconda/envs/memex/bin/log.io-harvester -> /anaconda/envs/memex/lib/node_modules/log.io/bin/log.io-harvester

> [email protected] postinstall /anaconda/envs/memex/lib/node_modules/log.io
> cake ensure:configuration

Creating ~/.log.io/ for configuration files.
If this fails, run npm using a specific user: npm install -g log.io --user 'ubuntu'
[email protected] /anaconda/envs/memex/lib/node_modules/log.io
├── [email protected]
├── [email protected]
├── [email protected]
├── [email protected]
├── [email protected] ([email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected])
├── [email protected] ([email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected])
├── [email protected] ([email protected], [email protected], [email protected], [email protected], [email protected], [email protected])
├── [email protected] ([email protected], [email protected], [email protected], [email protected])
└── [email protected] ([email protected], [email protected], [email protected], [email protected])
Traceback (most recent call last):
  File "manage.py", line 10, in <module>
    execute_from_command_line(sys.argv)
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/core/management/__init__.py", line 385, in execute_from_command_line
    utility.execute()
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/core/management/__init__.py", line 345, in execute
    settings.INSTALLED_APPS
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/conf/__init__.py", line 46, in __getattr__
    self._setup(name)
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/conf/__init__.py", line 42, in _setup
    self._wrapped = Settings(settings_module)
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/conf/__init__.py", line 94, in __init__
    mod = importlib.import_module(self.SETTINGS_MODULE)
  File "//anaconda/envs/memex/lib/python2.7/importlib/__init__.py", line 37, in import_module
    __import__(name)
  File "/Users/.../memex-explorer/source/memex/__init__.py", line 3, in <module>
    from .celery import app as celery_app
  File "/Users/.../memex-explorer/source/memex/celery.py", line 6, in <module>
    from celery import Celery
  File "//anaconda/envs/memex/lib/python2.7/site-packages/celery/__init__.py", line 130, in <module>
    from celery import five
  File "//anaconda/envs/memex/lib/python2.7/site-packages/celery/five.py", line 51, in <module>
    from kombu.five import monotonic
  File "//anaconda/envs/memex/lib/python2.7/site-packages/kombu/five.py", line 52, in <module>
    libSystem = ctypes.CDLL('libSystem.dylib')
  File "//anaconda/envs/memex/lib/python2.7/ctypes/__init__.py", line 365, in __init__
    self._handle = _dlopen(self._name, mode)
OSError: dlopen(libSystem.dylib, 6): image not found
~/Code/me/memex-explorer/deploy ~/Code/me/memex-explorer/source
~/Code/me/memex-explorer/source
discarding //anaconda/envs/memex/bin from PATH
source$

Looking through commands in app_setup.sh this looks like it is happening in the python manage.py migrate step:

source$ source activate memex
discarding //anaconda/bin from PATH
prepending //anaconda/envs/memex/bin to PATH
(memex)source$ python manage.py migrate
Traceback (most recent call last):
  File "manage.py", line 10, in <module>
    execute_from_command_line(sys.argv)
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/core/management/__init__.py", line 385, in execute_from_command_line
    utility.execute()
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/core/management/__init__.py", line 345, in execute
    settings.INSTALLED_APPS
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/conf/__init__.py", line 46, in __getattr__
    self._setup(name)
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/conf/__init__.py", line 42, in _setup
    self._wrapped = Settings(settings_module)
  File "//anaconda/envs/memex/lib/python2.7/site-packages/django/conf/__init__.py", line 94, in __init__
    mod = importlib.import_module(self.SETTINGS_MODULE)
  File "//anaconda/envs/memex/lib/python2.7/importlib/__init__.py", line 37, in import_module
    __import__(name)
  File "/Users/.../memex-explorer/source/memex/__init__.py", line 3, in <module>
    from .celery import app as celery_app
  File "/Users/.../memex-explorer/source/memex/celery.py", line 6, in <module>
    from celery import Celery
  File "//anaconda/envs/memex/lib/python2.7/site-packages/celery/__init__.py", line 130, in <module>
    from celery import five
  File "//anaconda/envs/memex/lib/python2.7/site-packages/celery/five.py", line 51, in <module>
    from kombu.five import monotonic
  File "//anaconda/envs/memex/lib/python2.7/site-packages/kombu/five.py", line 52, in <module>
    libSystem = ctypes.CDLL('libSystem.dylib')
  File "//anaconda/envs/memex/lib/python2.7/ctypes/__init__.py", line 365, in __init__
    self._handle = _dlopen(self._name, mode)
OSError: dlopen(libSystem.dylib, 6): image not found
(memex)source$
Traceback (most recent call last):
@bovard bovard mentioned this issue Sep 10, 2015
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@ahmadia
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ahmadia commented Sep 11, 2015

@bovard - sorry for the delay in responding to this. It looks like there's a problem with your Anaconda install.

OSError: dlopen(libSystem.dylib, 6): image not found

9 times out of 10 these are caused when you have DYLD_LIBRARY_PATH, LD_LIBRARY_PATH, or DYLD_FALLBACK_LIBRARY_PATH defined in your environment. You can check what's in your environment by typing printenv at your shell.

Also, I usually recommend that people install Anaconda into its default location in their home directory to avoid permissions issues.

Let me know if this helps.

@bovard
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bovard commented Sep 15, 2015

@ahmadia thanks, I'll take a look later this week

@ahmadia
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ahmadia commented Oct 4, 2015

@bovard - Any progress on this?

@ahmadia ahmadia mentioned this issue Oct 9, 2015
Merged
@bovard
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bovard commented Oct 11, 2015

@ahmadia it works! just needed to do export DYLD_FALLBACK_LIBRARY_PATH=/usr/lib

@ahmadia
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ahmadia commented Oct 11, 2015 

export DYLD_FALLBACK_LIBRARY_PATH=/usr/lib

Was it set to something else before? Setting DYLD_FALLBACK_LIBRARY_PATH=/usr/lib is going to cause problems for any user-installed tools (Homebrew, MacPorts, conda) in the future.

@bovard
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bovard commented Oct 12, 2015

Looks like it was set to:

DYLD_FALLBACK_LIBRARY_PATH: :/Users/me/anaconda/lib:/Users/me/anaconda/lib

@bovard
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bovard commented Oct 12, 2015

Looks like the crawl functionality doesn't work, displays JAVA_HOME is set to... and usage but doesn't do any crawling.

@ahmadia
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ahmadia commented Oct 13, 2015

Yeah, try unsetting it completely.

@ahmadia
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ahmadia commented Oct 13, 2015

Sorry, missed that last message from you. memex-explorer is a web application, did you start it up using supervisor and then point your browser to localhost?

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@ahmadia @bovard