diff --git a/modules/local/filtlong/main.nf b/modules/local/filtlong/main.nf index 230521d4..eda013d0 100644 --- a/modules/local/filtlong/main.nf +++ b/modules/local/filtlong/main.nf @@ -6,10 +6,10 @@ process FILTLONG { output: tuple val(sample), path("${sample}_filtlong.fastq.gz"), emit: reads shell: - // Filter reads based on length (min 100 bp) and mean quality (min 99%, i.e, a Phred score of 20) + // Filter reads based on length (min 100 bp) and mean average base quality (min 90%, i.e, a Phred score of 10) ''' o=!{sample}_filtlong.fastq.gz i=!{reads[0]} filtlong --min_length 100 --min_mean_q 90 --verbose ${i} | gzip > ${o} ''' -} \ No newline at end of file +}