From 20b46e309818ceff8793190227025806a7485d24 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Pansanel?= <jerome.pansanel@iphc.cnrs.fr>
Date: Thu, 30 Jan 2025 17:11:29 +0100
Subject: [PATCH] Update the documentation and version requirements

---
 INSTALL.rst | 29 +++++++++++++++++++++++------
 README.rst  | 11 +++++++----
 2 files changed, 30 insertions(+), 10 deletions(-)

diff --git a/INSTALL.rst b/INSTALL.rst
index 2362772..21a5a61 100644
--- a/INSTALL.rst
+++ b/INSTALL.rst
@@ -7,9 +7,9 @@ Requirements
 
 The following are required to build Mychem:
 
-*  cmake v2.4.5 or higher
+*  cmake v3.10 or higher
 *  libmysqlclient-dev v5.0 or higher (or the MariaDB equivalent)
-*  openbabel-dev v2.3.0 or higher
+*  openbabel-dev v3.0 or higher
 
 
 Quick Install
@@ -17,13 +17,15 @@ Quick Install
 
 This section describes a simple way to compile and install Mychem on
 GNU/Linux. For a more complete documentation about the installation
-procedure (in particular on Windows and Mac OS X), see the
+procedure (in particular on Mac OS X), see the
 `online documentation <https://mychem.github.io/docs/installation.html>`_.
 
+
 Get the last stable release
 +++++++++++++++++++++++++++
 
-The last stable release can be downloaded from the `Mychem GitHub release page <//github.com/mychem/mychem-code/releases/download/v1.0.1/mychem-1.0.1.tgz>`_.
+The last stable release can be downloaded from the
+`Mychem GitHub release page <https://github.com/mychem/mychem-code/releases/>`_.
 
 Uncompress the code
 +++++++++++++++++++
@@ -33,7 +35,8 @@ code with:
 
 ::
 
-   $ tar xfzv mychem-1.0.1.tgz
+   $ tar xfzv mychem-2.0.0.tgz
+
 
 Compilation and Installation
 ++++++++++++++++++++++++++++
@@ -46,7 +49,7 @@ this short tutorial:
 
 ::
 
-   $ cd mychem-1.0.1
+   $ cd mychem-2.0.0
    $ mkdir build
    $ cd build
    $ cmake ..
@@ -60,3 +63,17 @@ It is done with the following command:
 
    $ mysql -u user -p < src/mysqldb.sql
 
+On Ubuntu, the following additional steps are required:
+
+1. Add the following line to the ``/etc/apparmor.d/local/usr.sbin.mysqld``
+
+   ::
+
+      /usr/lib/openbabel/** r,
+
+2. Reload the AppArmor configuration:
+
+   ::
+
+      $ cat /etc/apparmor.d/usr.sbin.mysqld | apparmor_parser -r
+
diff --git a/README.rst b/README.rst
index cb48ec2..8432761 100644
--- a/README.rst
+++ b/README.rst
@@ -3,26 +3,29 @@ The Mychem Project
 
 Mychem is a chemoinformatics extension for MySQL. This extension
 provides a set of functions that handles chemical data within the MySQL
-(or MariaDB) database. Mychem is based on `Open Babel <http://openbabel.org/wiki/Main_Page>`_.
+(or MariaDB) database. Mychem is based on `Open Babel <https://openbabel.org/>`_.
 As Open Babel is a high-quality software in chemoinformatics, Mychem
 provides reliable and fast functions. These functions permit you to
 search, analyze and convert chemical data.
 
-More information are available from the `Mychem Website <http://mychem.github.io>`_.
+More information are available from the `Mychem Website <https://mychem.github.io>`_.
+
 
 Documentation
 -------------
 
-A complete and detailed documentation is available `online <http://mychem.github.io/docs/index.html>`_.
+A complete and detailed documentation is available `online <https://mychem.github.io/docs/index.html>`_.
 A `pdf version <https://mychem.github.io/mychem-latest.pdf>`_ can also be
 downloaded.
 
+
 Installation
 ------------
 
 See the `INSTALL.rst <https://github.com/mychem/mychem-code/blob/master/INSTALL.rst>`_
 file for the installation instructions on GNU/Linux. Instructions for
-Mac OS X and Windows are given on the dedicated `documentation page <https://mychem.github.io/docs/installation.html>`_ .
+Mac OS X and Windows are given on the dedicated
+`documentation page <https://mychem.github.io/docs/installation.html>`_ .
 
 
 License