diff --git a/README.md b/README.md index 5bad67f..9e858eb 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ -# supplemental data and code for Stern et al. 2017 +# Supplemental data and code for Stern et al. 2017 -## data +## Data All raw data are in `data/` and contain pulse times and ipis. The files starting with `dat/Stern2014*` contain different annotations of the song recordings (Canton S, period mutants, D. simulans) first published in Stern et al. 2014 (see David Stern's [website][1] for the raw recordings): - `dat/Stern2014_FSSStern2014.mat` - automatically segmented using the original version of [FlySongSegmenter][2] and taken from the [data supplement][1] to [Arthur et al.,2013][3]. - `dat/Stern2014_FSSStern2014.mat` - automatically segmented using a modified version of the [FlySongSegmenter from the Murthy lab][4] with parameters used in [Coen et al. (2014)][5] @@ -8,13 +8,13 @@ All raw data are in `data/` and contain pulse times and ipis. The files starting `dat/Stern2017_FSSCoen2014` contains segmentations of new [recordings][1] of Canton S and perL flies segmented using the [Murthy lab segmenter][4] -## code +## Code `Fig*` folders contain code and data to reproduce the figures in the paper - see comments in the respective scripts. `code` contains general source code used by the scripts. `spectra` contains code and data for pre-calculating the IPI spectra for all data sets. [1]: https://www.janelia.org/lab/stern-lab/tools-reagents-data "Stern lab data" [2]: https://github.com/FlyCourtship/FlySongSegmenter "original fly song segmenter" -[3]: [1]: https://bmcbiol.biomedcentral.com/articles/10.1186/1741-7007-11-11 "Multi-channel acoustic recording and automated analysis of Drosophila courtship songs" +[3]: https://bmcbiol.biomedcentral.com/articles/10.1186/1741-7007-11-11 "Multi-channel acoustic recording and automated analysis of Drosophila courtship songs" [4]: https://github.com/murthylab/songSegmenter "Murthy lab song segmenter" [5]: https://www.nature.com/nature/journal/v507/n7491/full/nature13131.html "Dynamic sensory cues shape song structure in _Drosophila_" [6]: http://www.pnas.org/content/114/8/1970.abstract "Failure to reproduce period-dependent song cycles in Drosophila is due to poor automated pulse-detection and low-intensity courtship"