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incorporate dos2unix into samples fillout workflow (resurrection workflow) #70

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stevekm opened this issue Sep 8, 2021 · 1 comment

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bug low priority revisit this later

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stevekm commented Sep 8, 2021

Need to get dos2unix included in here to deal with some issues with vcf2maf

pluto-cwl/cwl/samples_fillout_workflow.cwl

Line 72 in 3365f10

    
           # NOTE: might need dos2unix for some that give errors ERROR: Your MAF uses CR line breaks, which we can't support. Please use LF or CRLF.

stevekm added the bug label

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stevekm commented Sep 14, 2021

Note that this is needed because some of the split DMP maf files seem to have carriage returns embedded in some cases

stevekm added the low priority label

svural added the revisit this later label

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