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get variant overlap metrics into the pipeline #41

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stevekm opened this issue Mar 4, 2021 · 2 comments
Open

get variant overlap metrics into the pipeline #41

stevekm opened this issue Mar 4, 2021 · 2 comments
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enhancement New feature or request revisit this later non-critical, non-breaking change to consider

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@stevekm
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stevekm commented Mar 4, 2021

Use https://github.com/mskcc/variant-overlap or some other tool to add sample variant overlap metrics to the sample comparison workflows & output metrics, variants, and/or reports so that we can directly compare the variants present/absent between 2 or more samples

there might also be other vcf tools that could do this as well
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stevekm commented Mar 10, 2021

instead of my custom tool listed there I think it might be better to just use bcftools isec

@stevekm stevekm mentioned this issue Mar 16, 2021
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stevekm commented Mar 31, 2021

related to #47

@stevekm stevekm mentioned this issue Mar 31, 2021
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@stevekm stevekm added the enhancement New feature or request label Sep 21, 2021
@svural svural added the revisit this later non-critical, non-breaking change to consider label May 31, 2024
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