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We have got Manta, But Manta is not like one script launch its a two script launch. We will need to write a wrapper. Thus might need to create a separate Manta Repository
One thing left here is where we should run convertInversion.py, because it requires us to unzip the bgzip file and then use unzipped file to do the conversion.
available starting points:
It also requires convertInversion.py script exposed.
It requires samtools (for version look here:
/opt/common/CentOS_7
)Manta Version (look here:
/opt/common/CentOS_7
)Generate a docker file
Write CWL accompanying the docker file
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