From ade94931daa46b905a5ce8c49ca1835886fd6e7d Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Wed, 18 Jan 2023 19:08:46 +0000
Subject: [PATCH] Bump snakemake from 6.0.2 to 7.20.0 in /dependencies

Bumps [snakemake](https://github.com/snakemake/snakemake) from 6.0.2 to 7.20.0.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v6.0.2...v7.20.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 dependencies/Pipfile.lock | 1036 ++++++++++++++++++++++++-------------
 1 file changed, 680 insertions(+), 356 deletions(-)

diff --git a/dependencies/Pipfile.lock b/dependencies/Pipfile.lock
index cb71c3c980f..cc7b8760110 100644
--- a/dependencies/Pipfile.lock
+++ b/dependencies/Pipfile.lock
@@ -16,13 +16,6 @@
         ]
     },
     "default": {
-        "amply": {
-            "hashes": [
-                "sha256:cb12dcb49d16b168c02be128a1527ecde50211e4bd94af76ff4e67707f5a2d38",
-                "sha256:f8a846a544750493f45e75e9b44c393144be5728701df4f596b1fa5595d263fd"
-            ],
-            "version": "==0.1.4"
-        },
         "ansible-lint": {
             "hashes": [
                 "sha256:41a139ac50f9f60e92711b84f4be584aaf3e5d726004751640058423ef6af0c4",
@@ -40,32 +33,36 @@
         },
         "argcomplete": {
             "hashes": [
-                "sha256:17f01a9b9b9ece3e6b07058eae737ad6e10de8b4e149105f84614783913aba71",
-                "sha256:de0e1282330940d52ea92a80fea2e4b9e0da1932aaa570f84d268939d1897b04"
+                "sha256:6372ad78c89d662035101418ae253668445b391755cfe94ea52f1b9d22425b20",
+                "sha256:cffa11ea77999bb0dd27bb25ff6dc142a6796142f68d45b1a26b11f58724561e"
             ],
-            "version": "==1.12.2"
+            "markers": "python_version >= '3.6'",
+            "version": "==2.0.0"
         },
         "astroid": {
             "hashes": [
-                "sha256:21d735aab248253531bb0f1e1e6d068f0ee23533e18ae8a6171ff892b98297cf",
-                "sha256:cfc35498ee64017be059ceffab0a25bedf7548ab76f2bea691c5565896e7128d"
+                "sha256:2476b7f0d6cec13f4c1f53b54bea2ce072310ac9fc7acb669d5270190c748042",
+                "sha256:f0c8bfebc3da61bde8e3e3df1e879dc16e6d26d6078ddc34813fcb07045782d3"
             ],
-            "version": "==2.5.1"
+            "markers": "python_version ~= '3.6'",
+            "version": "==2.5.8"
         },
         "attrs": {
             "hashes": [
-                "sha256:31b2eced602aa8423c2aea9c76a724617ed67cf9513173fd3a4f03e3a929c7e6",
-                "sha256:832aa3cde19744e49938b91fea06d69ecb9e649c93ba974535d08ad92164f700"
+                "sha256:29e95c7f6778868dbd49170f98f8818f78f3dc5e0e37c0b1f474e3561b240836",
+                "sha256:c9227bfc2f01993c03f68db37d1d15c9690188323c067c641f1a35ca58185f99"
             ],
-            "version": "==20.3.0"
+            "markers": "python_version >= '3.6'",
+            "version": "==22.2.0"
         },
         "aws-sam-translator": {
             "hashes": [
-                "sha256:1cfc8ba13c43e8c425fdcd6c246fdd90899a3ed89310d84a72ccdf082e4146d7",
-                "sha256:857c62a03e3bb4a3f7074e867f52ced636dc06192c8216e00732122f21a206c2",
-                "sha256:a22d505ddc0c48e3cf0ff0127096bdc1231d20c852509201ffba47dc8e683a1a"
+                "sha256:08e182e76d6fabc13ce2f38b8a3932b3131407c6ad29ec2849ef3d9a41576b94",
+                "sha256:93dc74614ab291c86be681e025679d08f4fa685ed6b55d410f62f2f235012205",
+                "sha256:e86a67b87329a0de7d531d33257d1a448d0d6ecd84aee058d084957f28a8e4b1"
             ],
-            "version": "==1.34.0"
+            "markers": "python_version >= '3.7' and python_version != '4.0' and python_version <= '4.0'",
+            "version": "==1.55.0"
         },
         "black": {
             "hashes": [
@@ -77,31 +74,35 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:2219f1ebe88d266afa5516f993983eba8742b957fa4fd6854f3c73aa3030e931",
-                "sha256:c0d51f344b71656c2d395d2168600d91bea252a64fb5d503a955ea96426cde8b"
+                "sha256:b4aefdc72191c40a0155511b9ce933c94dcbdd1834ffc1204e90a30e7849ef13",
+                "sha256:d599ce626b03e7236b0cda051c3cedc128fd75e0ec2f799fab9b2eabdf32d945"
             ],
-            "version": "==1.17.20"
+            "markers": "python_version >= '3.7'",
+            "version": "==1.26.51"
         },
         "botocore": {
             "hashes": [
-                "sha256:80c32a81fb1ee8bdfa074a79bfb885bb2006e8a9782f2353c0c9f6392704e13a",
-                "sha256:e9e724b59278ebf5caf032be1e32bde0990d79e8052e3bbbb97b6c1d32feba28"
+                "sha256:bbb92420902b4d9e4b854fcfae20d1029f1c3396e0579894f115278bc51d6198",
+                "sha256:f2f521fbd2343879f3c2d42392c88f1e7f15ea147a6dc5a3dab7b8686d90fcb6"
             ],
-            "version": "==1.20.20"
+            "markers": "python_version >= '3.7'",
+            "version": "==1.29.51"
         },
         "bracex": {
             "hashes": [
-                "sha256:01f715cd0ed7a622ec8b32322e715813f7574de531f09b70f6f3b2c10f682425",
-                "sha256:64e2a6d14de9c8e022cf40539ac8468ba7c4b99550a2b05fc87fd20e392e568f"
+                "sha256:351b7f20d56fb9ea91f9b9e9e7664db466eb234188c175fd943f8f755c807e73",
+                "sha256:e7b23fc8b2cd06d3dec0692baabecb249dda94e06a617901ff03a6c56fd71693"
             ],
-            "version": "==2.1.1"
+            "markers": "python_version >= '3.7'",
+            "version": "==2.3.post1"
         },
         "certifi": {
             "hashes": [
-                "sha256:1a4995114262bffbc2413b159f2a1a480c969de6e6eb13ee966d470af86af59c",
-                "sha256:719a74fb9e33b9bd44cc7f3a8d94bc35e4049deebe19ba7d8e108280cfd59830"
+                "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3",
+                "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"
             ],
-            "version": "==2020.12.5"
+            "markers": "python_version >= '3.6'",
+            "version": "==2022.12.7"
         },
         "cfn-lint": {
             "hashes": [
@@ -111,27 +112,107 @@
             "index": "pypi",
             "version": "==0.46.0"
         },
-        "chardet": {
-            "hashes": [
-                "sha256:0d6f53a15db4120f2b08c94f11e7d93d2c911ee118b6b30a04ec3ee8310179fa",
-                "sha256:f864054d66fd9118f2e67044ac8981a54775ec5b67aed0441892edb553d21da5"
-            ],
-            "version": "==4.0.0"
+        "charset-normalizer": {
+            "hashes": [
+                "sha256:00d3ffdaafe92a5dc603cb9bd5111aaa36dfa187c8285c543be562e61b755f6b",
+                "sha256:024e606be3ed92216e2b6952ed859d86b4cfa52cd5bc5f050e7dc28f9b43ec42",
+                "sha256:0298eafff88c99982a4cf66ba2efa1128e4ddaca0b05eec4c456bbc7db691d8d",
+                "sha256:02a51034802cbf38db3f89c66fb5d2ec57e6fe7ef2f4a44d070a593c3688667b",
+                "sha256:083c8d17153ecb403e5e1eb76a7ef4babfc2c48d58899c98fcaa04833e7a2f9a",
+                "sha256:0a11e971ed097d24c534c037d298ad32c6ce81a45736d31e0ff0ad37ab437d59",
+                "sha256:0bf2dae5291758b6f84cf923bfaa285632816007db0330002fa1de38bfcb7154",
+                "sha256:0c0a590235ccd933d9892c627dec5bc7511ce6ad6c1011fdf5b11363022746c1",
+                "sha256:0f438ae3532723fb6ead77e7c604be7c8374094ef4ee2c5e03a3a17f1fca256c",
+                "sha256:109487860ef6a328f3eec66f2bf78b0b72400280d8f8ea05f69c51644ba6521a",
+                "sha256:11b53acf2411c3b09e6af37e4b9005cba376c872503c8f28218c7243582df45d",
+                "sha256:12db3b2c533c23ab812c2b25934f60383361f8a376ae272665f8e48b88e8e1c6",
+                "sha256:14e76c0f23218b8f46c4d87018ca2e441535aed3632ca134b10239dfb6dadd6b",
+                "sha256:16a8663d6e281208d78806dbe14ee9903715361cf81f6d4309944e4d1e59ac5b",
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+                "sha256:2c03cc56021a4bd59be889c2b9257dae13bf55041a3372d3295416f86b295fb5",
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+                "sha256:39cf9ed17fe3b1bc81f33c9ceb6ce67683ee7526e65fde1447c772afc54a1bb8",
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+                "sha256:c2ac1b08635a8cd4e0cbeaf6f5e922085908d48eb05d44c5ae9eabab148512ca",
+                "sha256:c512accbd6ff0270939b9ac214b84fb5ada5f0409c44298361b2f5e13f9aed9e",
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+                "sha256:c95a03c79bbe30eec3ec2b7f076074f4281526724c8685a42872974ef4d36b72",
+                "sha256:cadaeaba78750d58d3cc6ac4d1fd867da6fc73c88156b7a3212a3cd4819d679d",
+                "sha256:cd6056167405314a4dc3c173943f11249fa0f1b204f8b51ed4bde1a9cd1834dc",
+                "sha256:db72b07027db150f468fbada4d85b3b2729a3db39178abf5c543b784c1254539",
+                "sha256:df2c707231459e8a4028eabcd3cfc827befd635b3ef72eada84ab13b52e1574d",
+                "sha256:e62164b50f84e20601c1ff8eb55620d2ad25fb81b59e3cd776a1902527a788af",
+                "sha256:e696f0dd336161fca9adbb846875d40752e6eba585843c768935ba5c9960722b",
+                "sha256:eaa379fcd227ca235d04152ca6704c7cb55564116f8bc52545ff357628e10602",
+                "sha256:ebea339af930f8ca5d7a699b921106c6e29c617fe9606fa7baa043c1cdae326f",
+                "sha256:f4c39b0e3eac288fedc2b43055cfc2ca7a60362d0e5e87a637beac5d801ef478",
+                "sha256:f5057856d21e7586765171eac8b9fc3f7d44ef39425f85dbcccb13b3ebea806c",
+                "sha256:f6f45710b4459401609ebebdbcfb34515da4fc2aa886f95107f556ac69a9147e",
+                "sha256:f97e83fa6c25693c7a35de154681fcc257c1c41b38beb0304b9c4d2d9e164479",
+                "sha256:f9d0c5c045a3ca9bedfc35dca8526798eb91a07aa7a2c0fee134c6c6f321cbd7",
+                "sha256:ff6f3db31555657f3163b15a6b7c6938d08df7adbfc9dd13d9d19edad678f1e8"
+            ],
+            "version": "==3.0.1"
         },
         "click": {
             "hashes": [
                 "sha256:d2b5255c7c6349bc1bd1e59e08cd12acbbd63ce649f2588755783aa94dfb6b1a",
                 "sha256:dacca89f4bfadd5de3d7489b7c8a566eee0d3676333fbb50030263894c38c0dc"
             ],
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==7.1.2"
         },
-        "colorama": {
-            "hashes": [
-                "sha256:5941b2b48a20143d2267e95b1c2a7603ce057ee39fd88e7329b0c292aa16869b",
-                "sha256:9f47eda37229f68eee03b24b9748937c7dc3868f906e8ba69fbcbdd3bc5dc3e2"
-            ],
-            "version": "==0.4.4"
-        },
         "commonmark": {
             "hashes": [
                 "sha256:452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60",
@@ -141,9 +222,17 @@
         },
         "configargparse": {
             "hashes": [
-                "sha256:0428b975ab6c48bb101ccb732e1b5cb616296e28268e032aa806f32b647a1cc1"
+                "sha256:18f6535a2db9f6e02bd5626cc7455eac3e96b9ab3d969d366f9aafd5c5c00fe7",
+                "sha256:1b0b3cbf664ab59dada57123c81eff3d9737e0d11d8cf79e3d6eb10823f1739f"
             ],
-            "version": "==1.3"
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
+            "version": "==1.5.3"
+        },
+        "connection-pool": {
+            "hashes": [
+                "sha256:bf429e7aef65921c69b4ed48f3d48d3eac1383b05d2df91884705842d974d0dc"
+            ],
+            "version": "==0.0.3"
         },
         "cython": {
             "hashes": [
@@ -210,35 +299,39 @@
                 "sha256:f826e843138698501cbf1a21233f724b851b1e475fad532b638ac5904e115f10",
                 "sha256:fa9f39ac88dc6286672b9dd286fe459646da48133c877a927af24803eaea441e"
             ],
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
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@@ -250,39 +343,44 @@
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@@ -291,27 +389,37 @@
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@@ -371,78 +549,84 @@
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@@ -467,191 +653,298 @@
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@@ -663,66 +956,85 @@
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+                "sha256:7d5d014b7daa8b0bf2eaef684295acae12b036d79f54178b92a2b6a56f92278f",
+                "sha256:98f80dee3c03455e92796b58b98ff6ca0b2a6f652120c263efdba4d6c5e58f72",
+                "sha256:a94d55d142c9265f4ea46fab70977a1944ecae359ae867397757d836ea5a3f47",
+                "sha256:a9916d2bb8865f973824fb47436fa45e1ebf2efd920f2b9f99342cb7fab93f72",
+                "sha256:c542eeda69212fa10a7ada75e668876fdec5f856cd3d06829e6aa64ad17c8dfe",
+                "sha256:cf4afcfac006ece570e32d6fa90ab74a17245b83dfd6655a6f68568098345ff6",
+                "sha256:ebd9d7f80ccf7a82ac5f88c521115cc55d84e35bf8b446fcd7836eb6b98929a3",
+                "sha256:ed855bbe3eb3715fca349c80174cfcfd699c2f9de574d40527b8429acae23a66"
+            ],
+            "markers": "python_version >= '3.6'",
+            "version": "==1.5.4"
         },
         "typing-extensions": {
             "hashes": [
@@ -735,17 +1047,19 @@
         },
         "urllib3": {
             "hashes": [
-                "sha256:1b465e494e3e0d8939b50680403e3aedaa2bc434b7d5af64dfd3c958d7f5ae80",
-                "sha256:de3eedaad74a2683334e282005cd8d7f22f4d55fa690a2a1020a416cb0a47e73"
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             ],
-            "version": "==1.26.3"
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5'",
+            "version": "==1.26.14"
         },
         "wcmatch": {
             "hashes": [
-                "sha256:7ba09191f9582e82d864829bdfbab02df46e26a46a304e57c7fe5652f07f297a",
-                "sha256:9b05ec84da6c711d14191d30c19dffba0e31cdbdaec8819e44c75c8ef83cfadc"
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             ],
-            "version": "==8.1.1"
+            "markers": "python_version >= '3.7'",
+            "version": "==8.4.1"
         },
         "wrapt": {
             "hashes": [
@@ -755,10 +1069,11 @@
         },
         "xmltodict": {
             "hashes": [
-                "sha256:50d8c638ed7ecb88d90561beedbf720c9b4e851a9fa6c47ebd64e99d166d8a21",
-                "sha256:8bbcb45cc982f48b2ca8fe7e7827c5d792f217ecf1792626f808bf41c3b86051"
+                "sha256:341595a488e3e01a85a9d8911d8912fd922ede5fecc4dce437eb4b6c8d037e56",
+                "sha256:aa89e8fd76320154a40d19a0df04a4695fb9dc5ba977cbb68ab3e4eb225e7852"
             ],
-            "version": "==0.12.0"
+            "markers": "python_version >= '3.4'",
+            "version": "==0.13.0"
         },
         "yamllint": {
             "hashes": [
@@ -776,12 +1091,21 @@
             "index": "pypi",
             "version": "==2.12.0"
         },
+        "yte": {
+            "hashes": [
+                "sha256:6d0b315b78af83276d78f5f67c107c84238f772a76d74f4fc77905b46f3731f5",
+                "sha256:fd646bc47c355f202f14b7476996de4a31501cf1e107ac7ad8e19edcd786d30b"
+            ],
+            "markers": "python_version >= '3.7'",
+            "version": "==1.5.1"
+        },
         "zipp": {
             "hashes": [
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-                "sha256:ed5eee1974372595f9e416cc7bbeeb12335201d8081ca8a0743c954d4446e5cb"
+                "sha256:83a28fcb75844b5c0cdaf5aa4003c2d728c77e05f5aeabe8e95e56727005fbaa",
+                "sha256:a7a22e05929290a67401440b39690ae6563279bced5f314609d9d03798f56766"
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-            "version": "==3.4.0"
+            "markers": "python_version >= '3.7'",
+            "version": "==3.11.0"
         }
     },
     "develop": {}