Change the number of modules

[free-sky9527]

Hi!
When using the findModules() function, I wanted to change the number of modules and noticed that findModules() calls cutreeHybrid(). In cutreeHybrid(), there is a minModuleSize parameter. So, I executed:

pyWGCNA_object.findModules(kwargs_function={'cutreeHybrid': {'deepSplit': 2, 'pamRespectsDendro': False, 'minModuleSize': 50}})

However, I encountered an error: WGCNA.cutreeHybrid() got an unexpected keyword argument 'minModuleSize'.

I then checked the script wgcna.py at line 331 (see the image below) and found that minClusterSize is a fixed value, meaning it cannot be directly changed within the findModules() function.

However, I discovered that minModuleSize can be modified in the PyWGCNA.WGCNA() function.

I would like to ask why it is set up this way—is there a specific reason? If I want to change the number of modules, can I adjust the deepSplit parameter in findModules() and the minModuleSize in PyWGCNA.WGCNA()? Or are there other parameters I can tweak?

Thanks.