diff --git a/docs/index.md b/docs/index.md index a1022b3be..fbd8b685b 100644 --- a/docs/index.md +++ b/docs/index.md @@ -17,7 +17,7 @@ Please see the Setup page on the left for more detailed instructions. OntoGPT runs on the command line, though there's also a minimal web app interface (see `Web Application` section below). -1. Ensure you have Python 3.9 or greater installed. +1. Ensure you have Python (3.9 to 3.12) installed. 2. Install with `pip`: ```bash diff --git a/poetry.lock b/poetry.lock index 102d44fda..75cf2494a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -33,98 +33,98 @@ files = [ [[package]] name = "aiohappyeyeballs" -version = "2.4.3" +version = "2.4.4" description = "Happy Eyeballs for asyncio" optional = false python-versions = ">=3.8" files = [ - {file = "aiohappyeyeballs-2.4.3-py3-none-any.whl", hash = "sha256:8a7a83727b2756f394ab2895ea0765a0a8c475e3c71e98d43d76f22b4b435572"}, - {file = "aiohappyeyeballs-2.4.3.tar.gz", hash = "sha256:75cf88a15106a5002a8eb1dab212525c00d1f4c0fa96e551c9fbe6f09a621586"}, + {file = "aiohappyeyeballs-2.4.4-py3-none-any.whl", hash = "sha256:a980909d50efcd44795c4afeca523296716d50cd756ddca6af8c65b996e27de8"}, + {file = "aiohappyeyeballs-2.4.4.tar.gz", hash = "sha256:5fdd7d87889c63183afc18ce9271f9b0a7d32c2303e394468dd45d514a757745"}, ] [[package]] name = "aiohttp" -version = "3.11.7" +version = "3.11.10" description = "Async http client/server framework (asyncio)" 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Harry Caufield "] license = "BSD-3" diff --git a/src/ontogpt/converters/ontology_converter.py b/src/ontogpt/converters/ontology_converter.py index 3962867cc..30c06e36b 100644 --- a/src/ontogpt/converters/ontology_converter.py +++ b/src/ontogpt/converters/ontology_converter.py @@ -1,4 +1,24 @@ -"""Ontology converter.""" +"""Ontology converter. + +This module provides functionality for working with ontologies. +It includes methods to extract seed ontologies, +convert from an OAK adapter, +and convert from an OBO Graph. + +Classes: + OntologyConverter: A class to handle the conversion of an + OAK ontology to an OntoGPT schema. + +Methods: + __post_init__: Initializes the SchemaView with the path to + the template. + extract_seed_ontology: Extracts an ontology from a given + list of seed terms and predicates. + from_adapter: Converts an OAK adapter to an Ontology. + from_obograph: Converts an OBO Graph to an Ontology. + node_to_name: Converts a node to a name using its CURIE + and optional label. +""" import logging from dataclasses import dataclass, field