test-backend.yaml

name: Test Backend

on:
  pull_request:
  workflow_dispatch:

env:
  PYTHONPATH: ${{ github.workspace }}/backend

# defaults:
#   run:
#     working-directory: ./backend

jobs:
  test-backend:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        python-version: ["3.9", "3.10", "3.11"]
        os: [ubuntu-latest]
        #os: [ ubuntu-latest, windows-latest ]

    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      #----------------------------------------------
      #          install & configure poetry
      #----------------------------------------------
      - name: Install Poetry
        uses: snok/install-poetry@v1

      #----------------------------------------------
      #    install your root project, if required
      #----------------------------------------------
      - name: Install library
        run: poetry -C backend install --no-interaction

      #----------------------------------------------
      #              run pytest
      #----------------------------------------------
      - name: Run tests
        run: |
          poetry -C backend run pytest tests
        shell: bash

      #----------------------------------------------
      #              coverage report
      #----------------------------------------------
      - name: Generate coverage results
        run: |
          poetry -C backend run coverage run -m pytest tests
          poetry -C backend run coverage xml
          poetry -C backend run coverage report -m
        shell: bash

      #----------------------------------------------
      #           upload coverage results
      #----------------------------------------------
      - name: Upload coverage report
        if: github.repository == 'monarch-initiative/monarch-app'
        uses: codecov/codecov-action@v4
        with:
          name: codecov-results-${{ matrix.python-version }}
          token: ${{ secrets.CODECOV_TOKEN }}
          file: coverage.xml
          fail_ci_if_error: true