From 17ca275cfa9aa763493801a193168e3957e5a7c9 Mon Sep 17 00:00:00 2001 From: Gui~th Date: Tue, 7 Dec 2021 16:35:04 +0100 Subject: [PATCH] update genemap2 header content --- merge_db.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/merge_db.py b/merge_db.py index ea9ccc5..d519a19 100644 --- a/merge_db.py +++ b/merge_db.py @@ -42,8 +42,8 @@ def gnomad_score(file): def omim(file): omim = pd.read_csv(file, sep='\t',skiprows=3) - omim_select = omim[['Approved Symbol','Phenotypes']] - omim_select.rename(columns={'Approved Symbol': '#Gene_name'}, inplace=True) + omim_select = omim[['Approved Gene Symbol','Phenotypes']] + omim_select.rename(columns={'Approved Gene Symbol': '#Gene_name'}, inplace=True) omim_select = omim_select.dropna(subset=['#Gene_name']) omim_select = omim_select.sort_values(by=['#Gene_name']) omim_select = omim_select.fillna('')