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environment.yml
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name: phylomaf_env
channels:
- conda-forge
- https://conda.anaconda.org/domdfcoding
- https://conda.anaconda.org/conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- alabaster=0.7.12=py_0
- alsa-lib=1.2.3=h516909a_0
- apipkg=1.5=py_0
- attrs=21.2.0=pyhd8ed1ab_0
- babel=2.9.1=pyh44b312d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- biom-format=2.1.10=py39h16ac069_0
- biopython=1.79=py39h3811e60_0
- blosc=1.21.0=h9c3ff4c_0
- brotlipy=0.7.0=py39h3811e60_1001
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2021.5.30=ha878542_0
- cachecontrol=0.12.6=py_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2021.5.30=py39hf3d152e_0
- cffi=1.14.5=py39he32792d_0
- chardet=4.0.0=py39hf3d152e_1
- click=8.0.1=py39hf3d152e_0
- colorama=0.4.4=pyh9f0ad1d_0
- coverage=5.5=py39h3811e60_0
- cryptography=3.4.7=py39hbca0aa6_0
- cycler=0.10.0=py_2
- cython=0.29.23=py39he80948d_1
- dataclasses=0.8=pyhc8e2a94_1
- dateparser=1.0.0=pyhd3deb0d_0
- dbus=1.13.6=h48d8840_2
- decorator=5.0.9=pyhd8ed1ab_0
- docutils=0.16=py39hf3d152e_3
- ete3=3.1.2=pyh9f0ad1d_0
- execnet=1.8.1=pyhd8ed1ab_0
- expat=2.4.1=h9c3ff4c_0
- fontconfig=2.13.1=hba837de_1005
- freetype=2.10.4=h0708190_1
- future=0.18.2=py39hf3d152e_3
- fuzzywuzzy=0.18.0=pyhd8ed1ab_0
- gettext=0.19.8.1=h0b5b191_1005
- glib=2.68.3=h9c3ff4c_0
- glib-tools=2.68.3=h9c3ff4c_0
- gst-plugins-base=1.18.4=hf529b03_2
- gstreamer=1.18.4=h76c114f_2
- h5py=3.3.0=nompi_py39h98ba4bc_100
- hdf5=1.10.6=nompi_h6a2412b_1114
- hdmedians=0.14.2=py39hce5d2b2_0
- icu=68.1=h58526e2_0
- idna=2.10=pyh9f0ad1d_0
- imagesize=1.2.0=py_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipython=7.25.0=py39hef51801_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jedi=0.18.0=py39hf3d152e_2
- jinja2=3.0.1=pyhd8ed1ab_0
- joblib=1.0.1=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- kiwisolver=1.3.1=py39h1a9c180_1
- krb5=1.19.1=hcc1bbae_0
- latexcodec=2.0.1=pyh9f0ad1d_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- lerc=2.2.1=h9c3ff4c_0
- libblas=3.9.0=9_openblas
- libcblas=3.9.0=9_openblas
- libclang=11.1.0=default_ha53f305_1
- libcurl=7.77.0=h2574ce0_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=hcdb4288_3
- libffi=3.3=h58526e2_2
- libgcc-ng=9.3.0=h2828fa1_19
- libgfortran-ng=9.3.0=hff62375_19
- libgfortran5=9.3.0=hff62375_19
- libglib=2.68.3=h3e27bee_0
- libgomp=9.3.0=h2828fa1_19
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=9_openblas
- libllvm11=11.1.0=hf817b99_2
- libnghttp2=1.43.0=h812cca2_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.15=pthreads_h8fe5266_1
- libopus=1.3.1=h7f98852_1
- libpng=1.6.37=h21135ba_2
- libpq=13.3=hd57d9b9_0
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-ng=9.3.0=h6de172a_19
- libtiff=4.3.0=hf544144_1
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.0=h7f98852_2
- libxcb=1.13=h7f98852_1003
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.12=h72842e0_0
- libxslt=1.1.33=h15afd5d_2
- lockfile=0.12.2=py_1
- lxml=4.6.3=py39h107f48f_0
- lz4-c=1.9.3=h9c3ff4c_0
- lzo=2.10=h516909a_1000
- markupsafe=2.0.1=py39h3811e60_0
- matplotlib-base=3.4.2=py39h2fa2bec_0
- matplotlib-inline=0.1.2=pyhd8ed1ab_2
- mock=4.0.3=py39hf3d152e_1
- more-itertools=8.8.0=pyhd8ed1ab_0
- msgpack-python=1.0.2=py39h1a9c180_1
- mysql-common=8.0.25=ha770c72_2
- mysql-libs=8.0.25=hfa10184_2
- natsort=7.1.1=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nspr=4.30=h9c3ff4c_0
- nss=3.67=hb5efdd6_0
- numexpr=2.7.3=py39hde0f152_0
- numpy=1.21.0=py39hdbf815f_0
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1k=h7f98852_0
- packaging=20.9=pyh44b312d_0
- pandas=1.2.5=py39hde0f152_0
- parso=0.8.2=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.2.0=py39hf95b381_1
- pip=21.1.3=pyhd8ed1ab_0
- pluggy=0.13.1=py39hf3d152e_4
- prompt-toolkit=3.0.19=pyha770c72_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- py=1.10.0=pyhd3deb0d_0
- pybtex=0.24.0=py39hf3d152e_0
- pybtex-docutils=1.0.0=py39hf3d152e_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.9.0=pyhd8ed1ab_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.12.3=py39hf3d152e_7
- pyqt-impl=5.12.3=py39h0fcd23e_7
- pyqt5-sip=4.19.18=py39he80948d_7
- pyqtchart=5.12=py39h0fcd23e_7
- pyqtwebengine=5.12.1=py39h0fcd23e_7
- pysocks=1.7.1=py39hf3d152e_3
- pytables=3.6.1=py39hf6dc253_3
- pytest=6.2.4=py39hf3d152e_0
- pytest-cov=2.12.1=pyhd8ed1ab_0
- python=3.9.5=h49503c6_0_cpython
- python-dateutil=2.8.1=py_0
- python-levenshtein=0.12.2=py39h3811e60_0
- python_abi=3.9=2_cp39
- pytz=2021.1=pyhd8ed1ab_0
- pyyaml=5.4.1=py39h3811e60_0
- qt=5.12.9=hda022c4_4
- readline=8.1=h46c0cb4_0
- regex=2021.4.4=py39h3811e60_0
- requests=2.25.1=pyhd3deb0d_0
- scikit-bio=0.5.6=py39h16ac069_4
- scikit-learn=0.24.2=py39h4dfa638_0
- scipy=1.7.0=py39hee8e79c_0
- setuptools=49.6.0=py39hf3d152e_3
- six=1.16.0=pyh6c4a22f_0
- snowballstemmer=2.1.0=pyhd8ed1ab_0
- sphinx=4.0.2=pyh6c4a22f_1
- sphinx-copybutton=0.3.3=pyhd8ed1ab_0
- sphinx-prompt=1.4.0=pyhd8ed1ab_0
- sphinxcontrib-applehelp=1.0.2=py_0
- sphinxcontrib-bibtex=2.3.0=pyhd8ed1ab_0
- sphinxcontrib-devhelp=1.0.2=py_0
- sphinxcontrib-htmlhelp=2.0.0=pyhd8ed1ab_0
- sphinxcontrib-jsmath=1.0.1=py_0
- sphinxcontrib-qthelp=1.0.3=py_0
- sphinxcontrib-serializinghtml=1.1.5=pyhd8ed1ab_0
- sqlite=3.36.0=h9cd32fc_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=h21135ba_1
- toml=0.10.2=pyhd8ed1ab_0
- tornado=6.1=py39h3811e60_1
- traitlets=5.0.5=py_0
- tzdata=2021a=he74cb21_0
- tzlocal=2.1=pyh9f0ad1d_0
- urllib3=1.26.6=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.36.2=pyhd3deb0d_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- zlib=1.2.11=h516909a_1010
- zstd=1.5.0=ha95c52a_0
- pip:
- sphinx-git
- sphinx-hoverxref
- sphinx-rtd-theme