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NEWS
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CHANGES in VERSION 1.3.0
* parameters for legend are specified by a list
* vignette was split into several vignettes which focus on specific topics
* ColorMapping class suppoorts `at` and `labels`
* add `row_anno_*` and `column_anno_*` functions
* `anno_barplot` add `baseline` option to define the baseline of bars
* change default colors for matrix
=========================================
CHANGES in VERSION 1.2.8
* add decorate* functions
=========================================
CHANGES in VERSION 1.2.7
* add `rows_reorder_weight` and `columns_reorder_weight` in `Heatmap()`
* `draw,HeatmapList-method` returns a list of orders
* clustering is stored as dendrogram internally
=========================================
CHANGES in VERSION 1.2.6
* graphical parameters for row names can be set as same length
as row slices
* graphical parameters for annotation functions are consistent with
the matrix now
* insert `k = NULL` into anno_function if they are row annotations
* add a new vignette "quick examples"
* change style for continuous legend color bar
* label order of discrete legend has been adjusted (now it is from top to bottom)
=========================================
CHANGES in VERSION 1.2.5
* add dependency of base packages
=========================================
CHANGES in VERSION 1.2.4
* name for ColorMapping object has default value now.
* legend for continuous values can be set as continuous legends
* row title and column title as well as legend title support expression
* add `heatmap_legend_title` in `Heatmap` and `ColorMapping`
* fixed a bug in `plotDataFrame`
==========================================
CHANGES in VERSION 1.2.3
* `color_mapping_legend` can produce a continuous color legend
* `color_mapping_legend` now returns a grob object
===========================================
CHANGES in VERSION 1.2.2
* adjust positions for row titles
* rows can be split if `cluster_rows` are a clustering object
* `row_order` and `column_order` can be set by dimension names
===========================================
CHANGES in VERSION 1.2.1
* adjust orders of row slices
* support text rotation for heatmap titles
===========================================
CHANGES in VERSION 1.2.0
* correct row orders if km and row_order is set in `Heatmap`
===========================================
CHANGES in VERSION 1.1.9
* adjust names and size of each component
* add `densityHeatmap` function which visualizes column distribution
in a matrix
* add `plotDataFrame` function which provides a quick way to
visualize a data frame
============================================
CHANGES in VERSION 1.1.8
* dendrograms are implemented by `grid.segments`
* setting padding for each component
* adjust gaps between heatmaps/row annotations if the column of the
heatmap is zero.
============================================
CHANGES IN VERSION 1.1.7
* check consistency of matrix row names
=============================================
CHANGES IN VERSION 1.1.6
* improved generation of random colors
* order of heatmap annotation legends are same as the order of annotations
* support NA value in simple annotations
* add examples in the vignette
* simple row annotations now have the correct order
* `col` can be a vector of colors if matrix is continuous
* simple annotation can be logical
==============================================
CHANGES IN VERSION 1.1.5
* add gaps between heatmap components
===============================================
CHANGES IN VERSION 1.1.4
* support color mapping for NA values
===============================================
CHANGES IN VERSION 1.1.3
* Improved vignette to describe how to use row index in row annotation function
if row annotations are also splitted by rows.
===============================================
CHANGES IN VERSION 1.1.2
* `anno_density`: graphics are now in correct order
* add `anno_text`
* add new examples corresponding to new functions
================================================
CHANGES IN VERSION 1.1.1
* fixed a bug when setting `cluster_rows` to FALSE but still cluster
on rows.
* add `rowAnnotation` and `columnAnnotation` functions
* add examples in the vignette
* No error if the heatmap list only contains zero-column matrix
=================================================
CHANGES IN VERSION 0.99.2
* add two examples in vignette
* add chunk labels in the vignette
=================================================
CHANGES IN VERSION 0.99.1
* x and y in `cell_fun` are now `unit` objects.
=================================================
CHANGES IN VERSION 0.99.0
* First release