From 0752141fdc6dbf88f66e19ed0b034c6a620feb47 Mon Sep 17 00:00:00 2001 From: john Date: Sat, 26 Oct 2024 01:29:20 +0200 Subject: [PATCH] add links to pipelines from the respective pipeops --- R/PipeOpPredClassifSurvDiscTime.R | 2 +- R/PipeOpPredClassifSurvIPCW.R | 2 +- R/PipeOpSurvAvg.R | 1 + R/PipeOpTaskSurvClassifDiscTime.R | 2 +- R/PipeOpTaskSurvClassifIPCW.R | 2 +- man/mlr_pipeops_survavg.Rd | 6 +----- man/mlr_pipeops_trafopred_classifsurv_IPCW.Rd | 7 +------ man/mlr_pipeops_trafopred_classifsurv_disctime.Rd | 7 +------ man/mlr_pipeops_trafotask_survclassif_IPCW.Rd | 7 +------ man/mlr_pipeops_trafotask_survclassif_disctime.Rd | 7 +------ 10 files changed, 10 insertions(+), 33 deletions(-) diff --git a/R/PipeOpPredClassifSurvDiscTime.R b/R/PipeOpPredClassifSurvDiscTime.R index 9de1203e6..a9fa17587 100644 --- a/R/PipeOpPredClassifSurvDiscTime.R +++ b/R/PipeOpPredClassifSurvDiscTime.R @@ -34,7 +34,7 @@ #' #' @references #' `r format_bib("tutz_2016")` -#' @family PipeOps +#' @seealso [pipeline_survtoclassif_disctime] #' @family Transformation PipeOps #' @export PipeOpPredClassifSurvDiscTime = R6Class("PipeOpPredClassifSurvDiscTime", diff --git a/R/PipeOpPredClassifSurvIPCW.R b/R/PipeOpPredClassifSurvIPCW.R index dffff1e70..b5e6b8b57 100644 --- a/R/PipeOpPredClassifSurvIPCW.R +++ b/R/PipeOpPredClassifSurvIPCW.R @@ -36,7 +36,7 @@ #' @references #' `r format_bib("vock_2016")` #' -#' @family PipeOps +#' @seealso [pipeline_survtoclassif_IPCW] #' @family Transformation PipeOps #' @export PipeOpPredClassifSurvIPCW = R6Class("PipeOpPredClassifSurvIPCW", diff --git a/R/PipeOpSurvAvg.R b/R/PipeOpSurvAvg.R index d9ac42263..862348842 100644 --- a/R/PipeOpSurvAvg.R +++ b/R/PipeOpSurvAvg.R @@ -30,6 +30,7 @@ #' Inherits from [PipeOpEnsemble][mlr3pipelines::PipeOpEnsemble] by implementing the #' `private$weighted_avg_predictions()` method. #' +#' @seealso [pipeline_survaverager] #' @family PipeOps #' @family Ensembles #' @export diff --git a/R/PipeOpTaskSurvClassifDiscTime.R b/R/PipeOpTaskSurvClassifDiscTime.R index ec8617797..ed600fede 100644 --- a/R/PipeOpTaskSurvClassifDiscTime.R +++ b/R/PipeOpTaskSurvClassifDiscTime.R @@ -81,7 +81,7 @@ #' @references #' `r format_bib("tutz_2016")` #' -#' @family PipeOps +#' @seealso [pipeline_survtoclassif_disctime] #' @family Transformation PipeOps #' @export PipeOpTaskSurvClassifDiscTime = R6Class("PipeOpTaskSurvClassifDiscTime", diff --git a/R/PipeOpTaskSurvClassifIPCW.R b/R/PipeOpTaskSurvClassifIPCW.R index 4d54d1313..4c9de1549 100644 --- a/R/PipeOpTaskSurvClassifIPCW.R +++ b/R/PipeOpTaskSurvClassifIPCW.R @@ -61,7 +61,7 @@ #' @references #' `r format_bib("vock_2016")` #' -#' @family PipeOps +#' @seealso [pipeline_survtoclassif_IPCW] #' @family Transformation PipeOps #' @examplesIf mlr3misc::require_namespaces(c("mlr3pipelines", "mlr3learners"), quietly = TRUE) #' \dontrun{ diff --git a/man/mlr_pipeops_survavg.Rd b/man/mlr_pipeops_survavg.Rd index 43a4920ad..aa56240e5 100644 --- a/man/mlr_pipeops_survavg.Rd +++ b/man/mlr_pipeops_survavg.Rd @@ -57,11 +57,7 @@ Inherits from \link[mlr3pipelines:PipeOpEnsemble]{PipeOpEnsemble} by implementin \dontshow{\}) # examplesIf} } \seealso{ -Other PipeOps: -\code{\link{mlr_pipeops_trafopred_classifsurv_IPCW}}, -\code{\link{mlr_pipeops_trafopred_classifsurv_disctime}}, -\code{\link{mlr_pipeops_trafotask_survclassif_IPCW}}, -\code{\link{mlr_pipeops_trafotask_survclassif_disctime}} +\link{pipeline_survaverager} } \concept{Ensembles} \concept{PipeOps} diff --git a/man/mlr_pipeops_trafopred_classifsurv_IPCW.Rd b/man/mlr_pipeops_trafopred_classifsurv_IPCW.Rd index a18a2202c..2cc6dff55 100644 --- a/man/mlr_pipeops_trafopred_classifsurv_IPCW.Rd +++ b/man/mlr_pipeops_trafopred_classifsurv_IPCW.Rd @@ -47,18 +47,13 @@ Vock, M D, Wolfson, Julian, Bandyopadhyay, Sunayan, Adomavicius, Gediminas, John \doi{https://doi.org/10.1016/j.jbi.2016.03.009}, \url{https://www.sciencedirect.com/science/article/pii/S1532046416000496}. } \seealso{ -Other PipeOps: -\code{\link{mlr_pipeops_survavg}}, -\code{\link{mlr_pipeops_trafopred_classifsurv_disctime}}, -\code{\link{mlr_pipeops_trafotask_survclassif_IPCW}}, -\code{\link{mlr_pipeops_trafotask_survclassif_disctime}} +\link{pipeline_survtoclassif_IPCW} Other Transformation PipeOps: \code{\link{mlr_pipeops_trafopred_classifsurv_disctime}}, \code{\link{mlr_pipeops_trafotask_survclassif_IPCW}}, \code{\link{mlr_pipeops_trafotask_survclassif_disctime}} } -\concept{PipeOps} \concept{Transformation PipeOps} \section{Super class}{ \code{\link[mlr3pipelines:PipeOp]{mlr3pipelines::PipeOp}} -> \code{PipeOpPredClassifSurvIPCW} diff --git a/man/mlr_pipeops_trafopred_classifsurv_disctime.Rd b/man/mlr_pipeops_trafopred_classifsurv_disctime.Rd index ed1b0ac0a..4a7db8b4c 100644 --- a/man/mlr_pipeops_trafopred_classifsurv_disctime.Rd +++ b/man/mlr_pipeops_trafopred_classifsurv_disctime.Rd @@ -48,18 +48,13 @@ Springer International Publishing. ISBN 978-3-319-28156-8 978-3-319-28158-2, \url{http://link.springer.com/10.1007/978-3-319-28158-2}. } \seealso{ -Other PipeOps: -\code{\link{mlr_pipeops_survavg}}, -\code{\link{mlr_pipeops_trafopred_classifsurv_IPCW}}, -\code{\link{mlr_pipeops_trafotask_survclassif_IPCW}}, -\code{\link{mlr_pipeops_trafotask_survclassif_disctime}} +\link{pipeline_survtoclassif_disctime} Other Transformation PipeOps: \code{\link{mlr_pipeops_trafopred_classifsurv_IPCW}}, \code{\link{mlr_pipeops_trafotask_survclassif_IPCW}}, \code{\link{mlr_pipeops_trafotask_survclassif_disctime}} } -\concept{PipeOps} \concept{Transformation PipeOps} \section{Super class}{ \code{\link[mlr3pipelines:PipeOp]{mlr3pipelines::PipeOp}} -> \code{PipeOpPredClassifSurvDiscTime} diff --git a/man/mlr_pipeops_trafotask_survclassif_IPCW.Rd b/man/mlr_pipeops_trafotask_survclassif_IPCW.Rd index 6522a45cc..be486afb3 100644 --- a/man/mlr_pipeops_trafotask_survclassif_IPCW.Rd +++ b/man/mlr_pipeops_trafotask_survclassif_IPCW.Rd @@ -113,18 +113,13 @@ Vock, M D, Wolfson, Julian, Bandyopadhyay, Sunayan, Adomavicius, Gediminas, John \doi{https://doi.org/10.1016/j.jbi.2016.03.009}, \url{https://www.sciencedirect.com/science/article/pii/S1532046416000496}. } \seealso{ -Other PipeOps: -\code{\link{mlr_pipeops_survavg}}, -\code{\link{mlr_pipeops_trafopred_classifsurv_IPCW}}, -\code{\link{mlr_pipeops_trafopred_classifsurv_disctime}}, -\code{\link{mlr_pipeops_trafotask_survclassif_disctime}} +\link{pipeline_survtoclassif_IPCW} Other Transformation PipeOps: \code{\link{mlr_pipeops_trafopred_classifsurv_IPCW}}, \code{\link{mlr_pipeops_trafopred_classifsurv_disctime}}, \code{\link{mlr_pipeops_trafotask_survclassif_disctime}} } -\concept{PipeOps} \concept{Transformation PipeOps} \section{Super class}{ \code{\link[mlr3pipelines:PipeOp]{mlr3pipelines::PipeOp}} -> \code{PipeOpTaskSurvClassifIPCW} diff --git a/man/mlr_pipeops_trafotask_survclassif_disctime.Rd b/man/mlr_pipeops_trafotask_survclassif_disctime.Rd index fccb10a0b..02966e8d2 100644 --- a/man/mlr_pipeops_trafotask_survclassif_disctime.Rd +++ b/man/mlr_pipeops_trafotask_survclassif_disctime.Rd @@ -98,18 +98,13 @@ Springer International Publishing. ISBN 978-3-319-28156-8 978-3-319-28158-2, \url{http://link.springer.com/10.1007/978-3-319-28158-2}. } \seealso{ -Other PipeOps: -\code{\link{mlr_pipeops_survavg}}, -\code{\link{mlr_pipeops_trafopred_classifsurv_IPCW}}, -\code{\link{mlr_pipeops_trafopred_classifsurv_disctime}}, -\code{\link{mlr_pipeops_trafotask_survclassif_IPCW}} +\link{pipeline_survtoclassif_disctime} Other Transformation PipeOps: \code{\link{mlr_pipeops_trafopred_classifsurv_IPCW}}, \code{\link{mlr_pipeops_trafopred_classifsurv_disctime}}, \code{\link{mlr_pipeops_trafotask_survclassif_IPCW}} } -\concept{PipeOps} \concept{Transformation PipeOps} \section{Super class}{ \code{\link[mlr3pipelines:PipeOp]{mlr3pipelines::PipeOp}} -> \code{PipeOpTaskSurvClassifDiscTime}