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"time": "2022-02-22T21:35:59+00:00" + "time": "2022-09-28T16:31:49+00:00" }, { "name": "zbateson/mb-wrapper", @@ -10856,16 +11222,16 @@ }, { "name": "zbateson/stream-decorators", - "version": "1.0.6", + "version": "1.0.7", "source": { "type": "git", "url": "https://github.com/zbateson/stream-decorators.git", - "reference": "3403c4323bd1cd15fe54348b031b26b064c706af" + "reference": "8f8ca208572963258b7e6d91106181706deacd10" }, "dist": { "type": "zip", - "url": "https://api.github.com/repos/zbateson/stream-decorators/zipball/3403c4323bd1cd15fe54348b031b26b064c706af", - "reference": "3403c4323bd1cd15fe54348b031b26b064c706af", + "url": "https://api.github.com/repos/zbateson/stream-decorators/zipball/8f8ca208572963258b7e6d91106181706deacd10", + "reference": "8f8ca208572963258b7e6d91106181706deacd10", "shasum": "" }, "require": { @@ -10905,7 +11271,7 @@ ], "support": { "issues": "https://github.com/zbateson/stream-decorators/issues", - "source": "https://github.com/zbateson/stream-decorators/tree/1.0.6" + "source": "https://github.com/zbateson/stream-decorators/tree/1.0.7" }, "funding": [ { @@ -10913,7 +11279,7 @@ "type": "github" } ], - "time": "2021-07-08T19:01:59+00:00" + "time": "2022-09-08T15:44:55+00:00" } ], "aliases": [], diff --git a/src/FluidXPlate/FluidXPlate.php b/src/FluidXPlate/FluidXPlate.php index 2f7f801..401a4d4 100644 --- a/src/FluidXPlate/FluidXPlate.php +++ b/src/FluidXPlate/FluidXPlate.php @@ -2,27 +2,30 @@ namespace Mll\LiquidHandlingRobotics\FluidXPlate; +use Illuminate\Support\Collection; use Mll\Microplate\Coordinate; use Mll\Microplate\CoordinateSystem96Well; +use Mll\Microplate\Enums\FlowDirection; use Mll\Microplate\Microplate; -/** - * @phpstan-extends Microplate - */ -final class FluidXPlate extends Microplate +final class FluidXPlate { public const FLUIDX_BARCODE_REGEX = /* @lang RegExp */ '/[A-Z]{2}(\d){8}/'; public string $rackId; + /** + * @var Microplate + */ + private Microplate $microplate; + public function __construct(string $rackId) { if (0 === \Safe\preg_match(self::FLUIDX_BARCODE_REGEX, $rackId)) { throw new InvalidRackIdException($rackId); } $this->rackId = $rackId; - - parent::__construct(self::coordinateSystem()); + $this->microplate = new Microplate(self::coordinateSystem()); } public static function coordinateSystem(): CoordinateSystem96Well @@ -33,12 +36,44 @@ public static function coordinateSystem(): CoordinateSystem96Well /** * @param Coordinate $coordinate */ - public function addWell(Coordinate $coordinate, $barcode): void + public function addWell(Coordinate $coordinate, string $barcode): void { if (0 === \Safe\preg_match(self::FLUIDX_BARCODE_REGEX, $barcode)) { throw new InvalidTubeBarcodeException($barcode); } - parent::addWell($coordinate, $barcode); + $this->microplate->addWell($coordinate, $barcode); + } + + /** + * @return Coordinate + */ + public function addToNextFreeWell(string $content, FlowDirection $flowDirection): Coordinate + { + return $this->microplate->addToNextFreeWell($content, $flowDirection); + } + + /** + * @return Collection + */ + public function wells(): Collection + { + return $this->microplate->wells(); + } + + /** + * @return Collection + */ + public function freeWells(): Collection + { + return $this->microplate->freeWells(); + } + + /** + * @return Collection + */ + public function filledWells(): Collection + { + return $this->microplate->filledWells(); } } diff --git a/src/FluidXPlate/FluidXPlateException.php b/src/FluidXPlate/FluidXPlateException.php index 12e5b51..0b2da9a 100644 --- a/src/FluidXPlate/FluidXPlateException.php +++ b/src/FluidXPlate/FluidXPlateException.php @@ -2,8 +2,6 @@ namespace Mll\LiquidHandlingRobotics\FluidXPlate; -use Exception; - -abstract class FluidXPlateException extends Exception +abstract class FluidXPlateException extends \Exception { } diff --git a/src/FluidXPlate/Scalars/FluidXBarcode.php b/src/FluidXPlate/Scalars/FluidXBarcode.php new file mode 100644 index 0000000..2bdde05 --- /dev/null +++ b/src/FluidXPlate/Scalars/FluidXBarcode.php @@ -0,0 +1,16 @@ +value); + throw new \Exception('Type not defined for ' . $this->value); } } diff --git a/src/TecanScanner/TecanScanException.php b/src/TecanScanner/TecanScanException.php index 8bb668c..06d1d39 100644 --- a/src/TecanScanner/TecanScanException.php +++ b/src/TecanScanner/TecanScanException.php @@ -2,8 +2,6 @@ namespace Mll\LiquidHandlingRobotics\TecanScanner; -use Exception; - -abstract class TecanScanException extends Exception +abstract class TecanScanException extends \Exception { } diff --git a/src/TecanScanner/TecanScanner.php b/src/TecanScanner/TecanScanner.php index d9fb600..5daf0ed 100644 --- a/src/TecanScanner/TecanScanner.php +++ b/src/TecanScanner/TecanScanner.php @@ -46,7 +46,7 @@ public static function parseRawContent(string $rawContent): FluidXPlate $plate->addWell( Coordinate::fromString( $coordinateString, - $plate->coordinateSystem + $plate::coordinateSystem() ), $barcode ); diff --git a/tests/Unit/FluidXPlate/FluidXPlateTest.php b/tests/Unit/FluidXPlate/FluidXPlateTest.php index 0efc6e1..def788d 100644 --- a/tests/Unit/FluidXPlate/FluidXPlateTest.php +++ b/tests/Unit/FluidXPlate/FluidXPlateTest.php @@ -7,8 +7,8 @@ use Mll\LiquidHandlingRobotics\FluidXPlate\InvalidTubeBarcodeException; use Mll\Microplate\Coordinate; use Mll\Microplate\CoordinateSystem96Well; +use Mll\Microplate\Enums\FlowDirection; use PHPUnit\Framework\TestCase; -use TypeError; final class FluidXPlateTest extends TestCase { @@ -53,8 +53,17 @@ public function testCanOnlyAddStringAsBarcode(): void $fluidXPlate = new FluidXPlate($rackId); $coordinate = Coordinate::fromString('A1', new CoordinateSystem96Well()); - $this->expectException(TypeError::class); + $this->expectException(\TypeError::class); // @phpstan-ignore-next-line intentionally wrong $fluidXPlate->addWell($coordinate, []); } + + public function testCanAddToNextFreeWell(): void + { + $rackId = 'AB12345678'; + $fluidXPlate = new FluidXPlate($rackId); + $expectedCoordinate = Coordinate::fromString('A1', new CoordinateSystem96Well()); + $addToNextFreeWell = $fluidXPlate->addToNextFreeWell('test', FlowDirection::COLUMN()); + self::assertEquals($expectedCoordinate, $addToNextFreeWell); + } } diff --git a/tests/Unit/FluidXPlate/Scalars/FluidXBarcodeTest.php b/tests/Unit/FluidXPlate/Scalars/FluidXBarcodeTest.php new file mode 100644 index 0000000..aab5902 --- /dev/null +++ b/tests/Unit/FluidXPlate/Scalars/FluidXBarcodeTest.php @@ -0,0 +1,43 @@ +expectExceptionObject(new InvariantViolation('The given value "foo123445" did not match the regex /[A-Z]{2}(\d){8}/.')); + + (new FluidXBarcode())->serialize('foo123445'); + } + + public function testSerializePassesWhenIsValid(): void + { + $input = 'AZ12345678'; + $serializedResult = (new FluidXBarcode())->serialize($input); + + self::assertSame($input, $serializedResult); + } + + public function testParseValueThrowsIfIsInvalid(): void + { + $this->expectException(Error::class); + $this->expectExceptionMessage('The given value "foo123445" did not match the regex /[A-Z]{2}(\d){8}/.'); + + (new FluidXBarcode())->parseValue('foo123445'); + } + + public function testParseValuePassesIfIsValid(): void + { + $input = 'AZ12345678'; + self::assertSame( + $input, + (new FluidXBarcode())->parseValue($input) + ); + } +} diff --git a/tests/Unit/FluidXPlate/Scalars/FrameStarBarcodeTest.php b/tests/Unit/FluidXPlate/Scalars/FrameStarBarcodeTest.php new file mode 100644 index 0000000..0cfce43 --- /dev/null +++ b/tests/Unit/FluidXPlate/Scalars/FrameStarBarcodeTest.php @@ -0,0 +1,44 @@ +expectException(InvariantViolation::class); + $this->expectExceptionMessage('The given value "foo" did not match the regex /[A-Z]{2}(\d){6}/.'); + + (new FrameStarBarcode())->serialize('foo'); + } + + public function testSerializePassesWhenIsValid(): void + { + $input = 'AZ123456'; + $serializedResult = (new FrameStarBarcode())->serialize($input); + + self::assertSame($input, $serializedResult); + } + + public function testParseValueThrowsIfIsInvalid(): void + { + $this->expectException(Error::class); + $this->expectExceptionMessage('The given value "bar" did not match the regex /[A-Z]{2}(\d){6}/.'); + + (new FrameStarBarcode())->parseValue('bar'); + } + + public function testParseValuePassesIfIsValid(): void + { + $input = 'AZ123456'; + self::assertSame( + $input, + (new FrameStarBarcode())->parseValue($input) + ); + } +} diff --git a/tests/Unit/Tecan/BasicCommands/CommentTest.php b/tests/Unit/Tecan/BasicCommands/CommentTest.php index 14a1023..a5e53f1 100644 --- a/tests/Unit/Tecan/BasicCommands/CommentTest.php +++ b/tests/Unit/Tecan/BasicCommands/CommentTest.php @@ -12,6 +12,6 @@ public function testFormatToString(): void $text = 'foo. bar'; $comment = new Comment($text); - self::assertSame("C;$text", $comment->toString()); + self::assertSame("C;{$text}", $comment->toString()); } }