diff --git a/Sample Input FASTA/sarsCov2DataExtract.py b/Sample Input FASTA/sarsCov2DataExtract.py index 4086a02..8feefef 100644 --- a/Sample Input FASTA/sarsCov2DataExtract.py +++ b/Sample Input FASTA/sarsCov2DataExtract.py @@ -1,7 +1,7 @@ from Bio import Entrez, SeqIO import requests -# replace with YOUR email id. +# replace with YOUR email id. This here is mine: Entrez.email = "mkayasth@ramapo.edu" # mapping accession numbers to strain names @@ -15,15 +15,10 @@ "OR829491": "CH.1.1", "PP250483": "BF.10", "PP316714": "JN.1", - "PP435534": "HV.1", - "OQ437945": "B.1.1.7", - "PP421053": "P.1", - "PP299611": "B.1.617.2", - "PP292591": "BE.1", - "OQ938406": "DN.2" + "PP435534": "HV.1" } -output_file = "tool_input.fasta" +output_file = "sample_input.fasta" with open(output_file, 'w') as outfile: for accession, strain_name in accession_to_strain.items():