From fbfd68fc6583edf7d60f940fbc5caba85c8957f7 Mon Sep 17 00:00:00 2001 From: GitHub actions Date: Mon, 24 Feb 2025 10:02:05 +0000 Subject: [PATCH] Update documentation --- .../plot_variable_importance_classif.zip | Bin 22104 -> 22104 bytes .../auto_examples_python.zip | Bin 54223 -> 54223 bytes .../plot_dcrt_example.zip | Bin 6608 -> 6608 bytes .../plot_knockoff_aggregation.zip | Bin 10079 -> 10079 bytes .../plot_fmri_data_example.zip | Bin 30846 -> 30846 bytes .../auto_examples_jupyter.zip | Bin 67070 -> 67070 bytes ...t_diabetes_variable_importance_example.zip | Bin 21186 -> 21186 bytes .../plot_2D_simulation_example.zip | Bin 30558 -> 30558 bytes .../plot_2D_simulation_example.rst.txt | 2 +- .../auto_examples/plot_dcrt_example.rst.txt | 4 +-- ...abetes_variable_importance_example.rst.txt | 4 +-- .../plot_fmri_data_example.rst.txt | 15 +++------ .../plot_knockoff_aggregation.rst.txt | 4 +-- .../plot_variable_importance_classif.rst.txt | 6 ++-- .../auto_examples/sg_execution_times.rst.txt | 24 +++++++------- docs/_sources/sg_execution_times.rst.txt | 24 +++++++------- docs/_static/basic.css | 8 ----- docs/_static/documentation_options.js | 2 +- docs/api.html | 8 ++--- docs/auto_examples/index.html | 6 ++-- .../plot_2D_simulation_example.html | 8 ++--- docs/auto_examples/plot_dcrt_example.html | 10 +++--- ..._diabetes_variable_importance_example.html | 10 +++--- .../auto_examples/plot_fmri_data_example.html | 26 +++++---------- .../plot_knockoff_aggregation.html | 10 +++--- .../plot_variable_importance_classif.html | 12 +++---- docs/auto_examples/sg_execution_times.html | 30 +++++++++--------- docs/generated/hidimstat.CPI.html | 6 ++-- docs/generated/hidimstat.LOCO.html | 6 ++-- .../hidimstat.PermutationImportance.html | 6 ++-- .../hidimstat.aggregate_quantiles.html | 6 ++-- .../hidimstat.clustered_inference.html | 6 ++-- docs/generated/hidimstat.data_simulation.html | 6 ++-- .../hidimstat.desparsified_lasso.html | 6 ++-- .../hidimstat.empirical_thresholding.html | 6 ++-- ...idimstat.ensemble_clustered_inference.html | 6 ++-- docs/generated/hidimstat.group_reid.html | 8 ++--- docs/generated/hidimstat.hd_inference.html | 6 ++-- .../hidimstat.knockoff_aggregation.html | 6 ++-- .../generated/hidimstat.model_x_knockoff.html | 6 ++-- .../hidimstat.multivariate_1D_simulation.html | 6 ++-- .../generated/hidimstat.permutation_test.html | 6 ++-- .../hidimstat.permutation_test_pval.html | 6 ++-- docs/generated/hidimstat.reid.html | 6 ++-- .../generated/hidimstat.zscore_from_pval.html | 6 ++-- docs/genindex.html | 6 ++-- docs/index.html | 6 ++-- docs/py-modindex.html | 6 ++-- docs/search.html | 6 ++-- docs/searchindex.js | 2 +- docs/sg_execution_times.html | 30 +++++++++--------- 51 files changed, 178 insertions(+), 201 deletions(-) diff --git a/docs/_downloads/06bb0f682e15138dfd659b791a14e9c6/plot_variable_importance_classif.zip 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b/docs/_sources/auto_examples/plot_2D_simulation_example.rst.txt index ab822fb0..4ab603a8 100644 --- a/docs/_sources/auto_examples/plot_2D_simulation_example.rst.txt +++ b/docs/_sources/auto_examples/plot_2D_simulation_example.rst.txt @@ -554,7 +554,7 @@ randomization. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (1 minutes 6.937 seconds) + **Total running time of the script:** (1 minutes 6.067 seconds) **Estimated memory usage:** 722 MB diff --git a/docs/_sources/auto_examples/plot_dcrt_example.rst.txt b/docs/_sources/auto_examples/plot_dcrt_example.rst.txt index cc6ef1e7..359060ff 100644 --- a/docs/_sources/auto_examples/plot_dcrt_example.rst.txt +++ b/docs/_sources/auto_examples/plot_dcrt_example.rst.txt @@ -162,9 +162,9 @@ Plotting the comparison .. rst-class:: sphx-glr-timing - **Total running time of the script:** (1 minutes 2.862 seconds) + **Total running time of the script:** (1 minutes 2.848 seconds) -**Estimated memory usage:** 657 MB +**Estimated memory usage:** 658 MB .. _sphx_glr_download_auto_examples_plot_dcrt_example.py: diff --git a/docs/_sources/auto_examples/plot_diabetes_variable_importance_example.rst.txt b/docs/_sources/auto_examples/plot_diabetes_variable_importance_example.rst.txt index 6c2005ef..495bcac4 100644 --- a/docs/_sources/auto_examples/plot_diabetes_variable_importance_example.rst.txt +++ b/docs/_sources/auto_examples/plot_diabetes_variable_importance_example.rst.txt @@ -491,9 +491,9 @@ Analyze the results .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 9.310 seconds) + **Total running time of the script:** (0 minutes 9.200 seconds) -**Estimated memory usage:** 643 MB +**Estimated memory usage:** 641 MB .. _sphx_glr_download_auto_examples_plot_diabetes_variable_importance_example.py: diff --git a/docs/_sources/auto_examples/plot_fmri_data_example.rst.txt b/docs/_sources/auto_examples/plot_fmri_data_example.rst.txt index 68166b4e..fc9348b9 100644 --- a/docs/_sources/auto_examples/plot_fmri_data_example.rst.txt +++ b/docs/_sources/auto_examples/plot_fmri_data_example.rst.txt @@ -185,13 +185,8 @@ You may choose a subject in [1, 2, 3, 4, 5, 6]. By default subject=2. [fetch_single_file] ...done. (0 seconds, 0 min) [fetch_single_file] Downloading data from http://data.pymvpa.org/datasets/haxby2001/subj2-2010.01.14.tar.gz ... - [_chunk_report_] Downloaded 25632768 of 291168628 bytes (8.8%%, 10.6s remaining) - [_chunk_report_] Downloaded 78495744 of 291168628 bytes (27.0%%, 5.5s remaining) - [_chunk_report_] Downloaded 130367488 of 291168628 bytes (44.8%%, 3.8s remaining) - [_chunk_report_] Downloaded 182558720 of 291168628 bytes (62.7%%, 2.4s remaining) - [_chunk_report_] Downloaded 235618304 of 291168628 bytes (80.9%%, 1.2s remaining) - [_chunk_report_] Downloaded 288915456 of 291168628 bytes (99.2%%, 0.0s remaining) - [fetch_single_file] ...done. (6 seconds, 0 min) + [_chunk_report_] Downloaded 141983744 of 291168628 bytes (48.8%%, 1.1s remaining) + [fetch_single_file] ...done. (2 seconds, 0 min) [uncompress_file] Extracting data from /home/runner/nilearn_data/haxby2001/9cabe068089e791ef0c5fe930fc20e30/subj2-2010.01.14.tar.gz... [uncompress_file] .. done. @@ -380,7 +375,7 @@ However you might benefit from clustering randomization taking .. code-block:: none [Parallel(n_jobs=2)]: Using backend LokyBackend with 2 concurrent workers. - [Parallel(n_jobs=2)]: Done 5 out of 5 | elapsed: 34.5s finished + [Parallel(n_jobs=2)]: Done 5 out of 5 | elapsed: 34.2s finished @@ -625,9 +620,9 @@ spurious discoveries. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (1 minutes 26.829 seconds) + **Total running time of the script:** (1 minutes 21.342 seconds) -**Estimated memory usage:** 3222 MB +**Estimated memory usage:** 3181 MB .. _sphx_glr_download_auto_examples_plot_fmri_data_example.py: diff --git a/docs/_sources/auto_examples/plot_knockoff_aggregation.rst.txt b/docs/_sources/auto_examples/plot_knockoff_aggregation.rst.txt index 5a0244ae..9234304d 100644 --- a/docs/_sources/auto_examples/plot_knockoff_aggregation.rst.txt +++ b/docs/_sources/auto_examples/plot_knockoff_aggregation.rst.txt @@ -205,9 +205,9 @@ Imports needed for this script .. rst-class:: sphx-glr-timing - **Total running time of the script:** (5 minutes 36.139 seconds) + **Total running time of the script:** (5 minutes 37.576 seconds) -**Estimated memory usage:** 821 MB +**Estimated memory usage:** 809 MB .. _sphx_glr_download_auto_examples_plot_knockoff_aggregation.py: diff --git a/docs/_sources/auto_examples/plot_variable_importance_classif.rst.txt b/docs/_sources/auto_examples/plot_variable_importance_classif.rst.txt index c92b672a..5f525232 100644 --- a/docs/_sources/auto_examples/plot_variable_importance_classif.rst.txt +++ b/docs/_sources/auto_examples/plot_variable_importance_classif.rst.txt @@ -176,7 +176,7 @@ Visualize the data .. code-block:: none - [, , , , , , , , , ] + [, , , , , , , , , ] @@ -422,14 +422,14 @@ the features. .. code-block:: none - + .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 44.470 seconds) + **Total running time of the script:** (0 minutes 44.197 seconds) **Estimated memory usage:** 639 MB diff --git a/docs/_sources/auto_examples/sg_execution_times.rst.txt b/docs/_sources/auto_examples/sg_execution_times.rst.txt index 361b78ee..89826051 100644 --- a/docs/_sources/auto_examples/sg_execution_times.rst.txt +++ b/docs/_sources/auto_examples/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**10:06.547** total execution time for 6 files **from auto_examples**: +**10:01.230** total execution time for 6 files **from auto_examples**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_plot_knockoff_aggregation.py` (``plot_knockoff_aggregation.py``) - - 05:36.139 - - 821.2 + - 05:37.576 + - 809.4 * - :ref:`sphx_glr_auto_examples_plot_fmri_data_example.py` (``plot_fmri_data_example.py``) - - 01:26.829 - - 3222.1 + - 01:21.342 + - 3181.3 * - :ref:`sphx_glr_auto_examples_plot_2D_simulation_example.py` (``plot_2D_simulation_example.py``) - - 01:06.937 - - 722.2 + - 01:06.067 + - 722.1 * - :ref:`sphx_glr_auto_examples_plot_dcrt_example.py` (``plot_dcrt_example.py``) - - 01:02.862 - - 657.4 + - 01:02.848 + - 657.8 * - :ref:`sphx_glr_auto_examples_plot_variable_importance_classif.py` (``plot_variable_importance_classif.py``) - - 00:44.470 + - 00:44.197 - 638.9 * - :ref:`sphx_glr_auto_examples_plot_diabetes_variable_importance_example.py` (``plot_diabetes_variable_importance_example.py``) - - 00:09.310 - - 642.8 + - 00:09.200 + - 640.5 diff --git a/docs/_sources/sg_execution_times.rst.txt b/docs/_sources/sg_execution_times.rst.txt index 959a1995..069dae4b 100644 --- a/docs/_sources/sg_execution_times.rst.txt +++ b/docs/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**10:06.547** total execution time for 6 files **from all galleries**: +**10:01.230** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_plot_knockoff_aggregation.py` (``../examples/plot_knockoff_aggregation.py``) - - 05:36.139 - - 821.2 + - 05:37.576 + - 809.4 * - :ref:`sphx_glr_auto_examples_plot_fmri_data_example.py` (``../examples/plot_fmri_data_example.py``) - - 01:26.829 - - 3222.1 + - 01:21.342 + - 3181.3 * - :ref:`sphx_glr_auto_examples_plot_2D_simulation_example.py` (``../examples/plot_2D_simulation_example.py``) - - 01:06.937 - - 722.2 + - 01:06.067 + - 722.1 * - :ref:`sphx_glr_auto_examples_plot_dcrt_example.py` (``../examples/plot_dcrt_example.py``) - - 01:02.862 - - 657.4 + - 01:02.848 + - 657.8 * - :ref:`sphx_glr_auto_examples_plot_variable_importance_classif.py` (``../examples/plot_variable_importance_classif.py``) - - 00:44.470 + - 00:44.197 - 638.9 * - :ref:`sphx_glr_auto_examples_plot_diabetes_variable_importance_example.py` (``../examples/plot_diabetes_variable_importance_example.py``) - - 00:09.310 - - 642.8 + - 00:09.200 + - 640.5 diff --git a/docs/_static/basic.css b/docs/_static/basic.css index 7ebbd6d0..4738b2ed 100644 --- a/docs/_static/basic.css +++ b/docs/_static/basic.css @@ -741,14 +741,6 @@ abbr, acronym { cursor: help; } -.translated { - background-color: rgba(207, 255, 207, 0.2) -} - -.untranslated { - background-color: rgba(255, 207, 207, 0.2) -} - /* -- code displays --------------------------------------------------------- */ pre { diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js index 752cfb1d..8ca14a1d 100644 --- a/docs/_static/documentation_options.js +++ b/docs/_static/documentation_options.js @@ -1,5 +1,5 @@ const DOCUMENTATION_OPTIONS = { - VERSION: '0.1.dev1+g27d08d9', + VERSION: '0.1.dev1+g52d640d', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/docs/api.html b/docs/api.html index ee3f8619..cfcf8381 100644 --- a/docs/api.html +++ b/docs/api.html @@ -5,7 +5,7 @@ - API Documentation — HiDimStat 0.1.dev1+g27d08d9 documentation + API Documentation — HiDimStat 0.1.dev1+g52d640d documentation @@ -13,7 +13,7 @@ - + @@ -147,7 +147,7 @@

Functions

ensemble_clustered_inference(X_init, y, ...)

Ensemble clustered inference algorithm

-

group_reid(X, Y[, fit_Y, stationary, ...])

+

group_reid(X, Y[, stationary, method, ...])

Estimation of the covariance matrix using group Reid procedure

hd_inference(X, y, method[, n_jobs, memory, ...])

@@ -211,7 +211,7 @@

Classes

© Copyright 2024, Mind-Inria.
- Created using Sphinx 8.2.0.
+ Created using Sphinx 8.2.1.

diff --git a/docs/auto_examples/index.html b/docs/auto_examples/index.html index ba05070a..3e770ff9 100644 --- a/docs/auto_examples/index.html +++ b/docs/auto_examples/index.html @@ -5,7 +5,7 @@ - Examples Gallery — HiDimStat 0.1.dev1+g27d08d9 documentation + Examples Gallery — HiDimStat 0.1.dev1+g52d640d documentation @@ -13,7 +13,7 @@ - + @@ -154,7 +154,7 @@

© Copyright 2024, Mind-Inria.
- Created using Sphinx 8.2.0.
+ Created using Sphinx 8.2.1.

diff --git a/docs/auto_examples/plot_2D_simulation_example.html b/docs/auto_examples/plot_2D_simulation_example.html index 0978a406..e4a65ba8 100644 --- a/docs/auto_examples/plot_2D_simulation_example.html +++ b/docs/auto_examples/plot_2D_simulation_example.html @@ -5,7 +5,7 @@ - Support recovery on simulated data (2D) — HiDimStat 0.1.dev1+g27d08d9 documentation + Support recovery on simulated data (2D) — HiDimStat 0.1.dev1+g52d640d documentation @@ -13,7 +13,7 @@ - + @@ -475,7 +475,7 @@

Analysis of the results -

Total running time of the script: (1 minutes 6.937 seconds)

+

Total running time of the script: (1 minutes 6.067 seconds)

Estimated memory usage: 722 MB

 -Type-I Error, Power

Total running time of the script: (1 minutes 2.862 seconds)

-

Estimated memory usage: 657 MB

+Type-I Error, Power

Total running time of the script: (1 minutes 2.848 seconds)

+

Estimated memory usage: 658 MB

-

Total running time of the script: (1 minutes 26.829 seconds)

-

Estimated memory usage: 3222 MB

+

Total running time of the script: (1 minutes 21.342 seconds)

+

Estimated memory usage: 3181 MB

 -plot variable importance classif
[<matplotlib.axis.YTick object at 0x7f2bdbe04680>, <matplotlib.axis.YTick object at 0x7f2bdbe05bb0>, <matplotlib.axis.YTick object at 0x7f2bdc59c2c0>, <matplotlib.axis.YTick object at 0x7f2bdc59e2a0>, <matplotlib.axis.YTick object at 0x7f2cb3f9faa0>, <matplotlib.axis.YTick object at 0x7f2bdc59fe90>, <matplotlib.axis.YTick object at 0x7f2bdc59c140>, <matplotlib.axis.YTick object at 0x7f2cb2ab6e70>, <matplotlib.axis.YTick object at 0x7f2cb2ab5100>, <matplotlib.axis.YTick object at 0x7f2bdc59d2b0>]
+plot variable importance classif
[<matplotlib.axis.YTick object at 0x7f0fe25f0e00>, <matplotlib.axis.YTick object at 0x7f0fe25f2630>, <matplotlib.axis.YTick object at 0x7f0fe3d736b0>, <matplotlib.axis.YTick object at 0x7f0fe3d70e00>, <matplotlib.axis.YTick object at 0x7f0fe3d484d0>, <matplotlib.axis.YTick object at 0x7f0fe3d71580>, <matplotlib.axis.YTick object at 0x7f0fe3d705c0>, <matplotlib.axis.YTick object at 0x7f0fe3d73ce0>, <matplotlib.axis.YTick object at 0x7f0fe331e840>, <matplotlib.axis.YTick object at 0x7f0fe3d72240>]
 

 

 
@@ -439,10 +439,10 @@ 
Visualize the variable importanceax.legend(handles=handles + [important_legend, ground_truth_legend], loc="upper right")
-plot variable importance classif
<matplotlib.legend.Legend object at 0x7f2bd3f187d0>
+plot variable importance classif
<matplotlib.legend.Legend object at 0x7f0fe1ee86b0>
 

 

-
Total running time of the script: (0 minutes 44.470 seconds)

+
Total running time of the script: (0 minutes 44.197 seconds)

 
Estimated memory usage:  639 MB