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nf_research_tools.rdb.model.jsonld
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{
"@context": {
"bts": "http://schema.biothings.io/",
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"schema": "http://schema.org/",
"xsd": "http://www.w3.org/2001/XMLSchema#"
},
"@graph": [
{
"@id": "bts:Component",
"@type": "rdfs:Class",
"rdfs:comment": "Type of submitted information.",
"rdfs:label": "Component",
"rdfs:subClassOf": [
{
"@id": "bts:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Component",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:Resource",
"@type": "rdfs:Class",
"rdfs:comment": "A tool used in the research process (i.e. animal model, cell line, etc.)",
"rdfs:label": "Resource",
"rdfs:subClassOf": [
{
"@id": "bts:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "resource",
"sms:required": "sms:false",
"sms:requiresComponent": [
{
"@id": "bts:GeneticReagent"
},
{
"@id": "bts:Antibody"
},
{
"@id": "bts:CellLine"
},
{
"@id": "bts:AnimalModel"
}
],
"sms:requiresDependency": [
{
"@id": "bts:Component"
},
{
"@id": "bts:resourceId"
},
{
"@id": "bts:geneticReagentId"
},
{
"@id": "bts:antibodyId"
},
{
"@id": "bts:cellLineId"
},
{
"@id": "bts:animalModelId"
},
{
"@id": "bts:rrid"
},
{
"@id": "bts:resourceName"
},
{
"@id": "bts:synonyms"
},
{
"@id": "bts:resourceType"
},
{
"@id": "bts:description"
},
{
"@id": "bts:usageRequirements"
},
{
"@id": "bts:howToAcquire"
},
{
"@id": "bts:dateAdded"
},
{
"@id": "bts:dateModified"
}
],
"sms:validationRules": []
},
{
"@id": "bts:resourceId",
"@type": "rdf:Property",
"rdfs:comment": "A unique identifier for the resource.",
"rdfs:label": "resourceId",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
},
{
"@id": "bts:VendorItem"
},
{
"@id": "bts:Biobank"
},
{
"@id": "bts:Observation"
},
{
"@id": "bts:ResourceApplication"
},
{
"@id": "bts:Development"
},
{
"@id": "bts:Usage"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "resourceId",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:geneticReagentId",
"@type": "rdf:Property",
"rdfs:comment": "A unique identifier for the reagent.",
"rdfs:label": "geneticReagentId",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
},
{
"@id": "bts:GeneticReagent"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "geneticReagentId",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:antibodyId",
"@type": "rdf:Property",
"rdfs:comment": "A unique identifier for the antibody.",
"rdfs:label": "antibodyId",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "antibodyId",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:cellLineId",
"@type": "rdf:Property",
"rdfs:comment": "A unique identifier for the cell line.",
"rdfs:label": "cellLineId",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
},
{
"@id": "bts:CellLine"
},
{
"@id": "bts:Mutation"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "cellLineId",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:animalModelId",
"@type": "rdf:Property",
"rdfs:comment": "A unique identifier for the animal model.",
"rdfs:label": "animalModelId",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
},
{
"@id": "bts:Mutation"
},
{
"@id": "bts:AnimalModel"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "animalModelId",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:rrid",
"@type": "rdf:Property",
"rdfs:comment": "The RRID, a standard resource identifier that will facilitate interoperability with other databases, and is an increasingly-used identifier for publications https://scicrunch.org/resources if available",
"rdfs:label": "rrid",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "rrid",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:resourceName",
"@type": "rdf:Property",
"rdfs:comment": "The “canonical” name of the resource",
"rdfs:label": "resourceName",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "resourceName",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:synonyms",
"@type": "rdf:Property",
"rdfs:comment": "Synonyms of the resource",
"rdfs:label": "synonyms",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "synonyms",
"sms:required": "sms:false",
"sms:validationRules": [
"list"
]
},
{
"@id": "bts:resourceType",
"@type": "rdf:Property",
"rdfs:comment": "Type of resource. (e.g. animal model, antibody, plasmid, etc.)",
"rdfs:label": "resourceType",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"schema:rangeIncludes": [
{
"@id": "bts:AnimalModel"
},
{
"@id": "bts:CellLine"
},
{
"@id": "bts:Antibody"
},
{
"@id": "bts:GeneticReagent"
},
{
"@id": "bts:Biobank"
}
],
"sms:displayName": "resourceType",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:description",
"@type": "rdf:Property",
"rdfs:comment": "Free text description/summary/overview/purpose of the resource.",
"rdfs:label": "description",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "description",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:usageRequirements",
"@type": "rdf:Property",
"rdfs:comment": "Any known restrictions on use of the resource.",
"rdfs:label": "usageRequirements",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"schema:rangeIncludes": [
{
"@id": "bts:Non-commercialuseonly"
},
{
"@id": "bts:Re-distributionnotpermitted"
},
{
"@id": "bts:Generationofgermlinetransmittingchimerasnotpermitted"
},
{
"@id": "bts:Creationoffunctionalgametesnotpermitted"
},
{
"@id": "bts:Generationofinterspecieschimerasnotpermitted"
},
{
"@id": "bts:Humancloningnotpermitted"
},
{
"@id": "bts:Cannotbeusedfortreatmentpurposes"
},
{
"@id": "bts:IRBdocumentationrequired"
},
{
"@id": "bts:Speciallicencingrestrictions(seevendorformoreinformation)"
},
{
"@id": "bts:Unknown"
}
],
"sms:displayName": "usageRequirements",
"sms:required": "sms:false",
"sms:validationRules": [
"list"
]
},
{
"@id": "bts:howToAcquire",
"@type": "rdf:Property",
"rdfs:comment": "How to acquire a particular resource.",
"rdfs:label": "howToAcquire",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "howToAcquire",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:dateAdded",
"@type": "rdf:Property",
"rdfs:comment": "The date that the resource was originally added.",
"rdfs:label": "dateAdded",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "dateAdded",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:dateModified",
"@type": "rdf:Property",
"rdfs:comment": "The last update of the resource metadata (not including observations).",
"rdfs:label": "dateModified",
"schema:domainIncludes": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "dateModified",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:GeneticReagent",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "GeneticReagent",
"rdfs:subClassOf": [
{
"@id": "bts:resourceType"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Genetic Reagent",
"sms:required": "sms:false",
"sms:requiresDependency": [
{
"@id": "bts:Component"
},
{
"@id": "bts:geneticReagentId"
},
{
"@id": "bts:insertName"
},
{
"@id": "bts:insertEntrezId"
},
{
"@id": "bts:gRNAshRNASequence"
},
{
"@id": "bts:insertSize"
},
{
"@id": "bts:insertSpecies"
},
{
"@id": "bts:nTerminalTag"
},
{
"@id": "bts:cTerminalTag"
},
{
"@id": "bts:cloningMethod"
},
{
"@id": "bts:5primeCloningSite"
},
{
"@id": "bts:5primeSiteDestroyed"
},
{
"@id": "bts:3primeCloningSite"
},
{
"@id": "bts:3primeSiteDestroyed"
},
{
"@id": "bts:promoter"
},
{
"@id": "bts:5primer"
},
{
"@id": "bts:3primer"
},
{
"@id": "bts:vectorBackbone"
},
{
"@id": "bts:vectorType"
},
{
"@id": "bts:backboneSize"
},
{
"@id": "bts:totalSize"
},
{
"@id": "bts:bacterialResistance"
},
{
"@id": "bts:selectableMarker"
},
{
"@id": "bts:copyNumber"
},
{
"@id": "bts:growthTemp"
},
{
"@id": "bts:growthStrain"
},
{
"@id": "bts:hazardous"
}
],
"sms:validationRules": []
},
{
"@id": "bts:Antibody",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Antibody",
"rdfs:subClassOf": [
{
"@id": "bts:resourceType"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Antibody",
"sms:required": "sms:false",
"sms:requiresDependency": [
{
"@id": "bts:Component"
},
{
"@id": "bts:antibodyId"
},
{
"@id": "bts:uniprotId"
},
{
"@id": "bts:targetAntigen"
},
{
"@id": "bts:clonality"
},
{
"@id": "bts:cloneId"
},
{
"@id": "bts:reactiveSpecies"
},
{
"@id": "bts:conjugate"
},
{
"@id": "bts:hostOrganism"
}
],
"sms:validationRules": []
},
{
"@id": "bts:CellLine",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "CellLine",
"rdfs:subClassOf": [
{
"@id": "bts:resourceType"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Cell Line",
"sms:required": "sms:false",
"sms:requiresComponent": [
{
"@id": "bts:Donor"
}
],
"sms:requiresDependency": [
{
"@id": "bts:Component"
},
{
"@id": "bts:cellLineId"
},
{
"@id": "bts:donorId"
},
{
"@id": "bts:organ"
},
{
"@id": "bts:tissue"
},
{
"@id": "bts:cellLineCategory"
},
{
"@id": "bts:originYear"
},
{
"@id": "bts:strProfile"
},
{
"@id": "bts:populationDoublingTime"
},
{
"@id": "bts:resistance"
},
{
"@id": "bts:contaminatedMisidentified"
},
{
"@id": "bts:cellLineGeneticDisorder"
},
{
"@id": "bts:cellLineManifestation"
}
],
"sms:validationRules": []
},
{
"@id": "bts:AnimalModel",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "AnimalModel",
"rdfs:subClassOf": [
{
"@id": "bts:resourceType"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Animal Model",
"sms:required": "sms:false",
"sms:requiresComponent": [
{
"@id": "bts:Donor"
}
],
"sms:requiresDependency": [
{
"@id": "bts:Component"
},
{
"@id": "bts:animalModelId"
},
{
"@id": "bts:donorId"
},
{
"@id": "bts:transplantationDonorId"
},
{
"@id": "bts:animalState"
},
{
"@id": "bts:backgroundStrain"
},
{
"@id": "bts:backgroundSubstrain"
},
{
"@id": "bts:strainNomenclature"
},
{
"@id": "bts:generation"
},
{
"@id": "bts:transplantationType"
},
{
"@id": "bts:animalModelGeneticDisorder"
},
{
"@id": "bts:animalModelOfManifestation"
}
],
"sms:validationRules": []
},
{
"@id": "bts:Biobank",
"@type": "rdfs:Class",
"rdfs:comment": "A large collection of biological or medical data and tissue samples, amassed for research purposes.",
"rdfs:label": "Biobank",
"rdfs:subClassOf": [
{
"@id": "bts:resourceType"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "biobank",
"sms:required": "sms:false",
"sms:requiresComponent": [
{
"@id": "bts:Resource"
}
],
"sms:requiresDependency": [
{
"@id": "bts:Component"
},
{
"@id": "bts:biobankId"
},
{
"@id": "bts:resourceId"
},
{
"@id": "bts:biobankName"
},
{
"@id": "bts:biobankURL"
},
{
"@id": "bts:specimenType"
},
{
"@id": "bts:specimenTissueType"
},
{
"@id": "bts:tumorType"
},
{
"@id": "bts:diseaseType"
},
{
"@id": "bts:specimenPreparationMethod"
},
{
"@id": "bts:specimenFormat"
}
],
"sms:validationRules": []
},
{
"@id": "bts:Non-commercialuseonly",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Non-commercialuseonly",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "non-commercial use only",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Re-distributionnotpermitted",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Re-distributionnotpermitted",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "re-distribution not permitted",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Generationofgermlinetransmittingchimerasnotpermitted",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Generationofgermlinetransmittingchimerasnotpermitted",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "generation of germ line transmitting chimeras not permitted",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Creationoffunctionalgametesnotpermitted",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Creationoffunctionalgametesnotpermitted",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "creation of functional gametes not permitted",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Generationofinterspecieschimerasnotpermitted",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Generationofinterspecieschimerasnotpermitted",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "generation of interspecies chimeras not permitted",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Humancloningnotpermitted",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Humancloningnotpermitted",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "human cloning not permitted",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Cannotbeusedfortreatmentpurposes",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Cannotbeusedfortreatmentpurposes",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "cannot be used for treatment purposes",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:IRBdocumentationrequired",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "IRBdocumentationrequired",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "IRB documentation required",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Speciallicencingrestrictions(seevendorformoreinformation)",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Speciallicencingrestrictions(seevendorformoreinformation)",
"rdfs:subClassOf": [
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "special licencing restrictions (see vendor for more information)",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Unknown",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Unknown",
"rdfs:subClassOf": [
{
"@id": "bts:clonality"
},
{
"@id": "bts:5primeSiteDestroyed"
},
{
"@id": "bts:3primeSiteDestroyed"
},
{
"@id": "bts:copyNumber"
},
{
"@id": "bts:hazardous"
},
{
"@id": "bts:sex"
},
{
"@id": "bts:cloningMethod"
},
{
"@id": "bts:usageRequirements"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Unknown",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:insertName",
"@type": "rdf:Property",
"rdfs:comment": "Name of the main gene insert in the plasmid.",
"rdfs:label": "insertName",
"schema:domainIncludes": [
{
"@id": "bts:GeneticReagent"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "insertName",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:insertEntrezId",
"@type": "rdf:Property",
"rdfs:comment": "The entrez gene id for the gene insert",
"rdfs:label": "insertEntrezId",
"schema:domainIncludes": [
{
"@id": "bts:GeneticReagent"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "insertEntrezId",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:gRNAshRNASequence",
"@type": "rdf:Property",
"rdfs:comment": "The sequence of the gRNA or shRNA for the gene insert, if present.",
"rdfs:label": "gRNAshRNASequence",
"schema:domainIncludes": [
{
"@id": "bts:GeneticReagent"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "gRNAshRNASequence",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:insertSize",
"@type": "rdf:Property",
"rdfs:comment": "Size, in bp, of the gene insert as it is in the plasmid.",