diff --git a/README.md b/README.md index ec003a0fb..9f7d55152 100644 --- a/README.md +++ b/README.md @@ -70,6 +70,7 @@ Mastodon Deep Lineage is an extension of Mastodon. For the full documentation of |--------------------------------------|----------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------| | Branch N Leaves | _idem_ | The total number of leaves of a branch spot in the whole track subtree of this branch spot.

Example visualization: ![branchNLeavesAnimation.gif](doc/features/branch/branchNLeavesAnimation.gif) | ![](doc/features/branch/branchNLeaves.png) | | Branch N Successors and Predecessors | _idem_ | Total number of successors and predecessors of a branch spot in the whole track subtree of this branch spot.

Example visualization:
Successors (encodes reproductivity) ![branchNSuccessorsAnimation.gif](doc/features/branch/branchNSuccessorsAnimation.gif)
Predecessors (encodes generation) ![branchNPredecessorsAnimation.gif](doc/features/branch/branchNPredecessorsAnimation.gif) | ![](doc/features/branch/branchNSuccessorsPredecessors.png) | +| Branch Start and End Timepoints | _idem_ | The first timepoint and the last timepoint of a branch spot.

Example visualization:
First timepoint ![branchFirstTimepoint.gif](doc/features/branch/branchFirstTimepoint.gif)
Last timepoint ![branchLastTimepoint.gif](doc/features/branch/branchLastTimepoint.gif) | ![](doc/features/branch/branchNSuccessorsPredecessors.png) | | Branch Sinuosity | _idem_ | The sinuosity of a spot during its life span (cf. [Sinuosity](https://en.wikipedia.org/wiki/Sinuosity)), i.e. how much the track represented by the branch is curved. Values close to 1: almost straight movement. Values significantly higher than 1: winding or meandering movement. Positive infinity (∞), if the spot is at the end at the same position as at the beginning, but has moved in between.

Example visualization: ![branchSinuosityAnimation.gif](doc/features/branch/branchSinuosityAnimation.gif) | ![](doc/features/branch/branchSinuosityEquation.gif) | | Branch Average Movement | _idem_ | The average movement per frame of a spot during its life span. Example visualization: ![branchAverageMovementAnimation.gif](doc/features/branch/branchAverageMovementAnimation.gif) | ![](doc/features/branch/branchAverageMovementEquation.gif)

e.g.:

![](doc/features/branch/branchAverageMovement.png) | | Branch Movement Direction | _idem_ | The movement direction of a branch spot represented as a normalized directional vector pointing from the start (spot) position to the end (spot) position of the BranchSpot.

Example visualizations:
x-component ![branchMovementDirectionXAnimation.gif](doc/features/branch/branchMovementDirectionXAnimation.gif)
y-component ![branchMovementDirectionYAnimation.gif](doc/features/branch/branchMovementDirectionYAnimation.gif)
z-component ![branchMovementDirectionZAnimation.gif](doc/features/branch/branchMovementDirectionZAnimation.gif) | ![](doc/features/branch/branchMovementDirectionEquation.gif) | diff --git a/doc/features/branch/branchFirstTimepoint.gif b/doc/features/branch/branchFirstTimepoint.gif new file mode 100644 index 000000000..dc574d08d Binary files /dev/null and b/doc/features/branch/branchFirstTimepoint.gif differ diff --git a/doc/features/branch/branchLastTimepoint.gif b/doc/features/branch/branchLastTimepoint.gif new file mode 100644 index 000000000..90ad0cf09 Binary files /dev/null and b/doc/features/branch/branchLastTimepoint.gif differ