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From delta file to agp and to fasta file of scaffolded assembly? #167

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hrpelg opened this issue Aug 27, 2023 · 0 comments
Open

From delta file to agp and to fasta file of scaffolded assembly? #167

hrpelg opened this issue Aug 27, 2023 · 0 comments

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@hrpelg
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hrpelg commented Aug 27, 2023

Hi,

I got a delta file of my querry assembly agaisnt a ref genome and the correspoding ncumer coords file too. Is there a way to transform that to agp and then use the agp file to get a fasta file of the construction of pseudomolecules/scaffolding file?

I see you got a tool for agp2fasta, but how I transform my delta to agp format first?

Cheers

E

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