ProjectCells.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/pseudotime.R
\name{ProjectCells}
\alias{ProjectCells}
\title{Project cells from one Seurat object onto the pseudotime axis (or any other continuous variable) from another Seurat object.}
\usage{
ProjectCells(dge_train, dge_test, genes.use = dge_train@var.genes,
  regressout = dge_train@calc.params$ScaleData$vars.to.regress,
  to_project, k = 25, pc.use = 1:25, test_mode = F)
}
\arguments{
\item{dge_train}{Seurat object with 'pseudotime' field included.}

\item{dge_test}{Seurat object. Cells will be assigned a pseudotime value based on `dge_train`.}

\item{genes.use}{Defaults to `dge_train@var.genes`. If you use method="PCA", use the same genes here.
If you aren't sure, use method="KNN".}

\item{regressout}{Please put whatever you used for 'latent.vars' in RegressOut when you processed 'dge_train'.}

\item{to_project}{Character vector such that FetchData( dge_train, to_project) contains numeric columns.
Try "pseudotime" or c("tSNE_1", "tSNE_2").}

\item{k}{Number of nearest neighbors to use.}

\item{pc.use}{which principal components to use for nearest neighbor search.}
}
\description{
Project cells from one Seurat object onto the pseudotime axis (or any other continuous variable) from another Seurat object.
}