CellMatch is an R package for transparent staging of stem cell derivatives.
To install from github:
install.packages("devtools") #if you don't have devtools already
devtools::install_github("maehrlab/cellmatch", build_vignettes = TRUE)
For demonstrations of the package:
browseVignettes("cellmatch")
One of the vignettes reproduces our staging of stem-cell derived pharyngeal foregut endoderm using an embryonic endodermal time-course. The other is a pancreas demo. It shows more of what CellMatch does under the hood, and it includes utility functions for gene-name conversion.