From fa7602aa89effcea51c68645bf0619a5b94fcd15 Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Fri, 11 Oct 2024 11:25:44 -0700 Subject: [PATCH 1/4] refresh contexts based on GO changes upstream --- src/prefixmaps/data/go.csv | 3 ++ src/prefixmaps/data/merged.csv | 44 ++++++++++++++++--- src/prefixmaps/data/merged.monarch.csv | 44 ++++++++++++++++--- src/prefixmaps/data/merged.oak.csv | 44 ++++++++++++++++--- src/prefixmaps/data/prefixcc.csv | 61 ++++++++++++++++++++++---- src/prefixmaps/data/w3id.csv | 60 ++++++++++++++++++++++++- 6 files changed, 226 insertions(+), 30 deletions(-) diff --git a/src/prefixmaps/data/go.csv b/src/prefixmaps/data/go.csv index dd4e549..8cc3628 100644 --- a/src/prefixmaps/data/go.csv +++ b/src/prefixmaps/data/go.csv @@ -20,6 +20,7 @@ go,FMA,http://purl.obolibrary.org/obo/FMA_,canonical go,FYPO,http://purl.obolibrary.org/obo/FYPO_,canonical go,GeneDB,http://identifiers.org/genedb/,canonical go,GO,http://purl.obolibrary.org/obo/GO_,canonical +go,GO_REF,http://purl.obolibrary.org/obo/go/references/,canonical go,gomodel,http://model.geneontology.org/,canonical go,GR_GENE,http://identifiers.org/gramene.gene/,canonical go,GR_PROTEIN,http://identifiers.org/gramene.protein/,canonical @@ -39,6 +40,7 @@ go,NCBITaxon,http://purl.obolibrary.org/obo/NCBITaxon_,canonical go,PANTHER,http://identifiers.org/panther.family/,canonical go,PATO,http://purl.obolibrary.org/obo/PATO_,canonical go,PlasmoDB,http://identifiers.org/plasmodb/,canonical +go,PMID,http://identifiers.org/pubmed/,canonical go,PO,http://purl.obolibrary.org/obo/PO_,canonical go,PomBase,http://identifiers.org/pombase/,canonical go,PR,http://purl.obolibrary.org/obo/PR_,canonical @@ -50,6 +52,7 @@ go,SGN,http://identifiers.org/sgn/,canonical go,SO,http://purl.obolibrary.org/obo/SO_,canonical go,TAIR,http://identifiers.org/tair.locus/,canonical go,TGD,http://identifiers.org/tgd/,canonical +go,TreeGrafter,http://identifiers.org/panther.family/,namespace_alias go,TriTrypDB,http://identifiers.org/tritrypdb/,canonical go,UBERON,http://purl.obolibrary.org/obo/UBERON_,canonical go,UniProtKB,http://identifiers.org/uniprot/,canonical diff --git a/src/prefixmaps/data/merged.csv b/src/prefixmaps/data/merged.csv index fdbb3a7..3434505 100644 --- a/src/prefixmaps/data/merged.csv +++ b/src/prefixmaps/data/merged.csv @@ -185,6 +185,7 @@ merged,AfPO,http://bioregistry.io/AfPO:,prefix_alias,bioregistry merged,AfPO,https://bioregistry.io/AfPO:,prefix_alias,bioregistry merged,AfPO,https://purl.obolibrary.org/obo/AfPO_,prefix_alias,bioregistry merged,afr,http://purl.allotrope.org/ontologies/result#,canonical,prefixcc +merged,after,http://rds.posccaesar.org/ontology/plm/ds/,canonical,prefixcc merged,AFTOL.TAXONOMY,http://identifiers.org/aftol.taxonomy/,canonical,bioregistry merged,AFTOL.TAXONOMY,http://bioregistry.io/aftol.taxonomy:,prefix_alias,bioregistry merged,AFTOL.TAXONOMY,http://identifiers.org/aftol.taxonomy:,prefix_alias,bioregistry @@ -251,7 +252,9 @@ merged,AIO,https://w3id.org/aio/,canonical,bioregistry merged,AIO,http://bioregistry.io/aio:,prefix_alias,bioregistry merged,AIO,http://w3id.org/aio/,prefix_alias,bioregistry merged,AIO,https://bioregistry.io/aio:,prefix_alias,bioregistry +merged,aio,https://paul.ti.rw.fau.de/~jo00defe/SemWoT/aio#,prefix_alias,prefixcc merged,air,http://dig.csail.mit.edu/TAMI/2007/amord/air#,canonical,prefixcc +merged,airo,https://w3id.org/airo#,canonical,prefixcc merged,airport,http://www.daml.org/2001/10/html/airport-ont#,canonical,prefixcc merged,airs,https://raw.githubusercontent.com/airs-linked-data/lov/latest/src/airs_vocabulary.ttl#,canonical,prefixcc merged,AISM,http://purl.obolibrary.org/obo/AISM_,canonical,obo @@ -319,6 +322,7 @@ merged,AMPHX,https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://purl.ob merged,ams,http://data.amadeus.com/,canonical,prefixcc merged,amsl,http://vocab.ub.uni-leipzig.de/amsl/,canonical,prefixcc merged,amt,http://academic-meta-tool.xyz/vocab#,canonical,prefixcc +merged,amv,https://w3id.org/amv/,canonical,prefixcc merged,anca,http://users.utcluj.ro/~raluca/rdf_ontologies_ralu/ralu_modified_ontology_pizzas2_0#,canonical,prefixcc merged,aneo,http://akonadi-project.org/ontologies/aneo#,canonical,prefixcc merged,ann,http://www.w3.org/2000/10/annotation-ns#,canonical,prefixcc @@ -422,6 +426,7 @@ merged,api,http://purl.org/linked-data/api/vocab#,canonical,prefixcc merged,APID.INTERACTIONS,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged,APIDB_PLASMODB,http://identifiers.org/plasmodb/,namespace_alias,bioregistry merged,apivc,http://purl.org/linked-data/api/vocab#,namespace_alias,prefixcc +merged,apmwg,http://apmwg.ovh/,canonical,prefixcc merged,APO,http://purl.obolibrary.org/obo/APO_,canonical,obo merged,APO,http://bioregistry.io/APO:,prefix_alias,bioregistry merged,APO,http://www.ebi.ac.uk/ols/ontologies/apo/terms?iri=http://purl.obolibrary.org/obo/APO_,prefix_alias,bioregistry @@ -1135,6 +1140,7 @@ merged,BIOMINDER,https://datalab.rwth-aachen.de/MINDER/resource/,prefix_alias,bi merged,BIOMINDER,https://identifiers.org/biominder/,prefix_alias,bioregistry merged,BIOMINDER,https://identifiers.org/biominder:,prefix_alias,bioregistry merged,BIOMINDER,https://n2t.net/biominder:,prefix_alias,bioregistry +merged,biomodels,http://purl.obolibrary.org/obo/KISAO_,namespace_alias,prefixcc merged,BIOMODELS.DB,http://identifiers.org/biomodels.db/,canonical,bioregistry merged,BIOMODELS.DB,http://bio2rdf.org/biomodels:,prefix_alias,bioregistry merged,BIOMODELS.DB,http://biomodels.caltech.edu/,prefix_alias,bioregistry @@ -1422,6 +1428,7 @@ merged,bn,http://babelnet.org/rdf/,canonical,prefixcc merged,bne,http://datos.bne.es/resource/,canonical,prefixcc merged,bner,http://datos.bne.es/resource/,namespace_alias,prefixcc merged,bnf,http://www.w3.org/2000/10/swap/grammar/bnf#,canonical,prefixcc +merged,bng,https://w3id.org/dob/voc/epsg-27700#,canonical,prefixcc merged,bob,http://good.dad/meaning/bob#,canonical,prefixcc merged,BOLD.TAXONOMY,http://identifiers.org/bold.taxonomy/,canonical,bioregistry merged,BOLD.TAXONOMY,http://bio2rdf.org/bold:,prefix_alias,bioregistry @@ -2406,6 +2413,7 @@ merged,CMPO,http://www.ebi.ac.uk/cmpo/CMPO_,canonical,bioregistry merged,CMPO,http://bioregistry.io/cmpo:,prefix_alias,bioregistry merged,CMPO,https://bioregistry.io/cmpo:,prefix_alias,bioregistry merged,CMPO,https://www.ebi.ac.uk/cmpo/CMPO_,prefix_alias,bioregistry +merged,cmso,http://purls.helmholtz-metadaten.de/cmso/,canonical,prefixcc merged,cnt,http://www.w3.org/2011/content#,canonical,prefixcc merged,co,http://purl.org/ontology/co/core#,canonical,prefixcc merged,CO_320,https://cropontology.org/rdf/CO_320:,canonical,bioregistry @@ -2812,6 +2820,7 @@ merged,CPT,http://www.aapc.com/codes/cpt-codes/,prefix_alias,bioregistry merged,CPT,https://bioregistry.io/ama-cpt:,prefix_alias,bioregistry merged,CPT,https://bioregistry.io/cpt:,prefix_alias,bioregistry merged,cpv,http://purl.org/weso/cpv/,canonical,prefixcc +merged,cr,http://mlcommons.org/croissant/,canonical,prefixcc merged,CRAN,https://cran.r-project.org/web/packages/,canonical,bioregistry merged,CRAN,http://CRAN.R-project.org/package=,prefix_alias,bioregistry merged,CRAN,http://bioregistry.io/cran:,prefix_alias,bioregistry @@ -2842,9 +2851,10 @@ merged,CRISPRDB,https://n2t.net/crisprdb:,prefix_alias,bioregistry merged,crm,http://www.cidoc-crm.org/cidoc-crm/,canonical,prefixcc merged,crmdig,http://www.ics.forth.gr/isl/CRMdig/,canonical,prefixcc merged,crmeh,http://purl.org/crmeh#,canonical,prefixcc +merged,crmgeo,http://www.ics.forth.gr/isl/CRMgeo/,canonical,prefixcc merged,crminf,http://www.cidoc-crm.org/cidoc-crm/CRMinf/,canonical,prefixcc merged,crml,http://semweb.mmlab.be/ns/rml/condition#,canonical,prefixcc -merged,crmsci,http://cidoc-crm.org/crmsci/,canonical,prefixcc +merged,crmsci,http://www.cidoc-crm.org/extensions/crmsci/,canonical,prefixcc merged,CRO,http://purl.obolibrary.org/obo/CRO_,canonical,obo merged,CRO,http://bioregistry.io/CRO:,prefix_alias,bioregistry merged,CRO,http://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_,prefix_alias,bioregistry @@ -3542,6 +3552,7 @@ merged,DID,https://identifiers.org/DID:,prefix_alias,bioregistry merged,DID,https://identifiers.org/did/did:,prefix_alias,bioregistry merged,DID,https://n2t.net/did:,prefix_alias,bioregistry merged,DID,https://uniresolver.io/#did:,prefix_alias,bioregistry +merged,did,https://w3id.org/dob/id/,prefix_alias,prefixcc merged,DIDEO,http://purl.obolibrary.org/obo/DIDEO_,canonical,obo merged,DIDEO,http://bioregistry.io/DIDEO:,prefix_alias,bioregistry merged,DIDEO,http://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_,prefix_alias,bioregistry @@ -3648,6 +3659,7 @@ merged,doap,http://bioregistry.io/doap:,prefix_alias,bioregistry merged,doap,https://bioregistry.io/doap:,prefix_alias,bioregistry merged,doap,https://usefulinc.com/ns/doap#,prefix_alias,bioregistry merged,doas,http://deductions.github.io/doas.owl.ttl#,canonical,prefixcc +merged,dob,https://w3id.org/dob/voc#,canonical,prefixcc merged,doc,http://www.w3.org/2000/10/swap/pim/doc#,canonical,prefixcc merged,docam,https://www.docam.ca/glossaurus/,canonical,prefixcc merged,docbook,http://docbook.org/ns/docbook/,canonical,prefixcc @@ -3732,6 +3744,7 @@ merged,DOOR,https://identifiers.org/door/,prefix_alias,bioregistry merged,DOOR,https://identifiers.org/door:,prefix_alias,bioregistry merged,DOOR,https://n2t.net/door:,prefix_alias,bioregistry merged,door,http://kannel.open.ac.uk/ontology#,prefix_alias,prefixcc +merged,dop,https://w3id.org/dob/voc/prop#,canonical,prefixcc merged,DOQCS.MODEL,http://identifiers.org/doqcs.model/,canonical,bioregistry merged,DOQCS.MODEL,http://bio2rdf.org/doqcs.model:,prefix_alias,bioregistry merged,DOQCS.MODEL,http://bioregistry.io/doqcs.model:,prefix_alias,bioregistry @@ -4156,6 +4169,7 @@ merged,ecoll,http://purl.org/ceu/eco/1.0#,canonical,prefixcc merged,ecore,http://www.eclipse.org/emf/2002/Ecore#,canonical,prefixcc merged,ecos,http://purl.org/ecos#,canonical,prefixcc merged,ecowlim,http://ecowlim.tfri.gov.tw/lode/resource/,canonical,prefixcc +merged,ecp,http://www.ebu.ch/metadata/ontologies/ebucoreplus#,canonical,prefixcc merged,ecpo,http://purl.org/ontology/ecpo#,canonical,prefixcc merged,ecrm,http://erlangen-crm.org/current/,canonical,prefixcc merged,ecs,http://rdf.ecs.soton.ac.uk/ontology/ecs#,canonical,prefixcc @@ -4250,6 +4264,7 @@ merged,edgarcik,http://edgarwrap.ontologycentral.com/cik/,canonical,prefixcc merged,edm,http://www.europeana.eu/schemas/edm/,canonical,prefixcc merged,edo,http://semanticweb.org/edo#,canonical,prefixcc merged,edr,https://w3id.org/laas-iot/edr#,canonical,prefixcc +merged,edtf,http://id.loc.gov/datatypes/EDTFScheme/,canonical,prefixcc merged,edu,https://schema.edu.ee/,canonical,prefixcc merged,edupro,http://ns.inria.fr/semed/eduprogression#,canonical,prefixcc merged,eem,http://purl.org/eem#,canonical,prefixcc @@ -5598,7 +5613,7 @@ merged,GIARDIADB,https://giardiadb.org/giardiadb/showRecord.do?name=GeneRecordCl merged,GIARDIADB,https://identifiers.org/giardiadb/,prefix_alias,bioregistry merged,GIARDIADB,https://identifiers.org/giardiadb:,prefix_alias,bioregistry merged,GIARDIADB,https://n2t.net/giardiadb:,prefix_alias,bioregistry -merged,gist,https://ontologies.semanticarts.com/o/gistCore#,canonical,prefixcc +merged,gist,http://ontologies.semanticarts.com/gist#,canonical,prefixcc merged,GITHUB,http://identifiers.org/github/,canonical,bioregistry merged,GITHUB,http://bioregistry.io/github:,prefix_alias,bioregistry merged,GITHUB,http://github.com/,prefix_alias,bioregistry @@ -5881,6 +5896,7 @@ merged,GO.RESOURCE,https://bioregistry.io/metaregistry/go/,canonical,bioregistry merged,GO.RESOURCE,http://bioregistry.io/go.resource:,prefix_alias,bioregistry merged,GO.RESOURCE,http://bioregistry.io/metaregistry/go/,prefix_alias,bioregistry merged,GO.RESOURCE,https://bioregistry.io/go.resource:,prefix_alias,bioregistry +merged,GO_REF,http://purl.obolibrary.org/obo/go/references/,canonical,go merged,GOA,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged,goaf,http://goaf.fr/goaf#,canonical,prefixcc merged,goavoc,http://bio2rdf.org/goa_vocabulary:,canonical,prefixcc @@ -6138,7 +6154,7 @@ merged,GRSDB,https://bioregistry.io/grsdb:,prefix_alias,bioregistry merged,GRSDB,https://identifiers.org/grsdb/,prefix_alias,bioregistry merged,GRSDB,https://identifiers.org/grsdb:,prefix_alias,bioregistry merged,GRSDB,https://n2t.net/grsdb:,prefix_alias,bioregistry -merged,gs1,http://gs1.org/voc/,canonical,prefixcc +merged,gs1,https://ref.gs1.org/voc/,canonical,prefixcc merged,gso,http://www.w3.org/2006/gen/ont#,canonical,prefixcc merged,gsp,http://www.opengis.net/ont/geosparql#,namespace_alias,prefixcc merged,GSSO,http://purl.obolibrary.org/obo/GSSO_,canonical,obo @@ -7885,6 +7901,7 @@ merged,kpd,http://purl.org/kpd/,canonical,prefixcc merged,ksam,http://kulturarvsdata.se/ksamsok#,namespace_alias,prefixcc merged,ksamsok,http://kulturarvsdata.se/ksamsok#,namespace_alias,prefixcc merged,kupkb,http://www.e-lico.eu/data/kupkb/,canonical,prefixcc +merged,kvasir,https://kvasir.discover.ilabt.imec.be/vocab#,canonical,prefixcc merged,kw,http://kwantu.net/kw/,canonical,prefixcc merged,kwijibo,http://kwijibo.talis.com/,canonical,prefixcc merged,l2sp,http://www.linked2safety-project.eu/properties/,canonical,prefixcc @@ -8130,6 +8147,7 @@ merged,linkml,http://w3id.org/linkml/,prefix_alias,bioregistry merged,linkml,https://bioregistry.io/linkml:,prefix_alias,bioregistry merged,linkrel,https://www.w3.org/ns/iana/link-relations/relation#,namespace_alias,prefixcc merged,lio,http://purl.org/net/lio#,canonical,prefixcc +merged,liph,https://gallosiciliani.unict.it/ns/lpont#,canonical,prefixcc merged,LIPID MAPS,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry merged,LIPID_MAPS_CLASS,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry merged,LIPID_MAPS_INSTANCE,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry @@ -8354,6 +8372,7 @@ merged,MAGGOT,https://identifiers.org/maggot:,prefix_alias,bioregistry merged,MAGGOT,https://pmb-bordeaux.fr/maggot/metadata/,prefix_alias,bioregistry merged,magmardl,http://www.semanticweb.org/magma-core/rdl#,canonical,prefixcc merged,magmauser,http://www.semanticweb.org/magma-core/user#,canonical,prefixcc +merged,maid,https://mutual-aid.app/ns/core#,canonical,prefixcc merged,MAIZEGDB,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry merged,MAIZEGDB.LOCUS,http://bio2rdf.org/maizegdb:,prefix_alias,bioregistry merged,MAIZEGDB.LOCUS,http://bioregistry.io/MaizeGDB:,prefix_alias,bioregistry @@ -8374,6 +8393,7 @@ merged,MAIZEGDB.LOCUS,https://www.maizegdb.org/data_center/gene_product?id=,pref merged,MAIZEGDB.LOCUS,https://www.maizegdb.org/gene_center/gene/,prefix_alias,bioregistry merged,MAIZEGDB.LOCUS,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry merged,MaizeGDB_Locus,http://identifiers.org/maizegdb.locus/,canonical,go +merged,makeup,http://example.org/makeup#,canonical,prefixcc merged,malaka,http://george.gr/,canonical,prefixcc merged,malignneo,http://www.agfa.com/w3c/2009/malignantNeoplasm#,canonical,prefixcc merged,mammal,http://lod.taxonconcept.org/ontology/p01/Mammalia/index.owl#,canonical,prefixcc @@ -8573,6 +8593,7 @@ merged,MEDLINEPLUS,https://identifiers.org/medlineplus:,prefix_alias,bioregistry merged,MEDLINEPLUS,https://n2t.net/medlineplus:,prefix_alias,bioregistry merged,MEDRA,http://identifiers.org/meddra/,namespace_alias,bioregistry merged,medred,http://w3id.org/medred/medred#,canonical,prefixcc +merged,mee,http://www.w3.org/ns/pim/meeting#,canonical,prefixcc merged,meeting,http://www.w3.org/2002/07/meeting#,canonical,prefixcc merged,meetup,http://www.lotico.com/meetup/,canonical,prefixcc merged,mei,http://www.music-encoding.org/ns/mei/,canonical,prefixcc @@ -9670,6 +9691,7 @@ merged,MZSPEC,https://identifiers.org/mzspec/mzspec:,prefix_alias,bioregistry merged,MZSPEC,https://n2t.net/mzspec:,prefix_alias,bioregistry merged,MZSPEC,https://proteomecentral.proteomexchange.org/usi/?usi=mzspec:,prefix_alias,bioregistry merged,MZSPEC,https://www.ebi.ac.uk/pride/archive/usi?usi=mzspec:,prefix_alias,bioregistry +merged,nace2,http://data.europa.eu/ux2/nace2/,canonical,prefixcc merged,nalt,https://lod.nal.usda.gov/nalt/,canonical,prefixcc merged,name,http://example.org/name#,canonical,prefixcc merged,namespaces,https://vg.no/,canonical,prefixcc @@ -11092,6 +11114,7 @@ merged,OPENWEMI,https://dcmi.github.io/openwemi/ns#,canonical,bioregistry merged,OPENWEMI,http://bioregistry.io/openwemi:,prefix_alias,bioregistry merged,OPENWEMI,http://dcmi.github.io/openwemi/ns#,prefix_alias,bioregistry merged,OPENWEMI,https://bioregistry.io/openwemi:,prefix_alias,bioregistry +merged,openwemi,https://ns.dublincore.org/openwemi/,prefix_alias,prefixcc merged,oper,http://sweet.jpl.nasa.gov/2.0/mathOperation.owl#,canonical,prefixcc merged,OPL,http://purl.obolibrary.org/obo/OPL_,canonical,obo merged,OPL,http://bioregistry.io/OPL:,prefix_alias,bioregistry @@ -11579,8 +11602,8 @@ merged,PAXDB.PROTEIN,https://identifiers.org/paxdb.protein/,prefix_alias,bioregi merged,PAXDB.PROTEIN,https://identifiers.org/paxdb.protein:,prefix_alias,bioregistry merged,PAXDB.PROTEIN,https://n2t.net/paxdb.protein:,prefix_alias,bioregistry merged,PAXDB.PROTEIN,https://pax-db.org/#!protein/,prefix_alias,bioregistry -merged,pay,http://reference.data.gov.uk/def/payment#,namespace_alias,prefixcc -merged,payment,http://reference.data.gov.uk/def/payment#,canonical,prefixcc +merged,pay,http://reference.data.gov.uk/def/payment#,canonical,prefixcc +merged,payment,http://reference.data.gov.uk/def/payment#,namespace_alias,prefixcc merged,PAZAR,http://identifiers.org/pazar/,canonical,bioregistry merged,PAZAR,http://bio2rdf.org/pazar:,prefix_alias,bioregistry merged,PAZAR,http://bioregistry.io/pazar:,prefix_alias,bioregistry @@ -12245,7 +12268,7 @@ merged,PMDB,https://identifiers.org/pmdb:,prefix_alias,bioregistry merged,PMDB,https://mi.caspur.it/PMDB/user/search.php?idsearch=,prefix_alias,bioregistry merged,PMDB,https://n2t.net/pmdb:,prefix_alias,bioregistry merged,pmhb,http://pmhb.org/,canonical,prefixcc -merged,PMID,http://identifiers.org/pubmed/,namespace_alias,bioregistry +merged,PMID,http://identifiers.org/pubmed/,canonical,go merged,pml,http://provenanceweb.org/ns/pml#,canonical,prefixcc merged,pmlj,http://inference-web.org/2.0/pml-justification.owl#,canonical,prefixcc merged,pmlp,http://inference-web.org/2.0/pml-provenance.owl#,canonical,prefixcc @@ -12661,6 +12684,7 @@ merged,PSIPAR,https://identifiers.org/psipar:,prefix_alias,bioregistry merged,PSIPAR,https://n2t.net/psipar:,prefix_alias,bioregistry merged,PSIPAR,https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:,prefix_alias,bioregistry merged,psm,https://paul.ti.rw.fau.de/~jo00defe/ont/psm#,canonical,prefixcc +merged,psn,https://purl.org/psn/vocab#,canonical,prefixcc merged,PSO,http://purl.obolibrary.org/obo/PSO_,canonical,obo merged,PSO,http://bioregistry.io/PSO:,prefix_alias,bioregistry merged,PSO,http://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_,prefix_alias,bioregistry @@ -12768,7 +12792,6 @@ merged,PUBLONS.RESEARCHER,https://publons.com/researcher/,canonical,bioregistry merged,PUBLONS.RESEARCHER,http://bioregistry.io/publons.researcher:,prefix_alias,bioregistry merged,PUBLONS.RESEARCHER,http://publons.com/researcher/,prefix_alias,bioregistry merged,PUBLONS.RESEARCHER,https://bioregistry.io/publons.researcher:,prefix_alias,bioregistry -merged,PUBMED,http://identifiers.org/pubmed/,canonical,bioregistry merged,PUBMED,http://bio2rdf.org/pubmed:,prefix_alias,bioregistry merged,PUBMED,http://bioregistry.io/MEDLINE:,prefix_alias,bioregistry merged,PUBMED,http://bioregistry.io/PMID:,prefix_alias,bioregistry @@ -12801,6 +12824,7 @@ merged,PUBMED,https://scholia.toolforge.org/pubmed/,prefix_alias,bioregistry merged,PUBMED,https://www.hubmed.org/display.cgi?uids=,prefix_alias,bioregistry merged,PUBMED,https://www.ncbi.nlm.nih.gov/pubmed/,prefix_alias,bioregistry merged,pubmed,http://bio2rdf.org/pubmed_vocabulary:,prefix_alias,prefixcc +merged,PUBMED,http://identifiers.org/pubmed/,namespace_alias,bioregistry merged,puc,http://purl.org/NET/puc#,canonical,prefixcc merged,puelia,http://kwijibo.talis.com/vocabs/puelia#,canonical,prefixcc merged,puml,http://plantuml.com/ontology#,canonical,prefixcc @@ -13121,6 +13145,7 @@ merged,RDFA,https://www.w3.org/ns/rdfa#,prefix_alias,bioregistry merged,rdfdata,http://rdf.data-vocabulary.org/rdf.xml#,canonical,prefixcc merged,rdfdf,http://www.openlinksw.com/virtrdf-data-formats#,canonical,prefixcc merged,rdfg,http://www.w3.org/2004/03/trix/rdfg-1/,canonical,prefixcc +merged,rdfl,https://w3id.org/rdf-lens/ontology#,canonical,prefixcc merged,rdfp,https://w3id.org/rdfp/,canonical,prefixcc merged,rdfs,http://www.w3.org/2000/01/rdf-schema#,canonical,linkml merged,rdfs,http://bioregistry.io/rdfs:,prefix_alias,bioregistry @@ -13754,6 +13779,7 @@ merged,schema,http://bioregistry.io/schemaorg:,prefix_alias,bioregistry merged,schema,https://bioregistry.io/schema:,prefix_alias,bioregistry merged,schema,https://bioregistry.io/schemaorg:,prefix_alias,bioregistry merged,schemaorg,https://schema.org/,namespace_alias,bioregistry +merged,schemas,https://schema.org/,namespace_alias,prefixcc merged,scho,http://www.scholarlydata.org/ontology/conference-ontology.owl#,canonical,prefixcc merged,schoi,https://w3id.org/scholarlydata/ontology/indicators-ontology.owl#,canonical,prefixcc merged,SCHOLIA.RESOURCE,https://bioregistry.io/metaregistry/scholia/,canonical,bioregistry @@ -15147,6 +15173,7 @@ merged,test2,http://this.invalid/test2#,canonical,prefixcc merged,text,http://jena.apache.org/text#,canonical,prefixcc merged,textgrid,https://textgridrep.org/,canonical,prefixcc merged,tg,https://triplydb.com/Triply/tg/def/,canonical,prefixcc +merged,tgc,http://www.hds.utc.fr/tg#,canonical,prefixcc merged,TGD,http://identifiers.org/tgd/,canonical,go merged,TGD,http://bio2rdf.org/tgd:,prefix_alias,bioregistry merged,TGD,http://bioregistry.io/tgd:,prefix_alias,bioregistry @@ -15267,6 +15294,7 @@ merged,TOPDB,https://n2t.net/topdb:,prefix_alias,bioregistry merged,TOPDB,https://topdb.enzim.hu/?m=show&id=,prefix_alias,bioregistry merged,TOPFIND,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged,topo,http://data.ign.fr/def/topo#,canonical,prefixcc +merged,tops,http://www.topbraid.org/tops#,canonical,prefixcc merged,tosh,http://topbraid.org/tosh#,canonical,prefixcc merged,TOXOPLASMA,http://identifiers.org/toxoplasma/,canonical,bioregistry merged,TOXOPLASMA,http://bioregistry.io/toxoplasma:,prefix_alias,bioregistry @@ -15331,6 +15359,7 @@ merged,TREEFAM,https://identifiers.org/treefam:,prefix_alias,bioregistry merged,TREEFAM,https://n2t.net/treefam:,prefix_alias,bioregistry merged,TREEFAM,https://www.treefam.org/cgi-bin/TFinfo.pl?ac=,prefix_alias,bioregistry merged,TREEFAM,https://www.treefam.org/family/,prefix_alias,bioregistry +merged,TreeGrafter,http://identifiers.org/panther.family/,namespace_alias,go merged,trek,https://w3id.org/trek/,canonical,prefixcc merged,TRICDB,http://identifiers.org/tricdb/,canonical,bioregistry merged,TRICDB,http://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias,bioregistry @@ -16081,6 +16110,7 @@ merged,va,http://code-research.eu/ontology/visual-analytics#,canonical,prefixcc merged,vacseen1,http://www.semanticweb.org/parthasb/ontologies/2014/6/vacseen1/,canonical,prefixcc merged,vaem,http://www.linkedmodel.org/schema/vaem#,canonical,prefixcc merged,vag,http://www.essepuntato.it/2013/10/vagueness/,canonical,prefixcc +merged,vair,https://w3id.org/vair#,canonical,prefixcc merged,VALIDATORDB,http://identifiers.org/pdb/,namespace_alias,bioregistry merged,value,http://gfgfd.vs/,canonical,prefixcc merged,valueflows,https://w3id.org/valueflows/,canonical,prefixcc diff --git a/src/prefixmaps/data/merged.monarch.csv b/src/prefixmaps/data/merged.monarch.csv index b27daff..502a492 100644 --- a/src/prefixmaps/data/merged.monarch.csv +++ b/src/prefixmaps/data/merged.monarch.csv @@ -185,6 +185,7 @@ merged.monarch,AfPO,http://bioregistry.io/AfPO:,prefix_alias,bioregistry merged.monarch,AfPO,https://bioregistry.io/AfPO:,prefix_alias,bioregistry merged.monarch,AfPO,https://purl.obolibrary.org/obo/AfPO_,prefix_alias,bioregistry merged.monarch,afr,http://purl.allotrope.org/ontologies/result#,canonical,prefixcc +merged.monarch,after,http://rds.posccaesar.org/ontology/plm/ds/,canonical,prefixcc merged.monarch,AFTOL.TAXONOMY,http://identifiers.org/aftol.taxonomy/,canonical,bioregistry merged.monarch,AFTOL.TAXONOMY,http://bioregistry.io/aftol.taxonomy:,prefix_alias,bioregistry merged.monarch,AFTOL.TAXONOMY,http://identifiers.org/aftol.taxonomy:,prefix_alias,bioregistry @@ -251,7 +252,9 @@ merged.monarch,AIO,https://w3id.org/aio/,canonical,bioregistry merged.monarch,AIO,http://bioregistry.io/aio:,prefix_alias,bioregistry merged.monarch,AIO,http://w3id.org/aio/,prefix_alias,bioregistry merged.monarch,AIO,https://bioregistry.io/aio:,prefix_alias,bioregistry +merged.monarch,aio,https://paul.ti.rw.fau.de/~jo00defe/SemWoT/aio#,prefix_alias,prefixcc merged.monarch,air,http://dig.csail.mit.edu/TAMI/2007/amord/air#,canonical,prefixcc +merged.monarch,airo,https://w3id.org/airo#,canonical,prefixcc merged.monarch,airport,http://www.daml.org/2001/10/html/airport-ont#,canonical,prefixcc merged.monarch,airs,https://raw.githubusercontent.com/airs-linked-data/lov/latest/src/airs_vocabulary.ttl#,canonical,prefixcc merged.monarch,AISM,http://purl.obolibrary.org/obo/AISM_,canonical,obo @@ -319,6 +322,7 @@ merged.monarch,AMPHX,https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http:/ merged.monarch,ams,http://data.amadeus.com/,canonical,prefixcc merged.monarch,amsl,http://vocab.ub.uni-leipzig.de/amsl/,canonical,prefixcc merged.monarch,amt,http://academic-meta-tool.xyz/vocab#,canonical,prefixcc +merged.monarch,amv,https://w3id.org/amv/,canonical,prefixcc merged.monarch,anca,http://users.utcluj.ro/~raluca/rdf_ontologies_ralu/ralu_modified_ontology_pizzas2_0#,canonical,prefixcc merged.monarch,aneo,http://akonadi-project.org/ontologies/aneo#,canonical,prefixcc merged.monarch,ann,http://www.w3.org/2000/10/annotation-ns#,canonical,prefixcc @@ -422,6 +426,7 @@ merged.monarch,api,http://purl.org/linked-data/api/vocab#,canonical,prefixcc merged.monarch,APID.INTERACTIONS,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged.monarch,APIDB_PLASMODB,http://identifiers.org/plasmodb/,namespace_alias,bioregistry merged.monarch,apivc,http://purl.org/linked-data/api/vocab#,namespace_alias,prefixcc +merged.monarch,apmwg,http://apmwg.ovh/,canonical,prefixcc merged.monarch,APO,http://purl.obolibrary.org/obo/APO_,canonical,obo merged.monarch,APO,http://bioregistry.io/APO:,prefix_alias,bioregistry merged.monarch,APO,http://www.ebi.ac.uk/ols/ontologies/apo/terms?iri=http://purl.obolibrary.org/obo/APO_,prefix_alias,bioregistry @@ -1135,6 +1140,7 @@ merged.monarch,BIOMINDER,https://datalab.rwth-aachen.de/MINDER/resource/,prefix_ merged.monarch,BIOMINDER,https://identifiers.org/biominder/,prefix_alias,bioregistry merged.monarch,BIOMINDER,https://identifiers.org/biominder:,prefix_alias,bioregistry merged.monarch,BIOMINDER,https://n2t.net/biominder:,prefix_alias,bioregistry +merged.monarch,biomodels,http://purl.obolibrary.org/obo/KISAO_,namespace_alias,prefixcc merged.monarch,BIOMODELS.DB,http://identifiers.org/biomodels.db/,canonical,bioregistry merged.monarch,BIOMODELS.DB,http://bio2rdf.org/biomodels:,prefix_alias,bioregistry merged.monarch,BIOMODELS.DB,http://biomodels.caltech.edu/,prefix_alias,bioregistry @@ -1422,6 +1428,7 @@ merged.monarch,bn,http://babelnet.org/rdf/,canonical,prefixcc merged.monarch,bne,http://datos.bne.es/resource/,canonical,prefixcc merged.monarch,bner,http://datos.bne.es/resource/,namespace_alias,prefixcc merged.monarch,bnf,http://www.w3.org/2000/10/swap/grammar/bnf#,canonical,prefixcc +merged.monarch,bng,https://w3id.org/dob/voc/epsg-27700#,canonical,prefixcc merged.monarch,bob,http://good.dad/meaning/bob#,canonical,prefixcc merged.monarch,BOLD.TAXONOMY,http://identifiers.org/bold.taxonomy/,canonical,bioregistry merged.monarch,BOLD.TAXONOMY,http://bio2rdf.org/bold:,prefix_alias,bioregistry @@ -2406,6 +2413,7 @@ merged.monarch,CMPO,http://www.ebi.ac.uk/cmpo/CMPO_,canonical,bioregistry merged.monarch,CMPO,http://bioregistry.io/cmpo:,prefix_alias,bioregistry merged.monarch,CMPO,https://bioregistry.io/cmpo:,prefix_alias,bioregistry merged.monarch,CMPO,https://www.ebi.ac.uk/cmpo/CMPO_,prefix_alias,bioregistry +merged.monarch,cmso,http://purls.helmholtz-metadaten.de/cmso/,canonical,prefixcc merged.monarch,cnt,http://www.w3.org/2011/content#,canonical,prefixcc merged.monarch,co,http://purl.org/ontology/co/core#,canonical,prefixcc merged.monarch,CO_320,https://cropontology.org/rdf/CO_320:,canonical,bioregistry @@ -2812,6 +2820,7 @@ merged.monarch,CPT,http://www.aapc.com/codes/cpt-codes/,prefix_alias,bioregistry merged.monarch,CPT,https://bioregistry.io/ama-cpt:,prefix_alias,bioregistry merged.monarch,CPT,https://bioregistry.io/cpt:,prefix_alias,bioregistry merged.monarch,cpv,http://purl.org/weso/cpv/,canonical,prefixcc +merged.monarch,cr,http://mlcommons.org/croissant/,canonical,prefixcc merged.monarch,CRAN,https://cran.r-project.org/web/packages/,canonical,bioregistry merged.monarch,CRAN,http://CRAN.R-project.org/package=,prefix_alias,bioregistry merged.monarch,CRAN,http://bioregistry.io/cran:,prefix_alias,bioregistry @@ -2842,9 +2851,10 @@ merged.monarch,CRISPRDB,https://n2t.net/crisprdb:,prefix_alias,bioregistry merged.monarch,crm,http://www.cidoc-crm.org/cidoc-crm/,canonical,prefixcc merged.monarch,crmdig,http://www.ics.forth.gr/isl/CRMdig/,canonical,prefixcc merged.monarch,crmeh,http://purl.org/crmeh#,canonical,prefixcc +merged.monarch,crmgeo,http://www.ics.forth.gr/isl/CRMgeo/,canonical,prefixcc merged.monarch,crminf,http://www.cidoc-crm.org/cidoc-crm/CRMinf/,canonical,prefixcc merged.monarch,crml,http://semweb.mmlab.be/ns/rml/condition#,canonical,prefixcc -merged.monarch,crmsci,http://cidoc-crm.org/crmsci/,canonical,prefixcc +merged.monarch,crmsci,http://www.cidoc-crm.org/extensions/crmsci/,canonical,prefixcc merged.monarch,CRO,http://purl.obolibrary.org/obo/CRO_,canonical,obo merged.monarch,CRO,http://bioregistry.io/CRO:,prefix_alias,bioregistry merged.monarch,CRO,http://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_,prefix_alias,bioregistry @@ -3542,6 +3552,7 @@ merged.monarch,DID,https://identifiers.org/DID:,prefix_alias,bioregistry merged.monarch,DID,https://identifiers.org/did/did:,prefix_alias,bioregistry merged.monarch,DID,https://n2t.net/did:,prefix_alias,bioregistry merged.monarch,DID,https://uniresolver.io/#did:,prefix_alias,bioregistry +merged.monarch,did,https://w3id.org/dob/id/,prefix_alias,prefixcc merged.monarch,DIDEO,http://purl.obolibrary.org/obo/DIDEO_,canonical,obo merged.monarch,DIDEO,http://bioregistry.io/DIDEO:,prefix_alias,bioregistry merged.monarch,DIDEO,http://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_,prefix_alias,bioregistry @@ -3648,6 +3659,7 @@ merged.monarch,doap,http://bioregistry.io/doap:,prefix_alias,bioregistry merged.monarch,doap,https://bioregistry.io/doap:,prefix_alias,bioregistry merged.monarch,doap,https://usefulinc.com/ns/doap#,prefix_alias,bioregistry merged.monarch,doas,http://deductions.github.io/doas.owl.ttl#,canonical,prefixcc +merged.monarch,dob,https://w3id.org/dob/voc#,canonical,prefixcc merged.monarch,doc,http://www.w3.org/2000/10/swap/pim/doc#,canonical,prefixcc merged.monarch,docam,https://www.docam.ca/glossaurus/,canonical,prefixcc merged.monarch,docbook,http://docbook.org/ns/docbook/,canonical,prefixcc @@ -3732,6 +3744,7 @@ merged.monarch,DOOR,https://identifiers.org/door/,prefix_alias,bioregistry merged.monarch,DOOR,https://identifiers.org/door:,prefix_alias,bioregistry merged.monarch,DOOR,https://n2t.net/door:,prefix_alias,bioregistry merged.monarch,door,http://kannel.open.ac.uk/ontology#,prefix_alias,prefixcc +merged.monarch,dop,https://w3id.org/dob/voc/prop#,canonical,prefixcc merged.monarch,DOQCS.MODEL,http://identifiers.org/doqcs.model/,canonical,bioregistry merged.monarch,DOQCS.MODEL,http://bio2rdf.org/doqcs.model:,prefix_alias,bioregistry merged.monarch,DOQCS.MODEL,http://bioregistry.io/doqcs.model:,prefix_alias,bioregistry @@ -4156,6 +4169,7 @@ merged.monarch,ecoll,http://purl.org/ceu/eco/1.0#,canonical,prefixcc merged.monarch,ecore,http://www.eclipse.org/emf/2002/Ecore#,canonical,prefixcc merged.monarch,ecos,http://purl.org/ecos#,canonical,prefixcc merged.monarch,ecowlim,http://ecowlim.tfri.gov.tw/lode/resource/,canonical,prefixcc +merged.monarch,ecp,http://www.ebu.ch/metadata/ontologies/ebucoreplus#,canonical,prefixcc merged.monarch,ecpo,http://purl.org/ontology/ecpo#,canonical,prefixcc merged.monarch,ecrm,http://erlangen-crm.org/current/,canonical,prefixcc merged.monarch,ecs,http://rdf.ecs.soton.ac.uk/ontology/ecs#,canonical,prefixcc @@ -4250,6 +4264,7 @@ merged.monarch,edgarcik,http://edgarwrap.ontologycentral.com/cik/,canonical,pref merged.monarch,edm,http://www.europeana.eu/schemas/edm/,canonical,prefixcc merged.monarch,edo,http://semanticweb.org/edo#,canonical,prefixcc merged.monarch,edr,https://w3id.org/laas-iot/edr#,canonical,prefixcc +merged.monarch,edtf,http://id.loc.gov/datatypes/EDTFScheme/,canonical,prefixcc merged.monarch,edu,https://schema.edu.ee/,canonical,prefixcc merged.monarch,edupro,http://ns.inria.fr/semed/eduprogression#,canonical,prefixcc merged.monarch,eem,http://purl.org/eem#,canonical,prefixcc @@ -5598,7 +5613,7 @@ merged.monarch,GIARDIADB,https://giardiadb.org/giardiadb/showRecord.do?name=Gene merged.monarch,GIARDIADB,https://identifiers.org/giardiadb/,prefix_alias,bioregistry merged.monarch,GIARDIADB,https://identifiers.org/giardiadb:,prefix_alias,bioregistry merged.monarch,GIARDIADB,https://n2t.net/giardiadb:,prefix_alias,bioregistry -merged.monarch,gist,https://ontologies.semanticarts.com/o/gistCore#,canonical,prefixcc +merged.monarch,gist,http://ontologies.semanticarts.com/gist#,canonical,prefixcc merged.monarch,GITHUB,http://identifiers.org/github/,canonical,bioregistry merged.monarch,GITHUB,http://bioregistry.io/github:,prefix_alias,bioregistry merged.monarch,GITHUB,http://github.com/,prefix_alias,bioregistry @@ -5881,6 +5896,7 @@ merged.monarch,GO.RESOURCE,https://bioregistry.io/metaregistry/go/,canonical,bio merged.monarch,GO.RESOURCE,http://bioregistry.io/go.resource:,prefix_alias,bioregistry merged.monarch,GO.RESOURCE,http://bioregistry.io/metaregistry/go/,prefix_alias,bioregistry merged.monarch,GO.RESOURCE,https://bioregistry.io/go.resource:,prefix_alias,bioregistry +merged.monarch,GO_REF,http://purl.obolibrary.org/obo/go/references/,canonical,go merged.monarch,GOA,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged.monarch,goaf,http://goaf.fr/goaf#,canonical,prefixcc merged.monarch,goavoc,http://bio2rdf.org/goa_vocabulary:,canonical,prefixcc @@ -6138,7 +6154,7 @@ merged.monarch,GRSDB,https://bioregistry.io/grsdb:,prefix_alias,bioregistry merged.monarch,GRSDB,https://identifiers.org/grsdb/,prefix_alias,bioregistry merged.monarch,GRSDB,https://identifiers.org/grsdb:,prefix_alias,bioregistry merged.monarch,GRSDB,https://n2t.net/grsdb:,prefix_alias,bioregistry -merged.monarch,gs1,http://gs1.org/voc/,canonical,prefixcc +merged.monarch,gs1,https://ref.gs1.org/voc/,canonical,prefixcc merged.monarch,gso,http://www.w3.org/2006/gen/ont#,canonical,prefixcc merged.monarch,gsp,http://www.opengis.net/ont/geosparql#,namespace_alias,prefixcc merged.monarch,GSSO,http://purl.obolibrary.org/obo/GSSO_,canonical,obo @@ -7885,6 +7901,7 @@ merged.monarch,kpd,http://purl.org/kpd/,canonical,prefixcc merged.monarch,ksam,http://kulturarvsdata.se/ksamsok#,namespace_alias,prefixcc merged.monarch,ksamsok,http://kulturarvsdata.se/ksamsok#,namespace_alias,prefixcc merged.monarch,kupkb,http://www.e-lico.eu/data/kupkb/,canonical,prefixcc +merged.monarch,kvasir,https://kvasir.discover.ilabt.imec.be/vocab#,canonical,prefixcc merged.monarch,kw,http://kwantu.net/kw/,canonical,prefixcc merged.monarch,kwijibo,http://kwijibo.talis.com/,canonical,prefixcc merged.monarch,l2sp,http://www.linked2safety-project.eu/properties/,canonical,prefixcc @@ -8130,6 +8147,7 @@ merged.monarch,linkml,http://w3id.org/linkml/,prefix_alias,bioregistry merged.monarch,linkml,https://bioregistry.io/linkml:,prefix_alias,bioregistry merged.monarch,linkrel,https://www.w3.org/ns/iana/link-relations/relation#,namespace_alias,prefixcc merged.monarch,lio,http://purl.org/net/lio#,canonical,prefixcc +merged.monarch,liph,https://gallosiciliani.unict.it/ns/lpont#,canonical,prefixcc merged.monarch,LIPID MAPS,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry merged.monarch,LIPID_MAPS_CLASS,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry merged.monarch,LIPID_MAPS_INSTANCE,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry @@ -8354,6 +8372,7 @@ merged.monarch,MAGGOT,https://identifiers.org/maggot:,prefix_alias,bioregistry merged.monarch,MAGGOT,https://pmb-bordeaux.fr/maggot/metadata/,prefix_alias,bioregistry merged.monarch,magmardl,http://www.semanticweb.org/magma-core/rdl#,canonical,prefixcc merged.monarch,magmauser,http://www.semanticweb.org/magma-core/user#,canonical,prefixcc +merged.monarch,maid,https://mutual-aid.app/ns/core#,canonical,prefixcc merged.monarch,MAIZEGDB,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry merged.monarch,MAIZEGDB.LOCUS,http://bio2rdf.org/maizegdb:,prefix_alias,bioregistry merged.monarch,MAIZEGDB.LOCUS,http://bioregistry.io/MaizeGDB:,prefix_alias,bioregistry @@ -8374,6 +8393,7 @@ merged.monarch,MAIZEGDB.LOCUS,https://www.maizegdb.org/data_center/gene_product? merged.monarch,MAIZEGDB.LOCUS,https://www.maizegdb.org/gene_center/gene/,prefix_alias,bioregistry merged.monarch,MAIZEGDB.LOCUS,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry merged.monarch,MaizeGDB_Locus,http://identifiers.org/maizegdb.locus/,canonical,go +merged.monarch,makeup,http://example.org/makeup#,canonical,prefixcc merged.monarch,malaka,http://george.gr/,canonical,prefixcc merged.monarch,malignneo,http://www.agfa.com/w3c/2009/malignantNeoplasm#,canonical,prefixcc merged.monarch,mammal,http://lod.taxonconcept.org/ontology/p01/Mammalia/index.owl#,canonical,prefixcc @@ -8573,6 +8593,7 @@ merged.monarch,MEDLINEPLUS,https://identifiers.org/medlineplus:,prefix_alias,bio merged.monarch,MEDLINEPLUS,https://n2t.net/medlineplus:,prefix_alias,bioregistry merged.monarch,MEDRA,http://identifiers.org/meddra/,namespace_alias,bioregistry merged.monarch,medred,http://w3id.org/medred/medred#,canonical,prefixcc +merged.monarch,mee,http://www.w3.org/ns/pim/meeting#,canonical,prefixcc merged.monarch,meeting,http://www.w3.org/2002/07/meeting#,canonical,prefixcc merged.monarch,meetup,http://www.lotico.com/meetup/,canonical,prefixcc merged.monarch,mei,http://www.music-encoding.org/ns/mei/,canonical,prefixcc @@ -9670,6 +9691,7 @@ merged.monarch,MZSPEC,https://identifiers.org/mzspec/mzspec:,prefix_alias,bioreg merged.monarch,MZSPEC,https://n2t.net/mzspec:,prefix_alias,bioregistry merged.monarch,MZSPEC,https://proteomecentral.proteomexchange.org/usi/?usi=mzspec:,prefix_alias,bioregistry merged.monarch,MZSPEC,https://www.ebi.ac.uk/pride/archive/usi?usi=mzspec:,prefix_alias,bioregistry +merged.monarch,nace2,http://data.europa.eu/ux2/nace2/,canonical,prefixcc merged.monarch,nalt,https://lod.nal.usda.gov/nalt/,canonical,prefixcc merged.monarch,name,http://example.org/name#,canonical,prefixcc merged.monarch,namespaces,https://vg.no/,canonical,prefixcc @@ -11092,6 +11114,7 @@ merged.monarch,OPENWEMI,https://dcmi.github.io/openwemi/ns#,canonical,bioregistr merged.monarch,OPENWEMI,http://bioregistry.io/openwemi:,prefix_alias,bioregistry merged.monarch,OPENWEMI,http://dcmi.github.io/openwemi/ns#,prefix_alias,bioregistry merged.monarch,OPENWEMI,https://bioregistry.io/openwemi:,prefix_alias,bioregistry +merged.monarch,openwemi,https://ns.dublincore.org/openwemi/,prefix_alias,prefixcc merged.monarch,oper,http://sweet.jpl.nasa.gov/2.0/mathOperation.owl#,canonical,prefixcc merged.monarch,OPL,http://purl.obolibrary.org/obo/OPL_,canonical,obo merged.monarch,OPL,http://bioregistry.io/OPL:,prefix_alias,bioregistry @@ -11579,8 +11602,8 @@ merged.monarch,PAXDB.PROTEIN,https://identifiers.org/paxdb.protein/,prefix_alias merged.monarch,PAXDB.PROTEIN,https://identifiers.org/paxdb.protein:,prefix_alias,bioregistry merged.monarch,PAXDB.PROTEIN,https://n2t.net/paxdb.protein:,prefix_alias,bioregistry merged.monarch,PAXDB.PROTEIN,https://pax-db.org/#!protein/,prefix_alias,bioregistry -merged.monarch,pay,http://reference.data.gov.uk/def/payment#,namespace_alias,prefixcc -merged.monarch,payment,http://reference.data.gov.uk/def/payment#,canonical,prefixcc +merged.monarch,pay,http://reference.data.gov.uk/def/payment#,canonical,prefixcc +merged.monarch,payment,http://reference.data.gov.uk/def/payment#,namespace_alias,prefixcc merged.monarch,PAZAR,http://identifiers.org/pazar/,canonical,bioregistry merged.monarch,PAZAR,http://bio2rdf.org/pazar:,prefix_alias,bioregistry merged.monarch,PAZAR,http://bioregistry.io/pazar:,prefix_alias,bioregistry @@ -12245,7 +12268,7 @@ merged.monarch,PMDB,https://identifiers.org/pmdb:,prefix_alias,bioregistry merged.monarch,PMDB,https://mi.caspur.it/PMDB/user/search.php?idsearch=,prefix_alias,bioregistry merged.monarch,PMDB,https://n2t.net/pmdb:,prefix_alias,bioregistry merged.monarch,pmhb,http://pmhb.org/,canonical,prefixcc -merged.monarch,PMID,http://identifiers.org/pubmed/,namespace_alias,bioregistry +merged.monarch,PMID,http://identifiers.org/pubmed/,canonical,go merged.monarch,pml,http://provenanceweb.org/ns/pml#,canonical,prefixcc merged.monarch,pmlj,http://inference-web.org/2.0/pml-justification.owl#,canonical,prefixcc merged.monarch,pmlp,http://inference-web.org/2.0/pml-provenance.owl#,canonical,prefixcc @@ -12661,6 +12684,7 @@ merged.monarch,PSIPAR,https://identifiers.org/psipar:,prefix_alias,bioregistry merged.monarch,PSIPAR,https://n2t.net/psipar:,prefix_alias,bioregistry merged.monarch,PSIPAR,https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:,prefix_alias,bioregistry merged.monarch,psm,https://paul.ti.rw.fau.de/~jo00defe/ont/psm#,canonical,prefixcc +merged.monarch,psn,https://purl.org/psn/vocab#,canonical,prefixcc merged.monarch,PSO,http://purl.obolibrary.org/obo/PSO_,canonical,obo merged.monarch,PSO,http://bioregistry.io/PSO:,prefix_alias,bioregistry merged.monarch,PSO,http://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_,prefix_alias,bioregistry @@ -12768,7 +12792,6 @@ merged.monarch,PUBLONS.RESEARCHER,https://publons.com/researcher/,canonical,bior merged.monarch,PUBLONS.RESEARCHER,http://bioregistry.io/publons.researcher:,prefix_alias,bioregistry merged.monarch,PUBLONS.RESEARCHER,http://publons.com/researcher/,prefix_alias,bioregistry merged.monarch,PUBLONS.RESEARCHER,https://bioregistry.io/publons.researcher:,prefix_alias,bioregistry -merged.monarch,PUBMED,http://identifiers.org/pubmed/,canonical,bioregistry merged.monarch,PUBMED,http://bio2rdf.org/pubmed:,prefix_alias,bioregistry merged.monarch,PUBMED,http://bioregistry.io/MEDLINE:,prefix_alias,bioregistry merged.monarch,PUBMED,http://bioregistry.io/PMID:,prefix_alias,bioregistry @@ -12801,6 +12824,7 @@ merged.monarch,PUBMED,https://scholia.toolforge.org/pubmed/,prefix_alias,bioregi merged.monarch,PUBMED,https://www.hubmed.org/display.cgi?uids=,prefix_alias,bioregistry merged.monarch,PUBMED,https://www.ncbi.nlm.nih.gov/pubmed/,prefix_alias,bioregistry merged.monarch,pubmed,http://bio2rdf.org/pubmed_vocabulary:,prefix_alias,prefixcc +merged.monarch,PUBMED,http://identifiers.org/pubmed/,namespace_alias,bioregistry merged.monarch,puc,http://purl.org/NET/puc#,canonical,prefixcc merged.monarch,puelia,http://kwijibo.talis.com/vocabs/puelia#,canonical,prefixcc merged.monarch,puml,http://plantuml.com/ontology#,canonical,prefixcc @@ -13121,6 +13145,7 @@ merged.monarch,RDFA,https://www.w3.org/ns/rdfa#,prefix_alias,bioregistry merged.monarch,rdfdata,http://rdf.data-vocabulary.org/rdf.xml#,canonical,prefixcc merged.monarch,rdfdf,http://www.openlinksw.com/virtrdf-data-formats#,canonical,prefixcc merged.monarch,rdfg,http://www.w3.org/2004/03/trix/rdfg-1/,canonical,prefixcc +merged.monarch,rdfl,https://w3id.org/rdf-lens/ontology#,canonical,prefixcc merged.monarch,rdfp,https://w3id.org/rdfp/,canonical,prefixcc merged.monarch,rdfs,http://www.w3.org/2000/01/rdf-schema#,canonical,linkml merged.monarch,rdfs,http://bioregistry.io/rdfs:,prefix_alias,bioregistry @@ -13754,6 +13779,7 @@ merged.monarch,schema,http://bioregistry.io/schemaorg:,prefix_alias,bioregistry merged.monarch,schema,https://bioregistry.io/schema:,prefix_alias,bioregistry merged.monarch,schema,https://bioregistry.io/schemaorg:,prefix_alias,bioregistry merged.monarch,schemaorg,https://schema.org/,namespace_alias,bioregistry +merged.monarch,schemas,https://schema.org/,namespace_alias,prefixcc merged.monarch,scho,http://www.scholarlydata.org/ontology/conference-ontology.owl#,canonical,prefixcc merged.monarch,schoi,https://w3id.org/scholarlydata/ontology/indicators-ontology.owl#,canonical,prefixcc merged.monarch,SCHOLIA.RESOURCE,https://bioregistry.io/metaregistry/scholia/,canonical,bioregistry @@ -15147,6 +15173,7 @@ merged.monarch,test2,http://this.invalid/test2#,canonical,prefixcc merged.monarch,text,http://jena.apache.org/text#,canonical,prefixcc merged.monarch,textgrid,https://textgridrep.org/,canonical,prefixcc merged.monarch,tg,https://triplydb.com/Triply/tg/def/,canonical,prefixcc +merged.monarch,tgc,http://www.hds.utc.fr/tg#,canonical,prefixcc merged.monarch,TGD,http://identifiers.org/tgd/,canonical,go merged.monarch,TGD,http://bio2rdf.org/tgd:,prefix_alias,bioregistry merged.monarch,TGD,http://bioregistry.io/tgd:,prefix_alias,bioregistry @@ -15267,6 +15294,7 @@ merged.monarch,TOPDB,https://n2t.net/topdb:,prefix_alias,bioregistry merged.monarch,TOPDB,https://topdb.enzim.hu/?m=show&id=,prefix_alias,bioregistry merged.monarch,TOPFIND,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged.monarch,topo,http://data.ign.fr/def/topo#,canonical,prefixcc +merged.monarch,tops,http://www.topbraid.org/tops#,canonical,prefixcc merged.monarch,tosh,http://topbraid.org/tosh#,canonical,prefixcc merged.monarch,TOXOPLASMA,http://identifiers.org/toxoplasma/,canonical,bioregistry merged.monarch,TOXOPLASMA,http://bioregistry.io/toxoplasma:,prefix_alias,bioregistry @@ -15331,6 +15359,7 @@ merged.monarch,TREEFAM,https://identifiers.org/treefam:,prefix_alias,bioregistry merged.monarch,TREEFAM,https://n2t.net/treefam:,prefix_alias,bioregistry merged.monarch,TREEFAM,https://www.treefam.org/cgi-bin/TFinfo.pl?ac=,prefix_alias,bioregistry merged.monarch,TREEFAM,https://www.treefam.org/family/,prefix_alias,bioregistry +merged.monarch,TreeGrafter,http://identifiers.org/panther.family/,namespace_alias,go merged.monarch,trek,https://w3id.org/trek/,canonical,prefixcc merged.monarch,TRICDB,http://identifiers.org/tricdb/,canonical,bioregistry merged.monarch,TRICDB,http://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias,bioregistry @@ -16081,6 +16110,7 @@ merged.monarch,va,http://code-research.eu/ontology/visual-analytics#,canonical,p merged.monarch,vacseen1,http://www.semanticweb.org/parthasb/ontologies/2014/6/vacseen1/,canonical,prefixcc merged.monarch,vaem,http://www.linkedmodel.org/schema/vaem#,canonical,prefixcc merged.monarch,vag,http://www.essepuntato.it/2013/10/vagueness/,canonical,prefixcc +merged.monarch,vair,https://w3id.org/vair#,canonical,prefixcc merged.monarch,VALIDATORDB,http://identifiers.org/pdb/,namespace_alias,bioregistry merged.monarch,value,http://gfgfd.vs/,canonical,prefixcc merged.monarch,valueflows,https://w3id.org/valueflows/,canonical,prefixcc diff --git a/src/prefixmaps/data/merged.oak.csv b/src/prefixmaps/data/merged.oak.csv index 966682c..f4aa559 100644 --- a/src/prefixmaps/data/merged.oak.csv +++ b/src/prefixmaps/data/merged.oak.csv @@ -185,6 +185,7 @@ merged.oak,AfPO,http://bioregistry.io/AfPO:,prefix_alias,bioregistry merged.oak,AfPO,https://bioregistry.io/AfPO:,prefix_alias,bioregistry merged.oak,AfPO,https://purl.obolibrary.org/obo/AfPO_,prefix_alias,bioregistry merged.oak,afr,http://purl.allotrope.org/ontologies/result#,canonical,prefixcc +merged.oak,after,http://rds.posccaesar.org/ontology/plm/ds/,canonical,prefixcc merged.oak,AFTOL.TAXONOMY,http://identifiers.org/aftol.taxonomy/,canonical,bioregistry merged.oak,AFTOL.TAXONOMY,http://bioregistry.io/aftol.taxonomy:,prefix_alias,bioregistry merged.oak,AFTOL.TAXONOMY,http://identifiers.org/aftol.taxonomy:,prefix_alias,bioregistry @@ -251,7 +252,9 @@ merged.oak,AIO,https://w3id.org/aio/,canonical,bioregistry merged.oak,AIO,http://bioregistry.io/aio:,prefix_alias,bioregistry merged.oak,AIO,http://w3id.org/aio/,prefix_alias,bioregistry merged.oak,AIO,https://bioregistry.io/aio:,prefix_alias,bioregistry +merged.oak,aio,https://paul.ti.rw.fau.de/~jo00defe/SemWoT/aio#,prefix_alias,prefixcc merged.oak,air,http://dig.csail.mit.edu/TAMI/2007/amord/air#,canonical,prefixcc +merged.oak,airo,https://w3id.org/airo#,canonical,prefixcc merged.oak,airport,http://www.daml.org/2001/10/html/airport-ont#,canonical,prefixcc merged.oak,airs,https://raw.githubusercontent.com/airs-linked-data/lov/latest/src/airs_vocabulary.ttl#,canonical,prefixcc merged.oak,AISM,http://purl.obolibrary.org/obo/AISM_,canonical,obo @@ -319,6 +322,7 @@ merged.oak,AMPHX,https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://pur merged.oak,ams,http://data.amadeus.com/,canonical,prefixcc merged.oak,amsl,http://vocab.ub.uni-leipzig.de/amsl/,canonical,prefixcc merged.oak,amt,http://academic-meta-tool.xyz/vocab#,canonical,prefixcc +merged.oak,amv,https://w3id.org/amv/,canonical,prefixcc merged.oak,anca,http://users.utcluj.ro/~raluca/rdf_ontologies_ralu/ralu_modified_ontology_pizzas2_0#,canonical,prefixcc merged.oak,aneo,http://akonadi-project.org/ontologies/aneo#,canonical,prefixcc merged.oak,ann,http://www.w3.org/2000/10/annotation-ns#,canonical,prefixcc @@ -422,6 +426,7 @@ merged.oak,api,http://purl.org/linked-data/api/vocab#,canonical,prefixcc merged.oak,APID.INTERACTIONS,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged.oak,APIDB_PLASMODB,http://identifiers.org/plasmodb/,namespace_alias,bioregistry merged.oak,apivc,http://purl.org/linked-data/api/vocab#,namespace_alias,prefixcc +merged.oak,apmwg,http://apmwg.ovh/,canonical,prefixcc merged.oak,APO,http://purl.obolibrary.org/obo/APO_,canonical,obo merged.oak,APO,http://bioregistry.io/APO:,prefix_alias,bioregistry merged.oak,APO,http://www.ebi.ac.uk/ols/ontologies/apo/terms?iri=http://purl.obolibrary.org/obo/APO_,prefix_alias,bioregistry @@ -1135,6 +1140,7 @@ merged.oak,BIOMINDER,https://datalab.rwth-aachen.de/MINDER/resource/,prefix_alia merged.oak,BIOMINDER,https://identifiers.org/biominder/,prefix_alias,bioregistry merged.oak,BIOMINDER,https://identifiers.org/biominder:,prefix_alias,bioregistry merged.oak,BIOMINDER,https://n2t.net/biominder:,prefix_alias,bioregistry +merged.oak,biomodels,http://purl.obolibrary.org/obo/KISAO_,namespace_alias,prefixcc merged.oak,BIOMODELS.DB,http://identifiers.org/biomodels.db/,canonical,bioregistry merged.oak,BIOMODELS.DB,http://bio2rdf.org/biomodels:,prefix_alias,bioregistry merged.oak,BIOMODELS.DB,http://biomodels.caltech.edu/,prefix_alias,bioregistry @@ -1422,6 +1428,7 @@ merged.oak,bn,http://babelnet.org/rdf/,canonical,prefixcc merged.oak,bne,http://datos.bne.es/resource/,canonical,prefixcc merged.oak,bner,http://datos.bne.es/resource/,namespace_alias,prefixcc merged.oak,bnf,http://www.w3.org/2000/10/swap/grammar/bnf#,canonical,prefixcc +merged.oak,bng,https://w3id.org/dob/voc/epsg-27700#,canonical,prefixcc merged.oak,bob,http://good.dad/meaning/bob#,canonical,prefixcc merged.oak,BOLD.TAXONOMY,http://identifiers.org/bold.taxonomy/,canonical,bioregistry merged.oak,BOLD.TAXONOMY,http://bio2rdf.org/bold:,prefix_alias,bioregistry @@ -2406,6 +2413,7 @@ merged.oak,CMPO,http://www.ebi.ac.uk/cmpo/CMPO_,canonical,bioregistry merged.oak,CMPO,http://bioregistry.io/cmpo:,prefix_alias,bioregistry merged.oak,CMPO,https://bioregistry.io/cmpo:,prefix_alias,bioregistry merged.oak,CMPO,https://www.ebi.ac.uk/cmpo/CMPO_,prefix_alias,bioregistry +merged.oak,cmso,http://purls.helmholtz-metadaten.de/cmso/,canonical,prefixcc merged.oak,cnt,http://www.w3.org/2011/content#,canonical,prefixcc merged.oak,co,http://purl.org/ontology/co/core#,canonical,prefixcc merged.oak,CO_320,https://cropontology.org/rdf/CO_320:,canonical,bioregistry @@ -2812,6 +2820,7 @@ merged.oak,CPT,http://www.aapc.com/codes/cpt-codes/,prefix_alias,bioregistry merged.oak,CPT,https://bioregistry.io/ama-cpt:,prefix_alias,bioregistry merged.oak,CPT,https://bioregistry.io/cpt:,prefix_alias,bioregistry merged.oak,cpv,http://purl.org/weso/cpv/,canonical,prefixcc +merged.oak,cr,http://mlcommons.org/croissant/,canonical,prefixcc merged.oak,CRAN,https://cran.r-project.org/web/packages/,canonical,bioregistry merged.oak,CRAN,http://CRAN.R-project.org/package=,prefix_alias,bioregistry merged.oak,CRAN,http://bioregistry.io/cran:,prefix_alias,bioregistry @@ -2842,9 +2851,10 @@ merged.oak,CRISPRDB,https://n2t.net/crisprdb:,prefix_alias,bioregistry merged.oak,crm,http://www.cidoc-crm.org/cidoc-crm/,canonical,prefixcc merged.oak,crmdig,http://www.ics.forth.gr/isl/CRMdig/,canonical,prefixcc merged.oak,crmeh,http://purl.org/crmeh#,canonical,prefixcc +merged.oak,crmgeo,http://www.ics.forth.gr/isl/CRMgeo/,canonical,prefixcc merged.oak,crminf,http://www.cidoc-crm.org/cidoc-crm/CRMinf/,canonical,prefixcc merged.oak,crml,http://semweb.mmlab.be/ns/rml/condition#,canonical,prefixcc -merged.oak,crmsci,http://cidoc-crm.org/crmsci/,canonical,prefixcc +merged.oak,crmsci,http://www.cidoc-crm.org/extensions/crmsci/,canonical,prefixcc merged.oak,CRO,http://purl.obolibrary.org/obo/CRO_,canonical,obo merged.oak,CRO,http://bioregistry.io/CRO:,prefix_alias,bioregistry merged.oak,CRO,http://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_,prefix_alias,bioregistry @@ -3542,6 +3552,7 @@ merged.oak,DID,https://identifiers.org/DID:,prefix_alias,bioregistry merged.oak,DID,https://identifiers.org/did/did:,prefix_alias,bioregistry merged.oak,DID,https://n2t.net/did:,prefix_alias,bioregistry merged.oak,DID,https://uniresolver.io/#did:,prefix_alias,bioregistry +merged.oak,did,https://w3id.org/dob/id/,prefix_alias,prefixcc merged.oak,DIDEO,http://purl.obolibrary.org/obo/DIDEO_,canonical,obo merged.oak,DIDEO,http://bioregistry.io/DIDEO:,prefix_alias,bioregistry merged.oak,DIDEO,http://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_,prefix_alias,bioregistry @@ -3648,6 +3659,7 @@ merged.oak,doap,http://bioregistry.io/doap:,prefix_alias,bioregistry merged.oak,doap,https://bioregistry.io/doap:,prefix_alias,bioregistry merged.oak,doap,https://usefulinc.com/ns/doap#,prefix_alias,bioregistry merged.oak,doas,http://deductions.github.io/doas.owl.ttl#,canonical,prefixcc +merged.oak,dob,https://w3id.org/dob/voc#,canonical,prefixcc merged.oak,doc,http://www.w3.org/2000/10/swap/pim/doc#,canonical,prefixcc merged.oak,docam,https://www.docam.ca/glossaurus/,canonical,prefixcc merged.oak,docbook,http://docbook.org/ns/docbook/,canonical,prefixcc @@ -3732,6 +3744,7 @@ merged.oak,DOOR,https://identifiers.org/door/,prefix_alias,bioregistry merged.oak,DOOR,https://identifiers.org/door:,prefix_alias,bioregistry merged.oak,DOOR,https://n2t.net/door:,prefix_alias,bioregistry merged.oak,door,http://kannel.open.ac.uk/ontology#,prefix_alias,prefixcc +merged.oak,dop,https://w3id.org/dob/voc/prop#,canonical,prefixcc merged.oak,DOQCS.MODEL,http://identifiers.org/doqcs.model/,canonical,bioregistry merged.oak,DOQCS.MODEL,http://bio2rdf.org/doqcs.model:,prefix_alias,bioregistry merged.oak,DOQCS.MODEL,http://bioregistry.io/doqcs.model:,prefix_alias,bioregistry @@ -4156,6 +4169,7 @@ merged.oak,ecoll,http://purl.org/ceu/eco/1.0#,canonical,prefixcc merged.oak,ecore,http://www.eclipse.org/emf/2002/Ecore#,canonical,prefixcc merged.oak,ecos,http://purl.org/ecos#,canonical,prefixcc merged.oak,ecowlim,http://ecowlim.tfri.gov.tw/lode/resource/,canonical,prefixcc +merged.oak,ecp,http://www.ebu.ch/metadata/ontologies/ebucoreplus#,canonical,prefixcc merged.oak,ecpo,http://purl.org/ontology/ecpo#,canonical,prefixcc merged.oak,ecrm,http://erlangen-crm.org/current/,canonical,prefixcc merged.oak,ecs,http://rdf.ecs.soton.ac.uk/ontology/ecs#,canonical,prefixcc @@ -4250,6 +4264,7 @@ merged.oak,edgarcik,http://edgarwrap.ontologycentral.com/cik/,canonical,prefixcc merged.oak,edm,http://www.europeana.eu/schemas/edm/,canonical,prefixcc merged.oak,edo,http://semanticweb.org/edo#,canonical,prefixcc merged.oak,edr,https://w3id.org/laas-iot/edr#,canonical,prefixcc +merged.oak,edtf,http://id.loc.gov/datatypes/EDTFScheme/,canonical,prefixcc merged.oak,edu,https://schema.edu.ee/,canonical,prefixcc merged.oak,edupro,http://ns.inria.fr/semed/eduprogression#,canonical,prefixcc merged.oak,eem,http://purl.org/eem#,canonical,prefixcc @@ -5598,7 +5613,7 @@ merged.oak,GIARDIADB,https://giardiadb.org/giardiadb/showRecord.do?name=GeneReco merged.oak,GIARDIADB,https://identifiers.org/giardiadb/,prefix_alias,bioregistry merged.oak,GIARDIADB,https://identifiers.org/giardiadb:,prefix_alias,bioregistry merged.oak,GIARDIADB,https://n2t.net/giardiadb:,prefix_alias,bioregistry -merged.oak,gist,https://ontologies.semanticarts.com/o/gistCore#,canonical,prefixcc +merged.oak,gist,http://ontologies.semanticarts.com/gist#,canonical,prefixcc merged.oak,GITHUB,http://identifiers.org/github/,canonical,bioregistry merged.oak,GITHUB,http://bioregistry.io/github:,prefix_alias,bioregistry merged.oak,GITHUB,http://github.com/,prefix_alias,bioregistry @@ -5881,6 +5896,7 @@ merged.oak,GO.RESOURCE,https://bioregistry.io/metaregistry/go/,canonical,bioregi merged.oak,GO.RESOURCE,http://bioregistry.io/go.resource:,prefix_alias,bioregistry merged.oak,GO.RESOURCE,http://bioregistry.io/metaregistry/go/,prefix_alias,bioregistry merged.oak,GO.RESOURCE,https://bioregistry.io/go.resource:,prefix_alias,bioregistry +merged.oak,GO_REF,http://purl.obolibrary.org/obo/go/references/,canonical,go merged.oak,GOA,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged.oak,goaf,http://goaf.fr/goaf#,canonical,prefixcc merged.oak,goavoc,http://bio2rdf.org/goa_vocabulary:,canonical,prefixcc @@ -6138,7 +6154,7 @@ merged.oak,GRSDB,https://bioregistry.io/grsdb:,prefix_alias,bioregistry merged.oak,GRSDB,https://identifiers.org/grsdb/,prefix_alias,bioregistry merged.oak,GRSDB,https://identifiers.org/grsdb:,prefix_alias,bioregistry merged.oak,GRSDB,https://n2t.net/grsdb:,prefix_alias,bioregistry -merged.oak,gs1,http://gs1.org/voc/,canonical,prefixcc +merged.oak,gs1,https://ref.gs1.org/voc/,canonical,prefixcc merged.oak,gso,http://www.w3.org/2006/gen/ont#,canonical,prefixcc merged.oak,gsp,http://www.opengis.net/ont/geosparql#,namespace_alias,prefixcc merged.oak,GSSO,http://purl.obolibrary.org/obo/GSSO_,canonical,obo @@ -7885,6 +7901,7 @@ merged.oak,kpd,http://purl.org/kpd/,canonical,prefixcc merged.oak,ksam,http://kulturarvsdata.se/ksamsok#,namespace_alias,prefixcc merged.oak,ksamsok,http://kulturarvsdata.se/ksamsok#,namespace_alias,prefixcc merged.oak,kupkb,http://www.e-lico.eu/data/kupkb/,canonical,prefixcc +merged.oak,kvasir,https://kvasir.discover.ilabt.imec.be/vocab#,canonical,prefixcc merged.oak,kw,http://kwantu.net/kw/,canonical,prefixcc merged.oak,kwijibo,http://kwijibo.talis.com/,canonical,prefixcc merged.oak,l2sp,http://www.linked2safety-project.eu/properties/,canonical,prefixcc @@ -8130,6 +8147,7 @@ merged.oak,linkml,http://w3id.org/linkml/,prefix_alias,bioregistry merged.oak,linkml,https://bioregistry.io/linkml:,prefix_alias,bioregistry merged.oak,linkrel,https://www.w3.org/ns/iana/link-relations/relation#,namespace_alias,prefixcc merged.oak,lio,http://purl.org/net/lio#,canonical,prefixcc +merged.oak,liph,https://gallosiciliani.unict.it/ns/lpont#,canonical,prefixcc merged.oak,LIPID MAPS,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry merged.oak,LIPID_MAPS_CLASS,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry merged.oak,LIPID_MAPS_INSTANCE,http://identifiers.org/lipidmaps/,namespace_alias,bioregistry @@ -8354,6 +8372,7 @@ merged.oak,MAGGOT,https://identifiers.org/maggot:,prefix_alias,bioregistry merged.oak,MAGGOT,https://pmb-bordeaux.fr/maggot/metadata/,prefix_alias,bioregistry merged.oak,magmardl,http://www.semanticweb.org/magma-core/rdl#,canonical,prefixcc merged.oak,magmauser,http://www.semanticweb.org/magma-core/user#,canonical,prefixcc +merged.oak,maid,https://mutual-aid.app/ns/core#,canonical,prefixcc merged.oak,MAIZEGDB,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry merged.oak,MAIZEGDB.LOCUS,http://bio2rdf.org/maizegdb:,prefix_alias,bioregistry merged.oak,MAIZEGDB.LOCUS,http://bioregistry.io/MaizeGDB:,prefix_alias,bioregistry @@ -8374,6 +8393,7 @@ merged.oak,MAIZEGDB.LOCUS,https://www.maizegdb.org/data_center/gene_product?id=, merged.oak,MAIZEGDB.LOCUS,https://www.maizegdb.org/gene_center/gene/,prefix_alias,bioregistry merged.oak,MAIZEGDB.LOCUS,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry merged.oak,MaizeGDB_Locus,http://identifiers.org/maizegdb.locus/,canonical,go +merged.oak,makeup,http://example.org/makeup#,canonical,prefixcc merged.oak,malaka,http://george.gr/,canonical,prefixcc merged.oak,malignneo,http://www.agfa.com/w3c/2009/malignantNeoplasm#,canonical,prefixcc merged.oak,mammal,http://lod.taxonconcept.org/ontology/p01/Mammalia/index.owl#,canonical,prefixcc @@ -8573,6 +8593,7 @@ merged.oak,MEDLINEPLUS,https://identifiers.org/medlineplus:,prefix_alias,bioregi merged.oak,MEDLINEPLUS,https://n2t.net/medlineplus:,prefix_alias,bioregistry merged.oak,MEDRA,http://identifiers.org/meddra/,namespace_alias,bioregistry merged.oak,medred,http://w3id.org/medred/medred#,canonical,prefixcc +merged.oak,mee,http://www.w3.org/ns/pim/meeting#,canonical,prefixcc merged.oak,meeting,http://www.w3.org/2002/07/meeting#,canonical,prefixcc merged.oak,meetup,http://www.lotico.com/meetup/,canonical,prefixcc merged.oak,mei,http://www.music-encoding.org/ns/mei/,canonical,prefixcc @@ -9670,6 +9691,7 @@ merged.oak,MZSPEC,https://identifiers.org/mzspec/mzspec:,prefix_alias,bioregistr merged.oak,MZSPEC,https://n2t.net/mzspec:,prefix_alias,bioregistry merged.oak,MZSPEC,https://proteomecentral.proteomexchange.org/usi/?usi=mzspec:,prefix_alias,bioregistry merged.oak,MZSPEC,https://www.ebi.ac.uk/pride/archive/usi?usi=mzspec:,prefix_alias,bioregistry +merged.oak,nace2,http://data.europa.eu/ux2/nace2/,canonical,prefixcc merged.oak,nalt,https://lod.nal.usda.gov/nalt/,canonical,prefixcc merged.oak,name,http://example.org/name#,canonical,prefixcc merged.oak,namespaces,https://vg.no/,canonical,prefixcc @@ -11092,6 +11114,7 @@ merged.oak,OPENWEMI,https://dcmi.github.io/openwemi/ns#,canonical,bioregistry merged.oak,OPENWEMI,http://bioregistry.io/openwemi:,prefix_alias,bioregistry merged.oak,OPENWEMI,http://dcmi.github.io/openwemi/ns#,prefix_alias,bioregistry merged.oak,OPENWEMI,https://bioregistry.io/openwemi:,prefix_alias,bioregistry +merged.oak,openwemi,https://ns.dublincore.org/openwemi/,prefix_alias,prefixcc merged.oak,oper,http://sweet.jpl.nasa.gov/2.0/mathOperation.owl#,canonical,prefixcc merged.oak,OPL,http://purl.obolibrary.org/obo/OPL_,canonical,obo merged.oak,OPL,http://bioregistry.io/OPL:,prefix_alias,bioregistry @@ -11579,8 +11602,8 @@ merged.oak,PAXDB.PROTEIN,https://identifiers.org/paxdb.protein/,prefix_alias,bio merged.oak,PAXDB.PROTEIN,https://identifiers.org/paxdb.protein:,prefix_alias,bioregistry merged.oak,PAXDB.PROTEIN,https://n2t.net/paxdb.protein:,prefix_alias,bioregistry merged.oak,PAXDB.PROTEIN,https://pax-db.org/#!protein/,prefix_alias,bioregistry -merged.oak,pay,http://reference.data.gov.uk/def/payment#,namespace_alias,prefixcc -merged.oak,payment,http://reference.data.gov.uk/def/payment#,canonical,prefixcc +merged.oak,pay,http://reference.data.gov.uk/def/payment#,canonical,prefixcc +merged.oak,payment,http://reference.data.gov.uk/def/payment#,namespace_alias,prefixcc merged.oak,PAZAR,http://identifiers.org/pazar/,canonical,bioregistry merged.oak,PAZAR,http://bio2rdf.org/pazar:,prefix_alias,bioregistry merged.oak,PAZAR,http://bioregistry.io/pazar:,prefix_alias,bioregistry @@ -12245,7 +12268,7 @@ merged.oak,PMDB,https://identifiers.org/pmdb:,prefix_alias,bioregistry merged.oak,PMDB,https://mi.caspur.it/PMDB/user/search.php?idsearch=,prefix_alias,bioregistry merged.oak,PMDB,https://n2t.net/pmdb:,prefix_alias,bioregistry merged.oak,pmhb,http://pmhb.org/,canonical,prefixcc -merged.oak,PMID,http://identifiers.org/pubmed/,namespace_alias,bioregistry +merged.oak,PMID,http://identifiers.org/pubmed/,canonical,go merged.oak,pml,http://provenanceweb.org/ns/pml#,canonical,prefixcc merged.oak,pmlj,http://inference-web.org/2.0/pml-justification.owl#,canonical,prefixcc merged.oak,pmlp,http://inference-web.org/2.0/pml-provenance.owl#,canonical,prefixcc @@ -12661,6 +12684,7 @@ merged.oak,PSIPAR,https://identifiers.org/psipar:,prefix_alias,bioregistry merged.oak,PSIPAR,https://n2t.net/psipar:,prefix_alias,bioregistry merged.oak,PSIPAR,https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:,prefix_alias,bioregistry merged.oak,psm,https://paul.ti.rw.fau.de/~jo00defe/ont/psm#,canonical,prefixcc +merged.oak,psn,https://purl.org/psn/vocab#,canonical,prefixcc merged.oak,PSO,http://purl.obolibrary.org/obo/PSO_,canonical,obo merged.oak,PSO,http://bioregistry.io/PSO:,prefix_alias,bioregistry merged.oak,PSO,http://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_,prefix_alias,bioregistry @@ -12768,7 +12792,6 @@ merged.oak,PUBLONS.RESEARCHER,https://publons.com/researcher/,canonical,bioregis merged.oak,PUBLONS.RESEARCHER,http://bioregistry.io/publons.researcher:,prefix_alias,bioregistry merged.oak,PUBLONS.RESEARCHER,http://publons.com/researcher/,prefix_alias,bioregistry merged.oak,PUBLONS.RESEARCHER,https://bioregistry.io/publons.researcher:,prefix_alias,bioregistry -merged.oak,PUBMED,http://identifiers.org/pubmed/,canonical,bioregistry merged.oak,PUBMED,http://bio2rdf.org/pubmed:,prefix_alias,bioregistry merged.oak,PUBMED,http://bioregistry.io/MEDLINE:,prefix_alias,bioregistry merged.oak,PUBMED,http://bioregistry.io/PMID:,prefix_alias,bioregistry @@ -12801,6 +12824,7 @@ merged.oak,PUBMED,https://scholia.toolforge.org/pubmed/,prefix_alias,bioregistry merged.oak,PUBMED,https://www.hubmed.org/display.cgi?uids=,prefix_alias,bioregistry merged.oak,PUBMED,https://www.ncbi.nlm.nih.gov/pubmed/,prefix_alias,bioregistry merged.oak,pubmed,http://bio2rdf.org/pubmed_vocabulary:,prefix_alias,prefixcc +merged.oak,PUBMED,http://identifiers.org/pubmed/,namespace_alias,bioregistry merged.oak,puc,http://purl.org/NET/puc#,canonical,prefixcc merged.oak,puelia,http://kwijibo.talis.com/vocabs/puelia#,canonical,prefixcc merged.oak,puml,http://plantuml.com/ontology#,canonical,prefixcc @@ -13121,6 +13145,7 @@ merged.oak,RDFA,https://www.w3.org/ns/rdfa#,prefix_alias,bioregistry merged.oak,rdfdata,http://rdf.data-vocabulary.org/rdf.xml#,canonical,prefixcc merged.oak,rdfdf,http://www.openlinksw.com/virtrdf-data-formats#,canonical,prefixcc merged.oak,rdfg,http://www.w3.org/2004/03/trix/rdfg-1/,canonical,prefixcc +merged.oak,rdfl,https://w3id.org/rdf-lens/ontology#,canonical,prefixcc merged.oak,rdfp,https://w3id.org/rdfp/,canonical,prefixcc merged.oak,rdfs,http://www.w3.org/2000/01/rdf-schema#,canonical,linkml merged.oak,rdfs,http://bioregistry.io/rdfs:,prefix_alias,bioregistry @@ -13754,6 +13779,7 @@ merged.oak,schema,http://bioregistry.io/schemaorg:,prefix_alias,bioregistry merged.oak,schema,https://bioregistry.io/schema:,prefix_alias,bioregistry merged.oak,schema,https://bioregistry.io/schemaorg:,prefix_alias,bioregistry merged.oak,schemaorg,https://schema.org/,namespace_alias,bioregistry +merged.oak,schemas,https://schema.org/,namespace_alias,prefixcc merged.oak,scho,http://www.scholarlydata.org/ontology/conference-ontology.owl#,canonical,prefixcc merged.oak,schoi,https://w3id.org/scholarlydata/ontology/indicators-ontology.owl#,canonical,prefixcc merged.oak,SCHOLIA.RESOURCE,https://bioregistry.io/metaregistry/scholia/,canonical,bioregistry @@ -15147,6 +15173,7 @@ merged.oak,test2,http://this.invalid/test2#,canonical,prefixcc merged.oak,text,http://jena.apache.org/text#,canonical,prefixcc merged.oak,textgrid,https://textgridrep.org/,canonical,prefixcc merged.oak,tg,https://triplydb.com/Triply/tg/def/,canonical,prefixcc +merged.oak,tgc,http://www.hds.utc.fr/tg#,canonical,prefixcc merged.oak,TGD,http://identifiers.org/tgd/,canonical,go merged.oak,TGD,http://bio2rdf.org/tgd:,prefix_alias,bioregistry merged.oak,TGD,http://bioregistry.io/tgd:,prefix_alias,bioregistry @@ -15267,6 +15294,7 @@ merged.oak,TOPDB,https://n2t.net/topdb:,prefix_alias,bioregistry merged.oak,TOPDB,https://topdb.enzim.hu/?m=show&id=,prefix_alias,bioregistry merged.oak,TOPFIND,http://identifiers.org/uniprot/,namespace_alias,bioregistry merged.oak,topo,http://data.ign.fr/def/topo#,canonical,prefixcc +merged.oak,tops,http://www.topbraid.org/tops#,canonical,prefixcc merged.oak,tosh,http://topbraid.org/tosh#,canonical,prefixcc merged.oak,TOXOPLASMA,http://identifiers.org/toxoplasma/,canonical,bioregistry merged.oak,TOXOPLASMA,http://bioregistry.io/toxoplasma:,prefix_alias,bioregistry @@ -15331,6 +15359,7 @@ merged.oak,TREEFAM,https://identifiers.org/treefam:,prefix_alias,bioregistry merged.oak,TREEFAM,https://n2t.net/treefam:,prefix_alias,bioregistry merged.oak,TREEFAM,https://www.treefam.org/cgi-bin/TFinfo.pl?ac=,prefix_alias,bioregistry merged.oak,TREEFAM,https://www.treefam.org/family/,prefix_alias,bioregistry +merged.oak,TreeGrafter,http://identifiers.org/panther.family/,namespace_alias,go merged.oak,trek,https://w3id.org/trek/,canonical,prefixcc merged.oak,TRICDB,http://identifiers.org/tricdb/,canonical,bioregistry merged.oak,TRICDB,http://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias,bioregistry @@ -16081,6 +16110,7 @@ merged.oak,va,http://code-research.eu/ontology/visual-analytics#,canonical,prefi merged.oak,vacseen1,http://www.semanticweb.org/parthasb/ontologies/2014/6/vacseen1/,canonical,prefixcc merged.oak,vaem,http://www.linkedmodel.org/schema/vaem#,canonical,prefixcc merged.oak,vag,http://www.essepuntato.it/2013/10/vagueness/,canonical,prefixcc +merged.oak,vair,https://w3id.org/vair#,canonical,prefixcc merged.oak,VALIDATORDB,http://identifiers.org/pdb/,namespace_alias,bioregistry merged.oak,value,http://gfgfd.vs/,canonical,prefixcc merged.oak,valueflows,https://w3id.org/valueflows/,canonical,prefixcc diff --git a/src/prefixmaps/data/prefixcc.csv b/src/prefixmaps/data/prefixcc.csv index 0232968..8d04078 100644 --- a/src/prefixmaps/data/prefixcc.csv +++ b/src/prefixmaps/data/prefixcc.csv @@ -29,6 +29,7 @@ prefixcc,adr,http://kg.artsdata.ca/resource/,canonical prefixcc,adw,https://animaldiversity.org/accounts/,canonical prefixcc,aec3po,https://w3id.org/lbd/aec3po/,canonical prefixcc,aeo,http://purl.obolibrary.org/obo/AEO_,canonical +prefixcc,aero,http://purl.obolibrary.org/obo/AERO_,canonical prefixcc,aerols,http://xmlns.com/aerols/0.1/,canonical prefixcc,aers,http://aers.data2semantics.org/resource/,canonical prefixcc,aersv,http://aers.data2semantics.org/vocab/,canonical @@ -40,6 +41,7 @@ prefixcc,afm,http://purl.allotrope.org/ontologies/material/,canonical prefixcc,afn,http://jena.apache.org/ARQ/function#,canonical prefixcc,afpo,http://purl.obolibrary.org/obo/AfPO_,canonical prefixcc,afr,http://purl.allotrope.org/ontologies/result#,canonical +prefixcc,after,http://rds.posccaesar.org/ontology/plm/ds/,canonical prefixcc,agent,http://eulersharp.sourceforge.net/2003/03swap/agent#,canonical prefixcc,agents,http://eulersharp.sourceforge.net/2003/03swap/agent#,namespace_alias prefixcc,agetec,http://www.agetec.org/,canonical @@ -57,7 +59,9 @@ prefixcc,aigp,http://swat.cse.lehigh.edu/resources/onto/aigp.owl#,canonical prefixcc,aiiso,http://purl.org/vocab/aiiso/schema#,canonical prefixcc,aimaix,https://w3id.org/aimaix#,canonical prefixcc,aims,http://aims.fao.org/aos/common/,canonical +prefixcc,aio,https://paul.ti.rw.fau.de/~jo00defe/SemWoT/aio#,canonical prefixcc,air,http://dig.csail.mit.edu/TAMI/2007/amord/air#,canonical +prefixcc,airo,https://w3id.org/airo#,canonical prefixcc,airport,http://www.daml.org/2001/10/html/airport-ont#,canonical prefixcc,airs,https://raw.githubusercontent.com/airs-linked-data/lov/latest/src/airs_vocabulary.ttl#,canonical prefixcc,aism,http://purl.obolibrary.org/obo/AISM_,canonical @@ -81,6 +85,7 @@ prefixcc,amphx,http://purl.obolibrary.org/obo/AMPHX_,canonical prefixcc,ams,http://data.amadeus.com/,canonical prefixcc,amsl,http://vocab.ub.uni-leipzig.de/amsl/,canonical prefixcc,amt,http://academic-meta-tool.xyz/vocab#,canonical +prefixcc,amv,https://w3id.org/amv/,canonical prefixcc,anca,http://users.utcluj.ro/~raluca/rdf_ontologies_ralu/ralu_modified_ontology_pizzas2_0#,canonical prefixcc,aneo,http://akonadi-project.org/ontologies/aneo#,canonical prefixcc,ann,http://www.w3.org/2000/10/annotation-ns#,canonical @@ -92,6 +97,7 @@ prefixcc,apb,http://www.analysispartners.org/businessmodel/,canonical prefixcc,apf,http://jena.apache.org/ARQ/property#,canonical prefixcc,api,http://purl.org/linked-data/api/vocab#,canonical prefixcc,apivc,http://purl.org/linked-data/api/vocab#,namespace_alias +prefixcc,apmwg,http://apmwg.ovh/,canonical prefixcc,apo,http://purl.obolibrary.org/obo/APO_,canonical prefixcc,apods,http://activitypods.org/ns/core#,canonical prefixcc,apollosv,http://purl.obolibrary.org/obo/APOLLO_SV_,canonical @@ -211,6 +217,7 @@ prefixcc,bioentity,http://bioentity.io/vocab/,canonical prefixcc,biogrid,http://thebiogrid.org/,canonical prefixcc,biol,http://purl.org/NET/biol/ns#,canonical prefixcc,biolink,https://w3id.org/biolink/vocab/,namespace_alias +prefixcc,biomodels,http://purl.obolibrary.org/obo/KISAO_,canonical prefixcc,biopax,http://www.biopax.org/release/biopax-level3.owl#,canonical prefixcc,biordf,http://purl.org/net/biordfmicroarray/ns#,canonical prefixcc,bioschemas,https://bioschemas.org/,canonical @@ -235,6 +242,7 @@ prefixcc,bn,http://babelnet.org/rdf/,canonical prefixcc,bne,http://datos.bne.es/resource/,canonical prefixcc,bner,http://datos.bne.es/resource/,namespace_alias prefixcc,bnf,http://www.w3.org/2000/10/swap/grammar/bnf#,canonical +prefixcc,bng,https://w3id.org/dob/voc/epsg-27700#,canonical prefixcc,bob,http://good.dad/meaning/bob#,canonical prefixcc,book,http://purl.org/NET/book/vocab#,canonical prefixcc,bookmark,http://www.w3.org/2002/01/bookmark#,canonical @@ -339,6 +347,7 @@ prefixcc,chems,https://w3id.org/emmo/domain/chemical-substance#,canonical prefixcc,chemsci,https://w3id.org/skgo/chemsci#,canonical prefixcc,chess,http://purl.org/NET/rdfchess/ontology/,canonical prefixcc,chiro,http://purl.obolibrary.org/obo/CHIRO_,canonical +prefixcc,chmo,http://purl.obolibrary.org/obo/CHMO_,canonical prefixcc,chord,http://purl.org/ontology/chord/,canonical prefixcc,chpaf,https://ch.paf.link/,canonical prefixcc,ci,https://privatealpha.com/ontology/content-inventory/1#,canonical @@ -370,8 +379,10 @@ prefixcc,clyh,http://purl.obolibrary.org/obo/ZP_,namespace_alias prefixcc,cmd,https://w3id.org/cmd#,canonical prefixcc,cmdi,http://www.clarin.eu/cmd/,canonical prefixcc,cmdm,http://infra.clarin.eu/cmd/,canonical +prefixcc,cmf,http://purl.obolibrary.org/obo/CMF_,canonical prefixcc,cmo,http://purl.org/twc/ontologies/cmo.owl#,canonical prefixcc,cmp,http://www.ontologydesignpatterns.org/cp/owl/componency.owl#,canonical +prefixcc,cmso,http://purls.helmholtz-metadaten.de/cmso/,canonical prefixcc,cnt,http://www.w3.org/2011/content#,canonical prefixcc,co,http://purl.org/ontology/co/core#,canonical prefixcc,cob,http://purl.obolibrary.org/obo/COB_,canonical @@ -441,6 +452,7 @@ prefixcc,cpov,http://data.europa.eu/m8g/,canonical prefixcc,cpsv,http://purl.org/vocab/cpsv#,canonical prefixcc,cpsvno,http://data.norge.no/vocabulary/cpsvno#,canonical prefixcc,cpv,http://purl.org/weso/cpv/,canonical +prefixcc,cr,http://mlcommons.org/croissant/,canonical prefixcc,crcr,https://credit.niso.org/contributor-roles/,canonical prefixcc,cred,https://www.w3.org/2018/credentials#,canonical prefixcc,credit,https://credit.niso.org/,canonical @@ -448,9 +460,10 @@ prefixcc,crime,http://purl.org/vocab/reloc/,canonical prefixcc,crm,http://www.cidoc-crm.org/cidoc-crm/,canonical prefixcc,crmdig,http://www.ics.forth.gr/isl/CRMdig/,canonical prefixcc,crmeh,http://purl.org/crmeh#,canonical +prefixcc,crmgeo,http://www.ics.forth.gr/isl/CRMgeo/,canonical prefixcc,crminf,http://www.cidoc-crm.org/cidoc-crm/CRMinf/,canonical prefixcc,crml,http://semweb.mmlab.be/ns/rml/condition#,canonical -prefixcc,crmsci,http://cidoc-crm.org/crmsci/,canonical +prefixcc,crmsci,http://www.cidoc-crm.org/extensions/crmsci/,canonical prefixcc,cro,http://rhizomik.net/ontologies/copyrightonto.owl#,canonical prefixcc,crowd,http://purl.org/crowd/,canonical prefixcc,crsw,http://courseware.rkbexplorer.com/ontologies/courseware#,namespace_alias @@ -615,8 +628,9 @@ prefixcc,diag,http://www.loc.gov/zing/srw/diagnostic/,canonical prefixcc,dicera,http://semweb.mmlab.be/ns/dicera#,canonical prefixcc,dick,http://pornhub.com/,namespace_alias prefixcc,dicom,http://purl.org/healthcarevocab/v1#,canonical +prefixcc,did,https://w3id.org/dob/id/,canonical prefixcc,dideo,http://purl.obolibrary.org/obo/DIDEO_,canonical -prefixcc,dinto,http://purl.obolibrary.org/obo/ZP_,canonical +prefixcc,dinto,http://purl.obolibrary.org/obo/ZP_,namespace_alias prefixcc,dio,https://w3id.org/dio#,canonical prefixcc,dir,http://schemas.talis.com/2005/dir/schema#,canonical prefixcc,dis,http://stanbol.apache.org/ontology/disambiguation/disambiguation#,canonical @@ -643,6 +657,7 @@ prefixcc,doacc,http://purl.org/net/bel-epa/doacc#,canonical prefixcc,doam,http://emmo.info/doam#,canonical prefixcc,doap,http://usefulinc.com/ns/doap#,canonical prefixcc,doas,http://deductions.github.io/doas.owl.ttl#,canonical +prefixcc,dob,https://w3id.org/dob/voc#,canonical prefixcc,doc,http://www.w3.org/2000/10/swap/pim/doc#,canonical prefixcc,docam,https://www.docam.ca/glossaurus/,canonical prefixcc,docbook,http://docbook.org/ns/docbook/,canonical @@ -656,6 +671,7 @@ prefixcc,doid,http://purl.obolibrary.org/obo/DOID_,canonical prefixcc,dom,https://html.spec.whatwg.org/#,canonical prefixcc,donto,http://reference.data.gov.au/def/ont/dataset#,canonical prefixcc,door,http://kannel.open.ac.uk/ontology#,canonical +prefixcc,dop,https://w3id.org/dob/voc/prop#,canonical prefixcc,dossier,https://data.omgeving.vlaanderen.be/ns/dossier#,canonical prefixcc,dot,https://w3id.org/dot#,canonical prefixcc,dpc,http://hospee.org/ontologies/dpc/,canonical @@ -730,6 +746,7 @@ prefixcc,ecoll,http://purl.org/ceu/eco/1.0#,canonical prefixcc,ecore,http://www.eclipse.org/emf/2002/Ecore#,canonical prefixcc,ecos,http://purl.org/ecos#,canonical prefixcc,ecowlim,http://ecowlim.tfri.gov.tw/lode/resource/,canonical +prefixcc,ecp,http://www.ebu.ch/metadata/ontologies/ebucoreplus#,canonical prefixcc,ecpo,http://purl.org/ontology/ecpo#,canonical prefixcc,ecrm,http://erlangen-crm.org/current/,canonical prefixcc,ecs,http://rdf.ecs.soton.ac.uk/ontology/ecs#,canonical @@ -742,6 +759,7 @@ prefixcc,edgarcik,http://edgarwrap.ontologycentral.com/cik/,canonical prefixcc,edm,http://www.europeana.eu/schemas/edm/,canonical prefixcc,edo,http://semanticweb.org/edo#,canonical prefixcc,edr,https://w3id.org/laas-iot/edr#,canonical +prefixcc,edtf,http://id.loc.gov/datatypes/EDTFScheme/,canonical prefixcc,edu,https://schema.edu.ee/,canonical prefixcc,edupro,http://ns.inria.fr/semed/eduprogression#,canonical prefixcc,eem,http://purl.org/eem#,canonical @@ -779,7 +797,7 @@ prefixcc,enhancer,http://stanbol.apache.org/ontology/enhancer/enhancer#,canonica prefixcc,ens,http://models.okkam.org/ENS-core-vocabulary.owl#,canonical prefixcc,ensembl,http://rdf.ebi.ac.uk/resource/ensembl/,canonical prefixcc,environ,http://eulersharp.sourceforge.net/2003/03swap/environment#,canonical -prefixcc,envo,http://purl.obolibrary.org/obo/ZP_,namespace_alias +prefixcc,envo,http://purl.obolibrary.org/obo/ZP_,canonical prefixcc,eo,http://purl.obolibrary.org/obo/EO_,canonical prefixcc,eol,http://purl.org/biodiversity/eol/,canonical prefixcc,ep,http://eprints.org/ontology/,namespace_alias @@ -894,6 +912,7 @@ prefixcc,fernanda,http://fernanda.nl/,canonical prefixcc,fhir,http://hl7.org/fhir/,canonical prefixcc,fiaf,https://ontology.fiafcore.org/,canonical prefixcc,fibo,https://spec.edmcouncil.org/fibo/ontology/master/latest/,canonical +prefixcc,fideo,http://purl.obolibrary.org/obo/FIDEO_,canonical prefixcc,figigii,http://www.omg.org/spec/FIGI/GlobalInstrumentIdentifiers/,canonical prefixcc,film,http://semantics.id/ns/example/film/,canonical prefixcc,fincaselaw,http://purl.org/finlex/schema/oikeus/,canonical @@ -1030,7 +1049,7 @@ prefixcc,gfo,http://www.onto-med.de/ontologies/gfo.owl#,canonical prefixcc,gg,http://www.gemeentegeschiedenis.nl/gg-schema#,canonical prefixcc,ggbn,http://data.ggbn.org/schemas/ggbn/terms/,canonical prefixcc,ghga,http://w3id.org/ghga/,canonical -prefixcc,gist,https://ontologies.semanticarts.com/o/gistCore#,canonical +prefixcc,gist,http://ontologies.semanticarts.com/gist#,canonical prefixcc,giving,http://ontologi.es/giving#,canonical prefixcc,gl,http://schema.geolink.org/,canonical prefixcc,gldp,http://www.w3.org/ns/people#,canonical @@ -1076,9 +1095,10 @@ prefixcc,grel,http://users.ugent.be/~bjdmeest/function/grel.ttl#,canonical prefixcc,gridworks,http://purl.org/net/opmv/types/gridworks#,canonical prefixcc,grs,http://www.georss.org/georss/,namespace_alias prefixcc,grscicoll,https://www.gbif.org/grscicoll/collection/,canonical -prefixcc,gs1,http://gs1.org/voc/,canonical +prefixcc,gs1,https://ref.gs1.org/voc/,canonical prefixcc,gso,http://www.w3.org/2006/gen/ont#,canonical prefixcc,gsp,http://www.opengis.net/ont/geosparql#,namespace_alias +prefixcc,gsso,http://purl.obolibrary.org/obo/GSSO_,canonical prefixcc,gt,https://vocab.eccenca.com/geniustex/,canonical prefixcc,gtfs,http://vocab.gtfs.org/terms#,canonical prefixcc,gtm,https://www.goudatijdmachine.nl/def/,canonical @@ -1217,7 +1237,7 @@ prefixcc,ino,http://purl.obolibrary.org/obo/INO_,canonical prefixcc,input,http://volt-name.space/vocab/input#,canonical prefixcc,insdc,http://ddbj.nig.ac.jp/ontologies/sequence#,canonical prefixcc,interop,http://www.w3.org/ns/solid/interop#,canonical -prefixcc,interpro,http://purl.obolibrary.org/obo/IPR_,canonical +prefixcc,interpro,https://www.ebi.ac.uk/interpro/entry/InterPro/,canonical prefixcc,interval,http://reference.data.gov.uk/def/intervals/,canonical prefixcc,intervals,http://reference.data.gov.uk/def/intervals/,namespace_alias prefixcc,into,https://app.korfin.de/ontology/into/,canonical @@ -1312,6 +1332,7 @@ prefixcc,kpd,http://purl.org/kpd/,canonical prefixcc,ksam,http://kulturarvsdata.se/ksamsok#,namespace_alias prefixcc,ksamsok,http://kulturarvsdata.se/ksamsok#,namespace_alias prefixcc,kupkb,http://www.e-lico.eu/data/kupkb/,canonical +prefixcc,kvasir,https://kvasir.discover.ilabt.imec.be/vocab#,canonical prefixcc,kw,http://kwantu.net/kw/,canonical prefixcc,kwijibo,http://kwijibo.talis.com/,canonical prefixcc,l2sp,http://www.linked2safety-project.eu/properties/,canonical @@ -1320,6 +1341,7 @@ prefixcc,l4lod,http://ns.inria.fr/l4lod/v2/,canonical prefixcc,la,https://linked.art/ns/terms/,canonical prefixcc,laabs,http://dbpedia.org/resource/,namespace_alias prefixcc,label,http://purl.org/net/vocab/2004/03/label#,canonical +prefixcc,labo,http://purl.obolibrary.org/obo/LABO_,canonical prefixcc,lado,http://archaeology.link/ontology#,canonical prefixcc,lang,http://ontologi.es/lang/core#,canonical prefixcc,language,http://id.loc.gov/vocabulary/iso639-1/,canonical @@ -1402,6 +1424,7 @@ prefixcc,linkedmdb,http://data.linkedmdb.org/,canonical prefixcc,linkml,https://w3id.org/linkml/,canonical prefixcc,linkrel,https://www.w3.org/ns/iana/link-relations/relation#,namespace_alias prefixcc,lio,http://purl.org/net/lio#,canonical +prefixcc,liph,https://gallosiciliani.unict.it/ns/lpont#,canonical prefixcc,lipro,http://purl.obolibrary.org/obo/LIPRO_,canonical prefixcc,lis,http://rds.posccaesar.org/ontology/lis14/rdl/,canonical prefixcc,list,http://www.w3.org/2000/10/swap/list#,canonical @@ -1493,6 +1516,8 @@ prefixcc,maet,http://edg.topbraid.solutions/taxonomy/macroeconomics/,canonical prefixcc,mag,https://makg.org/property/,canonical prefixcc,magmardl,http://www.semanticweb.org/magma-core/rdl#,canonical prefixcc,magmauser,http://www.semanticweb.org/magma-core/user#,canonical +prefixcc,maid,https://mutual-aid.app/ns/core#,canonical +prefixcc,makeup,http://example.org/makeup#,canonical prefixcc,malaka,http://george.gr/,canonical prefixcc,malignneo,http://www.agfa.com/w3c/2009/malignantNeoplasm#,canonical prefixcc,mammal,http://lod.taxonconcept.org/ontology/p01/Mammalia/index.owl#,canonical @@ -1509,6 +1534,7 @@ prefixcc,maroc,http://fr.dbpedia.org/page/Maroc/,canonical prefixcc,marshall,http://sites.google.com/site/xgmaitc/,canonical prefixcc,maso,http://securitytoolbox.appspot.com/MASO#,canonical prefixcc,master1,http://idl.u-grenoble3.fr/,canonical +prefixcc,mat,http://purl.obolibrary.org/obo/MAT_,canonical prefixcc,math,http://www.w3.org/2000/10/swap/math#,canonical prefixcc,matmine,http://materialsmine.org/ns/,canonical prefixcc,matrycs,http://matrycs.com/,canonical @@ -1531,6 +1557,7 @@ prefixcc,meat,http://example.com/,canonical prefixcc,meb,http://rdf.myexperiment.org/ontologies/base/,canonical prefixcc,media,http://search.yahoo.com/searchmonkey/media/,canonical prefixcc,medred,http://w3id.org/medred/medred#,canonical +prefixcc,mee,http://www.w3.org/ns/pim/meeting#,canonical prefixcc,meeting,http://www.w3.org/2002/07/meeting#,canonical prefixcc,meetup,http://www.lotico.com/meetup/,canonical prefixcc,mei,http://www.music-encoding.org/ns/mei/,canonical @@ -1608,6 +1635,7 @@ prefixcc,motogp,http://www.motogp.com/,canonical prefixcc,movie,http://data.linkedmdb.org/resource/movie/,canonical prefixcc,movieo,http://movie.com/ontology/,canonical prefixcc,mp,http://jicamaro.info/mp#,canonical +prefixcc,mpath,http://purl.obolibrary.org/obo/MPATH_,canonical prefixcc,mpbv,http://meta-pfarrerbuch.evangelische-archive.de/vocabulary#,canonical prefixcc,mpeg7,http://rhizomik.net/ontologies/2005/03/Mpeg7-2001.owl#,canonical prefixcc,mpg123,https://devuan.net.br/wiki/mpg123/,canonical @@ -1646,6 +1674,7 @@ prefixcc,myprefix,http://myprefix.org/,canonical prefixcc,myspace,http://purl.org/ontology/myspace#,canonical prefixcc,myspo,http://purl.org/ontology/myspace#,namespace_alias prefixcc,mysql,http://web-semantics.org/ns/mysql/,canonical +prefixcc,nace2,http://data.europa.eu/ux2/nace2/,canonical prefixcc,nalt,https://lod.nal.usda.gov/nalt/,canonical prefixcc,name,http://example.org/name#,canonical prefixcc,namespaces,https://vg.no/,canonical @@ -1734,6 +1763,7 @@ prefixcc,oac,https://w3id.org/oac#,canonical prefixcc,oad,http://lod.xdams.org/reload/oad/,canonical prefixcc,oae,http://www.ics.forth.gr/isl/oae/core#,canonical prefixcc,oan,http://data.lirmm.fr/ontologies/oan/,canonical +prefixcc,oarcs,http://purl.obolibrary.org/obo/OARCS_,canonical prefixcc,oarj,http://opendepot.org/reference/linked/1.0/,canonical prefixcc,oat,http://openlinksw.com/schemas/oat/,canonical prefixcc,oauth,http://demiblog.org/vocab/oauth#,canonical @@ -1815,6 +1845,7 @@ prefixcc,okkam,http://models.okkam.org/ENS-core-vocabulary#,canonical prefixcc,olac,http://www.language-archives.org/OLAC/1.0/,canonical prefixcc,olac11,http://www.language-archives.org/OLAC/1.1/,canonical prefixcc,olad,http://openlad.org/vocab#,canonical +prefixcc,olatdv,http://purl.obolibrary.org/obo/OlatDv_,canonical prefixcc,olca,http://www.lingvoj.org/olca#,canonical prefixcc,olia,http://purl.org/olia/olia.owl#,canonical prefixcc,olias,http://purl.org/olia/system.owl#,namespace_alias @@ -1828,6 +1859,7 @@ prefixcc,omc,http://purl.org/ontomedia/ext/common/bestiary#,canonical prefixcc,omdoc,http://omdoc.org/ontology/,canonical prefixcc,ome,http://purl.org/ontomedia/core/expression#,canonical prefixcc,omg,https://w3id.org/omg#,canonical +prefixcc,omiabis,http://purl.obolibrary.org/obo/OMIABIS_,canonical prefixcc,omim,http://purl.bioontology.org/ontology/OMIM/,canonical prefixcc,omit,http://purl.obolibrary.org/obo/OMIT_,canonical prefixcc,oml,http://def.seegrid.csiro.au/ontology/om/om-lite#,canonical @@ -1873,6 +1905,7 @@ prefixcc,opengov,http://www.w3.org/opengov#,canonical prefixcc,openlinks,http://www.openlinksw.com/schemas/virtrdf#,canonical prefixcc,opensearch,http://a9.com/-/spec/opensearch/1.1/,canonical prefixcc,openskos,http://openskos.org/xmlns#,canonical +prefixcc,openwemi,https://ns.dublincore.org/openwemi/,canonical prefixcc,oper,http://sweet.jpl.nasa.gov/2.0/mathOperation.owl#,canonical prefixcc,opl,http://openlinksw.com/schema/attribution#,canonical prefixcc,oplacl,http://www.openlinksw.com/ontology/acl#,canonical @@ -1990,8 +2023,8 @@ prefixcc,pat,http://purl.org/hpi/patchr#,canonical prefixcc,pato,http://purl.obolibrary.org/obo/,namespace_alias prefixcc,pattern,http://www.essepuntato.it/2008/12/pattern#,canonical prefixcc,pav,http://purl.org/pav/,canonical -prefixcc,pay,http://reference.data.gov.uk/def/payment#,namespace_alias -prefixcc,payment,http://reference.data.gov.uk/def/payment#,canonical +prefixcc,pay,http://reference.data.gov.uk/def/payment#,canonical +prefixcc,payment,http://reference.data.gov.uk/def/payment#,namespace_alias prefixcc,pbac,https://w3id.org/pbac#,canonical prefixcc,pbo,http://purl.org/ontology/pbo/core#,canonical prefixcc,pbody,http://reference.data.gov.uk/def/public-body/,canonical @@ -2149,6 +2182,7 @@ prefixcc,ps,https://w3id.org/payswarm#,canonical prefixcc,psdo,http://purl.obolibrary.org/obo/PSDO_,canonical prefixcc,psh,http://ns.inria.fr/probabilistic-shacl/,canonical prefixcc,psm,https://paul.ti.rw.fau.de/~jo00defe/ont/psm#,canonical +prefixcc,psn,https://purl.org/psn/vocab#,canonical prefixcc,pso,http://purl.org/spar/pso/,canonical prefixcc,psv,http://www.wikidata.org/prop/statement/value/,canonical prefixcc,psych,http://purl.org/vocab/psychometric-profile/,canonical @@ -2209,6 +2243,7 @@ prefixcc,raul,http://vocab.deri.ie/raul#,canonical prefixcc,raum,https://terminology.fraunhofer.de/voc/raum#,canonical prefixcc,rb,https://w3id.org/riverbench/schema/metadata#,canonical prefixcc,rbdoc,https://w3id.org/riverbench/schema/documentation#,canonical +prefixcc,rbo,http://purl.obolibrary.org/obo/RBO_,canonical prefixcc,rc,https://w3id.org/rc#,canonical prefixcc,rcgs,https://collection.rcgs.jp/terms/,canonical prefixcc,rda,http://www.rdaregistry.info/,canonical @@ -2310,6 +2345,7 @@ prefixcc,rdfa,http://www.w3.org/ns/rdfa#,canonical prefixcc,rdfdata,http://rdf.data-vocabulary.org/rdf.xml#,canonical prefixcc,rdfdf,http://www.openlinksw.com/virtrdf-data-formats#,canonical prefixcc,rdfg,http://www.w3.org/2004/03/trix/rdfg-1/,canonical +prefixcc,rdfl,https://w3id.org/rdf-lens/ontology#,canonical prefixcc,rdfp,https://w3id.org/rdfp/,canonical prefixcc,rdfs,http://www.w3.org/2000/01/rdf-schema#,canonical prefixcc,rdfsharp,https://rdfsharp.codeplex.com/,canonical @@ -2364,6 +2400,7 @@ prefixcc,rm,http://jazz.net/ns/rm#,canonical prefixcc,rml,http://w3id.org/rml/,canonical prefixcc,rmlt,http://semweb.mmlab.be/ns/rml-target#,canonical prefixcc,rmo,http://eatld.et.tu-dresden.de/rmo#,canonical +prefixcc,rnao,http://purl.obolibrary.org/obo/RNAO_,canonical prefixcc,rnce,https://data.cultureelerfgoed.nl/id/rnce#,canonical prefixcc,rnews,http://iptc.org/std/rNews/2011-10-07#,canonical prefixcc,ro,http://purl.org/wf4ever/ro#,canonical @@ -2455,6 +2492,7 @@ prefixcc,sc,http://purl.org/science/owl/sciencecommons/,canonical prefixcc,scco,http://rdf.ebi.ac.uk/terms/surechembl#,canonical prefixcc,scdo,http://purl.obolibrary.org/obo/SCDO_,canonical prefixcc,schema,http://schema.org/,canonical +prefixcc,schemas,https://schema.org/,namespace_alias prefixcc,scho,http://www.scholarlydata.org/ontology/conference-ontology.owl#,canonical prefixcc,schoi,https://w3id.org/scholarlydata/ontology/indicators-ontology.owl#,canonical prefixcc,scholl,http://menemeneml.com/school#,canonical @@ -2563,6 +2601,7 @@ prefixcc,skosthes,http://purl.org/iso25964/skos-thes#,namespace_alias prefixcc,skosxl,http://www.w3.org/2008/05/skos-xl#,canonical prefixcc,sl,http://www.semanlink.net/2001/00/semanlink-schema#,canonical prefixcc,slm,http://urn.fi/URN:NBN:fi:au:slm:,canonical +prefixcc,slso,http://purl.obolibrary.org/obo/SLSO_,canonical prefixcc,sm,http://topbraid.org/sparqlmotion#,canonical prefixcc,smartapi,http://smart-api.io/ontology/1.0/smartapi#,canonical prefixcc,smf,http://topbraid.org/sparqlmotionfunctions#,canonical @@ -2944,6 +2983,7 @@ prefixcc,test2,http://this.invalid/test2#,canonical prefixcc,text,http://jena.apache.org/text#,canonical prefixcc,textgrid,https://textgridrep.org/,canonical prefixcc,tg,https://triplydb.com/Triply/tg/def/,canonical +prefixcc,tgc,http://www.hds.utc.fr/tg#,canonical prefixcc,tgm,http://id.loc.gov/vocabulary/graphicMaterials/,canonical prefixcc,tgma,http://purl.obolibrary.org/obo/TGMA_,canonical prefixcc,tgn,http://vocab.getty.edu/tgn/,canonical @@ -2971,6 +3011,7 @@ prefixcc,toaru,https://metadata.moe/toaru-sparql/elements/,canonical prefixcc,toby,http://tobyinkster.co.uk/#,canonical prefixcc,top,http://w3id.org/topologicpy#,canonical prefixcc,topo,http://data.ign.fr/def/topo#,canonical +prefixcc,tops,http://www.topbraid.org/tops#,canonical prefixcc,tosh,http://topbraid.org/tosh#,canonical prefixcc,tp,https://triplydb.com/Triply/tp/def/,canonical prefixcc,tr,http://www.thomsonreuters.com/,canonical @@ -3057,6 +3098,7 @@ prefixcc,va,http://code-research.eu/ontology/visual-analytics#,canonical prefixcc,vacseen1,http://www.semanticweb.org/parthasb/ontologies/2014/6/vacseen1/,canonical prefixcc,vaem,http://www.linkedmodel.org/schema/vaem#,canonical prefixcc,vag,http://www.essepuntato.it/2013/10/vagueness/,canonical +prefixcc,vair,https://w3id.org/vair#,canonical prefixcc,value,http://gfgfd.vs/,canonical prefixcc,valueflows,https://w3id.org/valueflows/,canonical prefixcc,vam,http://www.metmuseum.org/,canonical @@ -3122,6 +3164,7 @@ prefixcc,vr,https://www.w3.org/2018/credentials/v1/,canonical prefixcc,vra,http://purl.org/vra/,canonical prefixcc,vrank,http://purl.org/voc/vrank#,canonical prefixcc,vs,http://www.w3.org/2003/06/sw-vocab-status/ns#,canonical +prefixcc,vsao,http://purl.obolibrary.org/obo/VSAO_,canonical prefixcc,vsearch,http://vocab.sti2.at/vsearch#,canonical prefixcc,vso,http://purl.org/vso/ns#,canonical prefixcc,vsr,http://purl.org/twc/vocab/vsr#,canonical @@ -3131,6 +3174,7 @@ prefixcc,vsto,http://escience.rpi.edu/ontology/vsto/2/0/vsto.owl#,canonical prefixcc,vstoi,http://hadatac.org/ont/vstoi#,canonical prefixcc,vsw,http://verticalsearchworks.com/ontology/,canonical prefixcc,vsws,http://verticalsearchworks.com/ontology/synset#,canonical +prefixcc,vt,http://purl.obolibrary.org/obo/VT_,canonical prefixcc,vto,http://purl.obolibrary.org/obo/VTO_,canonical prefixcc,vvo,http://purl.org/vvo/ns#,canonical prefixcc,w3,http://www.w3.org/,canonical @@ -3226,6 +3270,7 @@ prefixcc,wscaim,http://www.openk.org/wscaim.owl#,namespace_alias prefixcc,wsdl,http://www.w3.org/ns/wsdl-rdf#,canonical prefixcc,wsl,http://www.wsmo.org/ns/wsmo-lite#,namespace_alias prefixcc,wv,http://vocab.org/waiver/terms/,canonical +prefixcc,xao,http://purl.obolibrary.org/obo/XAO_,canonical prefixcc,xapi,https://w3id.org/xapi/ontology#,canonical prefixcc,xbrli,http://www.xbrl.org/2003/instance#,canonical prefixcc,xbrll,https://w3id.org/vocab/xbrll#,canonical diff --git a/src/prefixmaps/data/w3id.csv b/src/prefixmaps/data/w3id.csv index 066e24d..8fc4b7f 100644 --- a/src/prefixmaps/data/w3id.csv +++ b/src/prefixmaps/data/w3id.csv @@ -58,6 +58,7 @@ w3id,annett-o,https://w3id.org/annett-o/,canonical w3id,aoi,https://w3id.org/aoi/,canonical w3id,APD,https://w3id.org/APD/,canonical w3id,apn,https://w3id.org/apn/,canonical +w3id,APTO,https://w3id.org/APTO/,canonical w3id,aqfo,https://w3id.org/aqfo/,canonical w3id,arco,https://w3id.org/arco/,canonical w3id,ardo,https://w3id.org/ardo/,canonical @@ -67,6 +68,7 @@ w3id,arm,https://w3id.org/arm/,canonical w3id,arp,https://w3id.org/arp/,canonical w3id,art,https://w3id.org/art/,canonical w3id,arto,https://w3id.org/arto/,canonical +w3id,aruna,https://w3id.org/aruna/,canonical w3id,asbingowl,https://w3id.org/asbingowl/,canonical w3id,asdkb,https://w3id.org/asdkb/,canonical w3id,asfe,https://w3id.org/asfe/,canonical @@ -120,6 +122,8 @@ w3id,bloxberg,https://w3id.org/bloxberg/,canonical w3id,bmat,https://w3id.org/bmat/,canonical w3id,BMO,https://w3id.org/BMO/,canonical w3id,bmontology,https://w3id.org/bmontology/,canonical +w3id,bmp,https://w3id.org/bmp/,canonical +w3id,bog,https://w3id.org/bog/,canonical w3id,book,https://w3id.org/book/,canonical w3id,bop,https://w3id.org/bop/,canonical w3id,bot,https://w3id.org/bot/,canonical @@ -160,6 +164,7 @@ w3id,cerif,https://w3id.org/cerif/,canonical w3id,cerrotti,https://w3id.org/cerrotti/,canonical w3id,certainty_nanopubs,https://w3id.org/certainty_nanopubs/,canonical w3id,cevo,https://w3id.org/cevo/,canonical +w3id,cff,https://w3id.org/cff/,canonical w3id,chainpoint,https://w3id.org/chainpoint/,canonical w3id,chalkgrp,https://w3id.org/chalkgrp/,canonical w3id,character-computing,https://w3id.org/character-computing/,canonical @@ -187,6 +192,7 @@ w3id,cld,https://w3id.org/cld/,canonical w3id,clinga,https://w3id.org/clinga/,canonical w3id,clipc,https://w3id.org/clipc/,canonical w3id,clodg,https://w3id.org/clodg/,canonical +w3id,cluedo4KG,https://w3id.org/cluedo4KG/,canonical w3id,cmd,https://w3id.org/cmd/,canonical w3id,CMECS,https://w3id.org/CMECS/,canonical w3id,cmip6dr,https://w3id.org/cmip6dr/,canonical @@ -197,6 +203,7 @@ w3id,cntf,https://w3id.org/cntf/,canonical w3id,cocoon,https://w3id.org/cocoon/,canonical w3id,codata,https://w3id.org/codata/,canonical w3id,codemeta,https://w3id.org/codemeta/,canonical +w3id,codemetasoft,https://w3id.org/codemetasoft/,canonical w3id,codo,https://w3id.org/codo/,canonical w3id,ColActDOnt,https://w3id.org/ColActDOnt/,canonical w3id,combining-linking-techniques,https://w3id.org/combining-linking-techniques/,canonical @@ -251,6 +258,7 @@ w3id,d2kg,https://w3id.org/d2kg/,canonical w3id,d2s,https://w3id.org/d2s/,canonical w3id,dao,https://w3id.org/dao/,canonical w3id,daselab,https://w3id.org/daselab/,canonical +w3id,data-fw,https://w3id.org/data-fw/,canonical w3id,Data-Maturity,https://w3id.org/Data-Maturity/,canonical w3id,data2services,https://w3id.org/data2services/,canonical w3id,datamart,https://w3id.org/datamart/,canonical @@ -268,6 +276,7 @@ w3id,dco,https://w3id.org/dco/,canonical w3id,DCRI-ont,https://w3id.org/DCRI-ont/,canonical w3id,DCRI-ont-spe,https://w3id.org/DCRI-ont-spe/,canonical w3id,DCRI-voc,https://w3id.org/DCRI-voc/,canonical +w3id,dcs-se-extension,https://w3id.org/dcs-se-extension/,canonical w3id,dcso,https://w3id.org/dcso/,canonical w3id,dcx,https://w3id.org/dcx/,canonical w3id,ddb,https://w3id.org/ddb/,canonical @@ -285,6 +294,7 @@ w3id,devops-infra,https://w3id.org/devops-infra/,canonical w3id,dfc,https://w3id.org/dfc/,canonical w3id,dfd,https://w3id.org/dfd/,canonical w3id,DFDP,https://w3id.org/DFDP/,canonical +w3id,dfgfo,https://w3id.org/dfgfo/,canonical w3id,dfo,https://w3id.org/dfo/,canonical w3id,dgarijo,https://w3id.org/dgarijo/,canonical w3id,dgassist,https://w3id.org/dgassist/,canonical @@ -313,15 +323,18 @@ w3id,DLTOntology,https://w3id.org/DLTOntology/,canonical w3id,dm4eepsa,https://w3id.org/dm4eepsa/,canonical w3id,dmi,https://w3id.org/dmi/,canonical w3id,dmo,https://w3id.org/dmo/,canonical +w3id,dmpqv,https://w3id.org/dmpqv/,canonical w3id,dmscope-fdp,https://w3id.org/dmscope-fdp/,canonical w3id,DnD5eCharacter,https://w3id.org/DnD5eCharacter/,canonical w3id,do4kg,https://w3id.org/do4kg/,canonical +w3id,dob,https://w3id.org/dob/,canonical w3id,DockerPedia,https://w3id.org/DockerPedia/,canonical w3id,docmaps,https://w3id.org/docmaps/,canonical w3id,documents,https://w3id.org/documents/,canonical w3id,DOLCE,https://w3id.org/DOLCE/,canonical w3id,dosdp,https://w3id.org/dosdp/,canonical w3id,dot,https://w3id.org/dot/,canonical +w3id,doves,https://w3id.org/doves/,canonical w3id,dpcat,https://w3id.org/dpcat/,canonical w3id,dpp,https://w3id.org/dpp/,canonical w3id,dppo,https://w3id.org/dppo/,canonical @@ -331,6 +344,7 @@ w3id,dqts,https://w3id.org/dqts/,canonical w3id,dream-lab,https://w3id.org/dream-lab/,canonical w3id,drinventor,https://w3id.org/drinventor/,canonical w3id,drone,https://w3id.org/drone/,canonical +w3id,drp,https://w3id.org/drp/,canonical w3id,dsa,https://w3id.org/dsa/,canonical w3id,dsd,https://w3id.org/dsd/,canonical w3id,dso,https://w3id.org/dso/,canonical @@ -386,6 +400,7 @@ w3id,emmo-maeo,https://w3id.org/emmo-maeo/,canonical w3id,empathi,https://w3id.org/empathi/,canonical w3id,encode,https://w3id.org/encode/,canonical w3id,EnergyInformationModel,https://w3id.org/EnergyInformationModel/,canonical +w3id,enershare,https://w3id.org/enershare/,canonical w3id,engrd,https://w3id.org/engrd/,canonical w3id,enigma,https://w3id.org/enigma/,canonical w3id,env,https://w3id.org/env/,canonical @@ -396,12 +411,14 @@ w3id,ep-plan,https://w3id.org/ep-plan/,canonical w3id,epont,https://w3id.org/epont/,canonical w3id,epsilonitalia,https://w3id.org/epsilonitalia/,canonical w3id,ereefs,https://w3id.org/ereefs/,canonical +w3id,ERKNet,https://w3id.org/ERKNet/,canonical w3id,erkreg-fdp,https://w3id.org/erkreg-fdp/,canonical w3id,ern-euro-nmd-fdp,https://w3id.org/ern-euro-nmd-fdp/,canonical w3id,esbm,https://w3id.org/esbm/,canonical w3id,esim,https://w3id.org/esim/,canonical w3id,ESO,https://w3id.org/ESO/,canonical w3id,esw,https://w3id.org/esw/,canonical +w3id,etap,https://w3id.org/etap/,canonical w3id,EUREF-HDC,https://w3id.org/EUREF-HDC/,canonical w3id,euro-nmd-kpis,https://w3id.org/euro-nmd-kpis/,canonical w3id,EUTaxO,https://w3id.org/EUTaxO/,canonical @@ -437,6 +454,7 @@ w3id,FAIR_eva,https://w3id.org/FAIR_eva/,canonical w3id,FAIR_Evaluator,https://w3id.org/FAIR_Evaluator/,canonical w3id,FAIR_Tests,https://w3id.org/FAIR_Tests/,canonical w3id,FAIR_Training_LDP,https://w3id.org/FAIR_Training_LDP/,canonical +w3id,fairchecker,https://w3id.org/fairchecker/,canonical w3id,faircookbook,https://w3id.org/faircookbook/,canonical w3id,fairjupyter,https://w3id.org/fairjupyter/,canonical w3id,FAIROS,https://w3id.org/FAIROS/,canonical @@ -485,6 +503,7 @@ w3id,fst,https://w3id.org/fst/,canonical w3id,ftm,https://w3id.org/ftm/,canonical w3id,FTP,https://w3id.org/FTP/,canonical w3id,ftr,https://w3id.org/ftr/,canonical +w3id,fuel,https://w3id.org/fuel/,canonical w3id,function,https://w3id.org/function/,canonical w3id,fuskg,https://w3id.org/fuskg/,canonical w3id,g0v,https://w3id.org/g0v/,canonical @@ -493,6 +512,8 @@ w3id,gaia-x,https://w3id.org/gaia-x/,canonical w3id,games,https://w3id.org/games/,canonical w3id,gas,https://w3id.org/gas/,canonical w3id,GasInformationModel,https://w3id.org/GasInformationModel/,canonical +w3id,GayCities,https://w3id.org/GayCities/,canonical +w3id,GayLesbianBisexualTVCharacters,https://w3id.org/GayLesbianBisexualTVCharacters/,canonical w3id,gba,https://w3id.org/gba/,canonical w3id,gbo,https://w3id.org/gbo/,canonical w3id,GConsent,https://w3id.org/GConsent/,canonical @@ -524,6 +545,7 @@ w3id,gom,https://w3id.org/gom/,canonical w3id,gpo,https://w3id.org/gpo/,canonical w3id,gptto,https://w3id.org/gptto/,canonical w3id,Green-AI-Ontology,https://w3id.org/Green-AI-Ontology/,canonical +w3id,Greens,https://w3id.org/Greens/,canonical w3id,greycite,https://w3id.org/greycite/,canonical w3id,gso,https://w3id.org/gso/,canonical w3id,gub,https://w3id.org/gub/,canonical @@ -540,6 +562,7 @@ w3id,hclscg,https://w3id.org/hclscg/,canonical w3id,hdgi,https://w3id.org/hdgi/,canonical w3id,hdruk,https://w3id.org/hdruk/,canonical w3id,health-schemas,https://w3id.org/health-schemas/,canonical +w3id,hefquin,https://w3id.org/hefquin/,canonical w3id,helis,https://w3id.org/helis/,canonical w3id,hero,https://w3id.org/hero/,canonical w3id,HHT,https://w3id.org/HHT/,canonical @@ -587,6 +610,7 @@ w3id,ifc,https://w3id.org/ifc/,canonical w3id,ifcc,https://w3id.org/ifcc/,canonical w3id,ifcp,https://w3id.org/ifcp/,canonical w3id,iicongraph,https://w3id.org/iicongraph/,canonical +w3id,IIoT,https://w3id.org/IIoT/,canonical w3id,iliad,https://w3id.org/iliad/,canonical w3id,illusnip,https://w3id.org/illusnip/,canonical w3id,imec,https://w3id.org/imec/,canonical @@ -597,13 +621,13 @@ w3id,indonesia-history,https://w3id.org/indonesia-history/,canonical w3id,inesdata,https://w3id.org/inesdata/,canonical w3id,inmevo,https://w3id.org/inmevo/,canonical w3id,inrupt,https://w3id.org/inrupt/,canonical +w3id,inspireOnts,https://w3id.org/inspireOnts/,canonical w3id,instructie,https://w3id.org/instructie/,canonical w3id,interactions,https://w3id.org/interactions/,canonical w3id,interont,https://w3id.org/interont/,canonical w3id,ioc,https://w3id.org/ioc/,canonical w3id,iomust,https://w3id.org/iomust/,canonical w3id,iot,https://w3id.org/iot/,canonical -w3id,iot-tta,https://w3id.org/iot-tta/,canonical w3id,iotd,https://w3id.org/iotd/,canonical w3id,iotf,https://w3id.org/iotf/,canonical w3id,ipsoeu,https://w3id.org/ipsoeu/,canonical @@ -620,6 +644,7 @@ w3id,italia,https://w3id.org/italia/,canonical w3id,itil,https://w3id.org/itil/,canonical w3id,ixo,https://w3id.org/ixo/,canonical w3id,JazzOntology,https://w3id.org/JazzOntology/,canonical +w3id,jelly,https://w3id.org/jelly/,canonical w3id,jhercher,https://w3id.org/jhercher/,canonical w3id,jicamarca,https://w3id.org/jicamarca/,canonical w3id,jp-cos,https://w3id.org/jp-cos/,canonical @@ -649,10 +674,13 @@ w3id,kouigenjimonogatari,https://w3id.org/kouigenjimonogatari/,canonical w3id,kpionto,https://w3id.org/kpionto/,canonical w3id,kpxl,https://w3id.org/kpxl/,canonical w3id,ksa,https://w3id.org/ksa/,canonical +w3id,kw,https://w3id.org/kw/,canonical w3id,kxu,https://w3id.org/kxu/,canonical w3id,l4dr,https://w3id.org/l4dr/,canonical w3id,la,https://w3id.org/la/,canonical w3id,laas-iot,https://w3id.org/laas-iot/,canonical +w3id,laderr,https://w3id.org/laderr/,canonical +w3id,lara,https://w3id.org/lara/,canonical w3id,latuli,https://w3id.org/latuli/,canonical w3id,launuts,https://w3id.org/launuts/,canonical w3id,lbd,https://w3id.org/lbd/,canonical @@ -710,8 +738,10 @@ w3id,lustre,https://w3id.org/lustre/,canonical w3id,Mach30,https://w3id.org/Mach30/,canonical w3id,madmp,https://w3id.org/madmp/,canonical w3id,makg,https://w3id.org/makg/,canonical +w3id,malke,https://w3id.org/malke/,canonical w3id,mapvowl,https://w3id.org/mapvowl/,canonical w3id,mare,https://w3id.org/mare/,canonical +w3id,matolab,https://w3id.org/matolab/,canonical w3id,mbl,https://w3id.org/mbl/,canonical w3id,mdc-docs,https://w3id.org/mdc-docs/,canonical w3id,mdo,https://w3id.org/mdo/,canonical @@ -729,6 +759,7 @@ w3id,metamodeling,https://w3id.org/metamodeling/,canonical w3id,mex,https://w3id.org/mex/,canonical w3id,mgkb,https://w3id.org/mgkb/,canonical w3id,mica,https://w3id.org/mica/,canonical +w3id,micoll-map,https://w3id.org/micoll-map/,canonical w3id,midas-catalog,https://w3id.org/midas-catalog/,canonical w3id,midas-metadata,https://w3id.org/midas-metadata/,canonical w3id,mifesto,https://w3id.org/mifesto/,canonical @@ -761,6 +792,7 @@ w3id,montolo,https://w3id.org/montolo/,canonical w3id,moody,https://w3id.org/moody/,canonical w3id,moont,https://w3id.org/moont/,canonical w3id,MoRe-SFB1475,https://w3id.org/MoRe-SFB1475/,canonical +w3id,moro,https://w3id.org/moro/,canonical w3id,mosaic,https://w3id.org/mosaic/,canonical w3id,mpilhlt,https://w3id.org/mpilhlt/,canonical w3id,MQIO,https://w3id.org/MQIO/,canonical @@ -782,6 +814,7 @@ w3id,music-circle,https://w3id.org/music-circle/,canonical w3id,musico,https://w3id.org/musico/,canonical w3id,musow,https://w3id.org/musow/,canonical w3id,n2t,https://w3id.org/n2t/,canonical +w3id,nanolinks,https://w3id.org/nanolinks/,canonical w3id,nanoweb,https://w3id.org/nanoweb/,canonical w3id,national-ocean-council,https://w3id.org/national-ocean-council/,canonical w3id,navigation_menu,https://w3id.org/navigation_menu/,canonical @@ -826,12 +859,15 @@ w3id,obpa,https://w3id.org/obpa/,canonical w3id,obpd,https://w3id.org/obpd/,canonical w3id,oc,https://w3id.org/oc/,canonical w3id,occ,https://w3id.org/occ/,canonical +w3id,ocedo,https://w3id.org/ocedo/,canonical w3id,OCL-SOP,https://w3id.org/OCL-SOP/,canonical w3id,ocqa,https://w3id.org/ocqa/,canonical w3id,ocs,https://w3id.org/ocs/,canonical +w3id,ocsm,https://w3id.org/ocsm/,canonical w3id,ODE_AM,https://w3id.org/ODE_AM/,canonical w3id,odi,https://w3id.org/odi/,canonical w3id,odissei,https://w3id.org/odissei/,canonical +w3id,ods,https://w3id.org/ods/,canonical w3id,oebDataFormats,https://w3id.org/oebDataFormats/,canonical w3id,oebDatasets,https://w3id.org/oebDatasets/,canonical w3id,oerbase,https://w3id.org/oerbase/,canonical @@ -851,6 +887,7 @@ w3id,onderwijs-vlaanderen,https://w3id.org/onderwijs-vlaanderen/,canonical w3id,onto4drone,https://w3id.org/onto4drone/,canonical w3id,ontobio,https://w3id.org/ontobio/,canonical w3id,ontoboldt,https://w3id.org/ontoboldt/,canonical +w3id,ontobpr,https://w3id.org/ontobpr/,canonical w3id,ontocis,https://w3id.org/ontocis/,canonical w3id,ontocity,https://w3id.org/ontocity/,canonical w3id,OntoDM-core-extended,https://w3id.org/OntoDM-core-extended/,canonical @@ -861,9 +898,11 @@ w3id,ontoeng,https://w3id.org/ontoeng/,canonical w3id,OntoExhibit,https://w3id.org/OntoExhibit/,canonical w3id,ontoexp,https://w3id.org/ontoexp/,canonical w3id,ontofnct,https://w3id.org/ontofnct/,canonical +w3id,ontogen,https://w3id.org/ontogen/,canonical w3id,ontogpt,https://w3id.org/ontogpt/,canonical w3id,OntoGraphDB,https://w3id.org/OntoGraphDB/,canonical w3id,ontoim,https://w3id.org/ontoim/,canonical +w3id,ontoindire,https://w3id.org/ontoindire/,canonical w3id,ontolink,https://w3id.org/ontolink/,canonical w3id,ontomlc,https://w3id.org/ontomlc/,canonical w3id,ontoology,https://w3id.org/ontoology/,canonical @@ -884,6 +923,7 @@ w3id,OOSMP,https://w3id.org/OOSMP/,canonical w3id,ooxml,https://w3id.org/ooxml/,canonical w3id,openbadges,https://w3id.org/openbadges/,canonical w3id,opencare,https://w3id.org/opencare/,canonical +w3id,openebench,https://w3id.org/openebench/,canonical w3id,openeduhub,https://w3id.org/openeduhub/,canonical w3id,openfooddata,https://w3id.org/openfooddata/,canonical w3id,opengtsc,https://w3id.org/opengtsc/,canonical @@ -904,6 +944,7 @@ w3id,orphadata,https://w3id.org/orphadata/,canonical w3id,OSCD,https://w3id.org/OSCD/,canonical w3id,osdu,https://w3id.org/osdu/,canonical w3id,oseg,https://w3id.org/oseg/,canonical +w3id,oso,https://w3id.org/oso/,canonical w3id,ost,https://w3id.org/ost/,canonical w3id,ovama-proms,https://w3id.org/ovama-proms/,canonical w3id,OWLChangeOntology,https://w3id.org/OWLChangeOntology/,canonical @@ -932,11 +973,13 @@ w3id,pet,https://w3id.org/pet/,canonical w3id,pfeepsa,https://w3id.org/pfeepsa/,canonical w3id,pghdprovo,https://w3id.org/pghdprovo/,canonical w3id,pgp,https://w3id.org/pgp/,canonical +w3id,pharmaccess,https://w3id.org/pharmaccess/,canonical w3id,phuse,https://w3id.org/phuse/,canonical w3id,phydit,https://w3id.org/phydit/,canonical w3id,pizza2,https://w3id.org/pizza2/,canonical w3id,pkd4wod,https://w3id.org/pkd4wod/,canonical w3id,pkg,https://w3id.org/pkg/,canonical +w3id,pko,https://w3id.org/pko/,canonical w3id,plasma,https://w3id.org/plasma/,canonical w3id,platoon,https://w3id.org/platoon/,canonical w3id,plattform-i40,https://w3id.org/plattform-i40/,canonical @@ -986,6 +1029,7 @@ w3id,rbeepsa,https://w3id.org/rbeepsa/,canonical w3id,rc,https://w3id.org/rc/,canonical w3id,rd-fairmetrics,https://w3id.org/rd-fairmetrics/,canonical w3id,rd-fairness-tests,https://w3id.org/rd-fairness-tests/,canonical +w3id,rdf-connect,https://w3id.org/rdf-connect/,canonical w3id,rdf-spreadsheet,https://w3id.org/rdf-spreadsheet/,canonical w3id,rdfbones,https://w3id.org/rdfbones/,canonical w3id,rdfp,https://w3id.org/rdfp/,canonical @@ -1004,6 +1048,7 @@ w3id,requirement-ontology,https://w3id.org/requirement-ontology/,canonical w3id,research-technology-readiness-levels,https://w3id.org/research-technology-readiness-levels/,canonical w3id,reseo,https://w3id.org/reseo/,canonical w3id,reshare,https://w3id.org/reshare/,canonical +w3id,resiliont,https://w3id.org/resiliont/,canonical w3id,resource2vec,https://w3id.org/resource2vec/,canonical w3id,respond,https://w3id.org/respond/,canonical w3id,resriskonto,https://w3id.org/resriskonto/,canonical @@ -1013,6 +1058,7 @@ w3id,rgom,https://w3id.org/rgom/,canonical w3id,rhonda,https://w3id.org/rhonda/,canonical w3id,ride2rail,https://w3id.org/ride2rail/,canonical w3id,rights-vocabulary,https://w3id.org/rights-vocabulary/,canonical +w3id,rio,https://w3id.org/rio/,canonical w3id,risk,https://w3id.org/risk/,canonical w3id,riskman,https://w3id.org/riskman/,canonical w3id,riskonto,https://w3id.org/riskonto/,canonical @@ -1060,6 +1106,7 @@ w3id,se,https://w3id.org/se/,canonical w3id,sea-lod,https://w3id.org/sea-lod/,canonical w3id,SeaChange,https://w3id.org/SeaChange/,canonical w3id,seas,https://w3id.org/seas/,canonical +w3id,sebi,https://w3id.org/sebi/,canonical w3id,security,https://w3id.org/security/,canonical w3id,sedimark,https://w3id.org/sedimark/,canonical w3id,segittur,https://w3id.org/segittur/,canonical @@ -1099,6 +1146,7 @@ w3id,situannotate,https://w3id.org/situannotate/,canonical w3id,sketup,https://w3id.org/sketup/,canonical w3id,sketx,https://w3id.org/sketx/,canonical w3id,skg,https://w3id.org/skg/,canonical +w3id,skg-if,https://w3id.org/skg-if/,canonical w3id,skgo,https://w3id.org/skgo/,canonical w3id,skz,https://w3id.org/skz/,canonical w3id,slo,https://w3id.org/slo/,canonical @@ -1106,6 +1154,7 @@ w3id,sm,https://w3id.org/sm/,canonical w3id,smarcql,https://w3id.org/smarcql/,canonical w3id,smart-sensing,https://w3id.org/smart-sensing/,canonical w3id,smartcare-fdp,https://w3id.org/smartcare-fdp/,canonical +w3id,smartedge,https://w3id.org/smartedge/,canonical w3id,smartenvironment,https://w3id.org/smartenvironment/,canonical w3id,smartflanders,https://w3id.org/smartflanders/,canonical w3id,smetzger,https://w3id.org/smetzger/,canonical @@ -1172,6 +1221,7 @@ w3id,t-sita,https://w3id.org/t-sita/,canonical w3id,tangpoem,https://w3id.org/tangpoem/,canonical w3id,tao,https://w3id.org/tao/,canonical w3id,tate-skos,https://w3id.org/tate-skos/,canonical +w3id,tav,https://w3id.org/tav/,canonical w3id,tawc,https://w3id.org/tawc/,canonical w3id,td,https://w3id.org/td/,canonical w3id,tdy,https://w3id.org/tdy/,canonical @@ -1183,6 +1233,7 @@ w3id,tern,https://w3id.org/tern/,canonical w3id,terror,https://w3id.org/terror/,canonical w3id,testalod,https://w3id.org/testalod/,canonical w3id,testlink,https://w3id.org/testlink/,canonical +w3id,ThAO,https://w3id.org/ThAO/,canonical w3id,thor,https://w3id.org/thor/,canonical w3id,tib,https://w3id.org/tib/,canonical w3id,timebank,https://w3id.org/timebank/,canonical @@ -1224,6 +1275,7 @@ w3id,unileiden,https://w3id.org/unileiden/,canonical w3id,unit,https://w3id.org/unit/,canonical w3id,UniverseTBD,https://w3id.org/UniverseTBD/,canonical w3id,university,https://w3id.org/university/,canonical +w3id,unocs,https://w3id.org/unocs/,canonical w3id,uom,https://w3id.org/uom/,canonical w3id,urban-iot,https://w3id.org/urban-iot/,canonical w3id,uri4uri,https://w3id.org/uri4uri/,canonical @@ -1259,8 +1311,13 @@ w3id,vocab,https://w3id.org/vocab/,canonical w3id,vocabulary,https://w3id.org/vocabulary/,canonical w3id,voic,https://w3id.org/voic/,canonical w3id,voldemortkg,https://w3id.org/voldemortkg/,canonical +w3id,vpa,https://w3id.org/vpa/,canonical +w3id,VRTI,https://w3id.org/VRTI/,canonical w3id,vsat,https://w3id.org/vsat/,canonical w3id,vsm,https://w3id.org/vsm/,canonical +w3id,vvi,https://w3id.org/vvi/,canonical +w3id,vvr,https://w3id.org/vvr/,canonical +w3id,vvt,https://w3id.org/vvt/,canonical w3id,w2share,https://w3id.org/w2share/,canonical w3id,w4ra,https://w3id.org/w4ra/,canonical w3id,wallet,https://w3id.org/wallet/,canonical @@ -1299,6 +1356,7 @@ w3id,xd,https://w3id.org/xd/,canonical w3id,xfsc,https://w3id.org/xfsc/,canonical w3id,xmal,https://w3id.org/xmal/,canonical w3id,yago,https://w3id.org/yago/,canonical +w3id,yang,https://w3id.org/yang/,canonical w3id,yarrrml,https://w3id.org/yarrrml/,canonical w3id,ylu,https://w3id.org/ylu/,canonical w3id,yxl,https://w3id.org/yxl/,canonical From 6611ba49738766781bdaa7460963e1f237d7ab2a Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Fri, 11 Oct 2024 11:37:39 -0700 Subject: [PATCH 2/4] replace db-xrefs.yaml with update from GO --- tests/input/go-db-xrefs.yaml | 308 ++++++++++++++++++++++++----------- 1 file changed, 213 insertions(+), 95 deletions(-) diff --git a/tests/input/go-db-xrefs.yaml b/tests/input/go-db-xrefs.yaml index 584ea10..bb447b2 100644 --- a/tests/input/go-db-xrefs.yaml +++ b/tests/input/go-db-xrefs.yaml @@ -149,19 +149,6 @@ url_syntax: https://www.ebi.ac.uk/biomodels/[example_id] example_id: BIOMD:BIOMD0000000045 example_url: https://www.ebi.ac.uk/biomodels/BIOMD0000000045 -- database: bioRxiv - name: bioRxiv - synonyms: - - BIORXIV - generic_urls: - - https://www.biorxiv.org/ - entity_types: - - type_name: entity - type_id: BET:0000000 - id_syntax: '[0-9]+' - url_syntax: https://www.biorxiv.org/content/[example_id] - example_id: bioRxiv:10.1101/530881v2 - example_url: https://www.biorxiv.org/content/10.1101/530881v2 - database: BRENDA name: BRENDA, The Comprehensive Enzyme Information System generic_urls: @@ -233,9 +220,9 @@ entity_types: - type_name: entity type_id: BET:0000000 - url_syntax: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?genid=[example_id] OK + url_syntax: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?genid=[example_id] example_id: CASGEN:1040 - example_url: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?genid=1040 OK + example_url: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?genid=1040 - database: CASREF name: Catalog of Fishes publications database generic_urls: @@ -243,9 +230,9 @@ entity_types: - type_name: entity type_id: BET:0000000 - url_syntax: https://researcharchive.calacademy.org/research/ichthyology/catalog/getref.asp?id=[example_id] OK + url_syntax: https://researcharchive.calacademy.org/research/ichthyology/catalog/getref.asp?id=[example_id] example_id: CASREF:2031 - example_url: https://researcharchive.calacademy.org/research/ichthyology/catalog/getref.asp?id=2031 OK + example_url: https://researcharchive.calacademy.org/research/ichthyology/catalog/getref.asp?id=2031 - database: CASSPC name: Catalog of Fishes species database synonyms: @@ -522,6 +509,17 @@ url_syntax: http://dictybase.org/publication/[example_id] example_id: dictyBase_REF:10157 example_url: http://dictybase.org/publication/10157 +- database: DisProt + name: DisProt + description: Database of intrinsically disordered proteins + generic_urls: + - https://www.disprot.org + entity_types: + - type_name: entity + type_id: BET:0000000 + url_syntax: https://www.disprot.org/[example_id] + example_id: DP00086 + example_url: https://www.disprot.org/DP00086 - database: DOI name: Digital Object Identifier generic_urls: @@ -567,28 +565,46 @@ example_id: ECO:0000315 example_url: http://www.evidenceontology.org/browse/#ECO_0000315 - database: EcoCyc - name: Encyclopedia of E. coli metabolism + name: Scientific database for the bacterium Escherichia coli K-12 MG1655 generic_urls: - - http://ecocyc.org/ + - https://ecocyc.org/ entity_types: - type_name: biological_process type_id: GO:0008150 - id_syntax: EG[0-9]{5} - url_syntax: http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=[example_id] + id_syntax: ^[A-Za-z0-9+_.%-:]+$ + url_syntax: https://ecocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=[example_id] example_id: EcoCyc:P2-PWY - example_url: http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=P2-PWY + example_url: https://ecocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=P2-PWY + - type_name: protein + type_id: PR:000000001 + id_syntax: ^[A-Za-z0-9+_.%-:]+$ + url_syntax: https://ecocyc.org/gene?orgid=ECOLI&id=[example_id] + example_id: EcoCyc:RBSA-MONOMER + example_url: https://ecocyc.org/gene?orgid=ECOLI&id=RBSA-MONOMER + - type_name: ribonucleic acid + type_id: CHEBI:33697 + id_syntax: ^[A-Za-z0-9+_.%-:]+$ + url_syntax: https://ecocyc.org/gene?orgid=ECOLI&id=[example_id] + example_id: EcoCyc:EG30086 + example_url: https://ecocyc.org/gene?orgid=ECOLI&id=EG30086 + - type_name: protein-containing complex + type_id: GO:0032991 + id_syntax: ^[A-Za-z0-9+_.%-:]+$ + url_syntax: https://ecocyc.org/ECOLI/NEW-IMAGE?id=[example_id] + example_id: EcoCyc:ABC-28-CPLX + example_url: https://ecocyc.org/ECOLI/NEW-IMAGE?id=ABC-28-CPLX - database: EcoCyc_REF - name: Encyclopedia of E. coli metabolism + name: Scientific database for the bacterium Escherichia coli K-12 MG1655 synonyms: - ECOCYC_REF generic_urls: - - http://ecocyc.org/ + - https://ecocyc.org/ entity_types: - type_name: entity type_id: BET:0000000 - url_syntax: http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=[example_id] + url_syntax: https://ecocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=[example_id] example_id: EcoCyc_REF:COLISALII - example_url: http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=COLISALII + example_url: https://ecocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=COLISALII - database: EcoliWiki name: EcoliWiki from EcoliHub description: EcoliHub\'s subsystem for community annotation of E. coli K-12 @@ -777,7 +793,6 @@ - database: FB name: FlyBase synonyms: - - FlyBase - FLYBASE rdf_uri_prefix: http://identifiers.org/flybase/ generic_urls: @@ -789,17 +804,42 @@ url_syntax: http://flybase.org/reports/[example_id].html example_id: FB:FBgn0000024 example_url: http://flybase.org/reports/FBgn0000024.html + - type_name: reference + type_id: BET:0000000 + id_syntax: FBrf[0-9]{7} + url_syntax: http://flybase.org/reports/[example_id].htm + example_id: FBrf0193169 + example_url: https://flybase.org/reports/FBrf0193169.htm - database: FBbt name: Drosophila gross anatomy rdf_uri_prefix: http://purl.obolibrary.org/obo/FBbt_ generic_urls: - http://flybase.org/ entity_types: - - type_name: entity - type_id: BET:0000000 + - type_name: cell + type_id: GO:0005623 + id_syntax: '[0-9]{8}' url_syntax: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:[example_id] - example_id: FBbt:00005177 - example_url: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:00005177 + example_id: FBbt:00007002 + example_url: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:00007002 + - type_name: anatomical entity + type_id: UBERON:0001062 + id_syntax: '[0-9]{8}' + url_syntax: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:[example_id] + example_id: FBbt:10000000 + example_url: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:10000000 +- database: FBdv + name: Drosophila development + rdf_uri_prefix: http://purl.obolibrary.org/obo/FBdv_ + generic_urls: + - http://flybase.org/ + entity_types: + - type_name: life cycle stage + type_id: UBERON:0000105 + id_syntax: '[0-9]{8}' + url_syntax: http://flybase.org/cgi-bin/fbcvq.html?query=FBdv:[example_id] + example_id: FBdv:00007012 + example_url: http://flybase.org/cgi-bin/fbcvq.html?query=FBdv:00007012 - database: FMA name: Foundational Model of Anatomy rdf_uri_prefix: http://purl.obolibrary.org/obo/FMA_ @@ -932,7 +972,7 @@ - database: GO_REF name: Gene Ontology Database references generic_urls: - - http://current.geneontology.org/metadata/gorefs/index.html + - http://geneontology.org/gorefs entity_types: - type_name: entity type_id: BET:0000000 @@ -1167,6 +1207,17 @@ rdf_uri_prefix: http://purl.obolibrary.org/obo/IAO_ generic_urls: - http://purl.obolibrary.org/obo/iao +- database: iBB + name: iBeetleBase + description: RNAi phenotypes for beetle (Tribolium) genes + generic_urls: + - https://ibeetle-base.uni-goettingen.de/ + entity_types: + - type_name: entity + type_id: BET:0000000 + url_syntax: https://ibeetle-base.uni-goettingen.de/details|[example_id] + example_id: TC006055 + example_url: https://ibeetle-base.uni-goettingen.de/details/TC006055 - database: IMG name: Integrated Microbial Genomes; JGI web site for genome annotation generic_urls: @@ -1205,7 +1256,7 @@ id_syntax: EBI-[0-9]+ url_syntax: https://www.ebi.ac.uk/intact/pages/interactions/interactions.xhtml?query=[example_id] example_id: IntAct:EBI-17086 - example_url: https://www.ebi.ac.uk/intact/pages/interactions/interactions.xhtml?query=EBI-17086 + example_url: https://www.ebi.ac.uk/intact/pages/interactions/interactions.xhtml?query=EBI-17086 - type_name: protein-containing complex type_id: GO:0032991 id_syntax: EBI-[0-9]+ @@ -1214,7 +1265,7 @@ example_url: http://www.ebi.ac.uk/complexportal/complex/EBI-10205244 - database: InterPro name: InterPro database of protein domains and motifs - rdf_uri_prefix: https://registry.identifiers.org/registry/interpro + rdf_uri_prefix: http://identifiers.org/interpro/ synonyms: - INTERPRO - IPR @@ -1432,7 +1483,7 @@ example_url: https://maizegdb.org/gene_center/gene/12098 - database: MaizeGDB_Locus name: MaizeGDB - rdf_uri_prefix: https://identifiers.org/maizegdb.locus + rdf_uri_prefix: http://identifiers.org/maizegdb.locus/ generic_urls: - https://www.maizegdb.org/ entity_types: @@ -1487,6 +1538,7 @@ entity_types: - type_name: protein type_id: PR:000000001 + id_syntax: '^[SCTAGMNU]\d{2}\.([AB]\d{2}|\d{3}|[A-Z]{3})$' url_syntax: https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=[example_id] example_id: MEROPS:A08.001 example_url: https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=A08.001 @@ -1497,11 +1549,13 @@ entity_types: - type_name: entity type_id: BET:0000000 + id_syntax: '^[SCTAGMNU]\d+$' url_syntax: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=[example_id] example_id: MEROPS_fam:M18 example_url: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=M18 - type_name: protein family type_id: NCIT:C20130 + id_syntax: '^[SCTAGMNU]\d+$' url_syntax: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=[example_id] example_id: MEROPS_fam:M18 example_url: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=M18 @@ -1522,15 +1576,16 @@ name: Metabolic Encyclopedia of metabolic and other pathways synonyms: - METACYC - rdf_uri_prefix: https://identifiers.org/metacyc.reaction + rdf_uri_prefix: http://identifiers.org/metacyc.reaction/ generic_urls: - - http://metacyc.org/ + - https://metacyc.org/ entity_types: - type_name: entity type_id: BET:0000000 - url_syntax: http://biocyc.org/META/NEW-IMAGE?type=NIL&object=[example_id] + id_syntax: ^[A-Za-z0-9+_.%-:]+$ + url_syntax: https://biocyc.org/META/NEW-IMAGE?type=NIL&object=[example_id] example_id: MetaCyc:GLUTDEG-PWY - example_url: http://biocyc.org/META/NEW-IMAGE?type=NIL&object=GLUTDEG-PWY + example_url: https://biocyc.org/META/NEW-IMAGE?type=NIL&object=GLUTDEG-PWY - database: MGCSC_GENETIC_STOCKS name: Maize Genetics and Genomics Database generic_urls: @@ -1551,7 +1606,7 @@ example_id: MGD:Adcy9 - database: MGI name: Mouse Genome Informatics - rdf_uri_prefix: https://identifiers.org/MGI + rdf_uri_prefix: http://identifiers.org/MGI/ generic_urls: - http://www.informatics.jax.org/ entity_types: @@ -1626,7 +1681,7 @@ - GeneID - LocusID - NCBI_Gene - rdf_uri_prefix: https://identifiers.org/ncbigene + rdf_uri_prefix: http://identifiers.org/ncbigene/ generic_urls: - http://www.ncbi.nlm.nih.gov/ entity_types: @@ -1748,16 +1803,28 @@ type_id: BET:0000000 - database: PANTHER name: Protein ANalysis THrough Evolutionary Relationships Classification System - rdf_uri_prefix: https://identifiers.org/panther.family + rdf_uri_prefix: http://identifiers.org/panther.family/ generic_urls: - http://www.pantherdb.org/ entity_types: - type_name: protein family type_id: NCIT:C20130 - id_syntax: PTN[0-9]{9}|PTHR[0-9]{5}_[A-Z0-9]+ + id_syntax: PTN[0-9]{9}|PTHR[0-9]{5}|PTHR[0-9]{5}:SF[0-9]+ url_syntax: http://www.pantherdb.org/panther/lookupId.jsp?id=[example_id] example_id: PANTHER:PTHR11455 example_url: http://www.pantherdb.org/panther/lookupId.jsp?id=PTHR10000 +- database: orcid + name: Open Researcher and Contributor + description: ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. + generic_urls: + - https://orcid.org/ + entity_types: + - type_name: entity + type_id: BET:0000000 + id_syntax: ^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$ + url_syntax: https://orcid.org/[example_id] + example_id: orcid:0000-0003-4423-4370 + example_url: https://orcid.org/0000-0003-4423-4370 - database: ParkinsonsUK-UCL name: Parkinsons Disease Gene Ontology Initiative generic_urls: @@ -1811,20 +1878,20 @@ name: Pfam database of protein families description: Pfam is a collection of protein families represented by sequence alignments and hidden Markov models (HMMs) generic_urls: - - http://pfam.xfam.org + - https://www.ebi.ac.uk/interpro/entry/pfam entity_types: - type_name: sequence feature type_id: SO:0000110 id_syntax: PF[0-9]{5} - url_syntax: https://pfam.xfam.org/family/[example_id] + url_syntax: https://www.ebi.ac.uk/interpro/entry/pfam/[example_id] example_id: Pfam:PF00046 - example_url: https://pfam.xfam.org/family/PF00069 + example_url: https://www.ebi.ac.uk/interpro/entry/pfam/PF00069 - type_name: polypeptide region type_id: SO:0000839 id_syntax: PF[0-9]{5} - url_syntax: https://pfam.xfam.org/family/[example_id] + url_syntax: https://www.ebi.ac.uk/interpro/entry/pfam/[example_id] example_id: Pfam:PF00046 - example_url: https://pfam.xfam.org/family/PF00069 + example_url: https://www.ebi.ac.uk/interpro/entry/pfam/PF00069 - database: PharmGKB name: Pharmacogenetics and Pharmacogenomics Knowledge Base generic_urls: @@ -1842,6 +1909,18 @@ entity_types: - type_name: entity type_id: BET:0000000 +- database: PHI-base + name: Pathogen-Host Interactions Database + description: PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. + generic_urls: + - http://www.phi-base.org/ + entity_types: + - type_name: entity + type_id: BET:0000000 + id_syntax: 'PHI:[0-9]+' + url_syntax: http://www.phi-base.org/searchFacet.htm?queryTerm=PHI:[example_id] + example_id: PHI:3 + example_url: http://www.phi-base.org/searchFacet.htm?queryTerm=PHI:3 - database: PIR name: Protein Information Resource generic_urls: @@ -1875,7 +1954,7 @@ example_url: http://www.plantsystematics.org/imagebyid_37658.html - database: PMCID name: Pubmed Central - synonyms: + synonyms: - PMC generic_urls: - https://www.ncbi.nlm.nih.gov/pmc/ @@ -1938,13 +2017,13 @@ example_url: http://planteome.org/po_ref/00001 - database: PlasmoDB name: PlasmoDB - rdf_uri_prefix: https://identifiers.org/plasmodb + rdf_uri_prefix: http://identifiers.org/plasmodb/ generic_urls: - https://plasmodb.org entity_types: - type_name: gene type_id: SO:0000704 - id_syntax: PF3D7_[0-9]{7}) + id_syntax: PF3D7_[0-9]{7} url_syntax: https://plasmodb.org/plasmo/app/record/gene/[example_id] example_id: PF3D7_1467300 example_url: https://plasmodb.org/plasmo/app/record/gene/PF3D7_1467300 @@ -1957,7 +2036,7 @@ type_id: BET:0000000 - database: PomBase name: PomBase - rdf_uri_prefix: https://identifiers.org/pombase + rdf_uri_prefix: http://identifiers.org/pombase/ generic_urls: - https://www.pombase.org/ entity_types: @@ -1978,7 +2057,7 @@ - database: PPI name: Pseudomonas syringae community annotation project generic_urls: - - http://www.pseudomonas-syringae.org/ + - http://www.pseudomonas-syringae.org/ entity_types: - type_name: entity type_id: BET:0000000 @@ -1993,9 +2072,9 @@ - type_name: protein type_id: PR:000000001 id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}){1}(-[0-9]+){0,1}|[0-9]{9} - url_syntax: https://proconsortium.org/app/entry/PR_[example_id] + url_syntax: https://purl.obolibrary.org/obo/PR_[example_id] example_id: PR:Q64445 - example_url: https://proconsortium.org/app/entry/PR_Q64445 + example_url: https://purl.obolibrary.org/obo/PR_000060258 - database: PRINTS name: PRINTS compendium of protein fingerprints generic_urls: @@ -2128,7 +2207,7 @@ synonyms: - REACTOME - REAC - rdf_uri_prefix: https://identifiers.org/reactome + rdf_uri_prefix: http://identifiers.org/reactome/ generic_urls: - https://www.reactome.org/ entity_types: @@ -2200,7 +2279,7 @@ synonyms: - RAD - RGDID - rdf_uri_prefix: https://identifiers.org/rgd + rdf_uri_prefix: http://identifiers.org/rgd/ generic_urls: - https://rgd.mcw.edu/ entity_types: @@ -2209,7 +2288,7 @@ id_syntax: '[0-9]{4,7}' url_syntax: https://rgd.mcw.edu/rgdweb/search/search.html?term=[example_id] example_id: RGD:2004 - example_url: https://rgd.mcw.edu/rgdweb/search/search.html?term=2004 + example_url: https://rgd.mcw.edu/rgdweb/search/search.html?term=2004 - database: RHEA name: Rhea, the Annotated Reactions Database description: Rhea is a manually annotated database of chemical reactions. All data in Rhea is freely accessible and available for anyone to use. @@ -2300,16 +2379,16 @@ name: Saccharomyces Genome Database synonyms: - SGDID - rdf_uri_prefix: https://identifiers.org/sgd + rdf_uri_prefix: http://identifiers.org/sgd/ generic_urls: - http://www.yeastgenome.org/ entity_types: - type_name: gene type_id: SO:0000704 id_syntax: S[0-9]{9} - url_syntax: https://www.yeastgenome.org/locus/[example_id] + url_syntax: https://www.yeastgenome.org/search?q=[example_id]&is_quick=true example_id: SGD:S000006169 - example_url: https://www.yeastgenome.org/locus/S000006169 + example_url: https://www.yeastgenome.org/search?q=S000006169&is_quick=true - database: SGD_LOCUS name: Saccharomyces Genome Database generic_urls: @@ -2317,9 +2396,9 @@ entity_types: - type_name: entity type_id: BET:0000000 - url_syntax: http://www.yeastgenome.org/locus/[example_id]/overview + url_syntax: https://www.yeastgenome.org/search?q=[example_id]&is_quick=true example_id: SGD_LOCUS:GAL4 - example_url: http://www.yeastgenome.org/locus/S000006169/overview + example_url: https://www.yeastgenome.org/search?q=S000006169&is_quick=true - database: SGD_REF name: Saccharomyces Genome Database generic_urls: @@ -2330,11 +2409,21 @@ url_syntax: http://www.yeastgenome.org/reference/[example_id]/overview example_id: SGD_REF:S000049602 example_url: http://www.yeastgenome.org/reference/S000049602/overview +- database: SGD_PWY + name: Saccharomyces Genome Database YeastPathways + generic_urls: + - https://pathway.yeastgenome.org/ + entity_types: + - type_name: entity + type_id: BET:0000000 + url_syntax: https://www.yeastgenome.org/locus/[example_id] + example_id: SGD_PWY:CYSTEINE-SYN2-PWY + example_url: https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=NIL&object=SERSYN-PWY - database: SGN name: Sol Genomics Network synonyms: - SGN_gene - rdf_uri_prefix: https://identifiers.org/sgn + rdf_uri_prefix: http://identifiers.org/sgn/ generic_urls: - https://www.sgn.cornell.edu/ entity_types: @@ -2383,14 +2472,20 @@ type_id: SO:0000400 id_syntax: \d{7} url_syntax: http://www.sequenceontology.org/browser/current_svn/term/SO:[example_id] - example_id: SO:0000195 - example_url: http://www.sequenceontology.org/browser/current_svn/term/SO:0001850 + example_id: SO:0000400 + example_url: http://www.sequenceontology.org/browser/current_svn/term/SO:0000400 - type_name: sequence feature type_id: SO:0000110 id_syntax: \d{7} url_syntax: http://www.sequenceontology.org/browser/current_svn/term/SO:[example_id] - example_id: SO:0000195 - example_url: http://www.sequenceontology.org/browser/current_svn/term/SO:0001850 + example_id: SO:0000307 + example_url: http://www.sequenceontology.org/browser/current_svn/term/SO:0000307 + - type_name: sequence motif + type_id: SO:0001683 + id_syntax: \d{7} + url_syntax: http://www.sequenceontology.org/browser/current_svn/term/SO:[example_id] + example_id: SO:0001166 + example_url: http://www.sequenceontology.org/browser/current_svn/term/SO:0001166 - database: Soy_gene name: SoyBase generic_urls: @@ -2456,7 +2551,7 @@ type_id: BET:0000000 - database: TAIR name: The Arabidopsis Information Resource - rdf_uri_prefix: https://identifiers.org/tair.locus + rdf_uri_prefix: http://identifiers.org/tair.locus/ generic_urls: - http://www.arabidopsis.org/ entity_types: @@ -2478,10 +2573,10 @@ url_syntax: http://arabidopsis.org/servlets/TairObject?accession=[example_id] example_id: TAIR:locus:2146653 example_url: http://arabidopsis.org/servlets/TairObject?accession=locus:2146653 -- database: taxon +- database: NCBITaxon name: NCBI Taxonomy synonyms: - - NCBITaxon + - taxon - ncbi_taxid rdf_uri_prefix: http://purl.obolibrary.org/obo/NCBITaxon_ generic_urls: @@ -2490,7 +2585,7 @@ - type_name: entity type_id: BET:0000000 url_syntax: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[example_id] - example_id: taxon:7227 + example_id: NCBITaxon:7227 example_url: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=3702 - database: TC name: Transport Protein Database @@ -2505,7 +2600,7 @@ example_url: http://www.tcdb.org/tcdb/index.php?tc=9.A.4.1.1 - database: TGD name: Tetrahymena Genome Database - rdf_uri_prefix: https://identifiers.org/tgd + rdf_uri_prefix: http://identifiers.org/tgd/ generic_urls: - http://www.ciliate.org/ entity_types: @@ -2557,10 +2652,10 @@ type_id: BET:0000000 url_syntax: http://dendrome.ucdavis.edu/treegenes/protein/view_protein.php?id=[example_id] example_id: TreeGenes:254 - example_url: http://dendrome.ucdavis.edu/treegenes/protein/view_protein.php?id=254 + example_url: http://dendrome.ucdavis.edu/treegenes/protein/view_protein.php?id=254 - database: TriTrypDB name: TriTrypDB - rdf_uri_prefix: https://identifiers.org/tritrypdb + rdf_uri_prefix: http://identifiers.org/tritrypdb/ generic_urls: - https://tritrypdb.org/ entity_types: @@ -2569,7 +2664,7 @@ id_syntax: ((LmjF|LinJ|LmxM|LINF)\.[0-9]{2}\.[0-9]{4})|(Tb[0-9]+\.[A-Za-z0-9]+\.[0-9]+)|(Tb\.[0-9]{6}\.[0-9]+)| url_syntax: https://tritrypdb.org/tritrypdb/app/record/gene/[example_id] example_id: Tb927.1.630 - example_url: https://tritrypdb.org/tritrypdb/app/record/gene/Tb927.1.630 + example_url: https://tritrypdb.org/tritrypdb/app/record/gene/Tb927.1.630 - database: UBERON name: Uber-anatomy ontology description: A multi-species anatomy ontology @@ -2670,13 +2765,13 @@ - database: UniProtKB name: Universal Protein Knowledgebase description: A central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR database - rdf_uri_prefix: https://identifiers.org/uniprot + rdf_uri_prefix: http://identifiers.org/uniprot/ generic_urls: - http://www.uniprot.org entity_types: - type_name: protein type_id: PR:000000001 - id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z]([0-9][A-Z][A-Z0-9]{2}){1,2}[0-9])((-[0-9]+)|:PRO_[0-9]{10}|:VAR_[0-9]{6}){0,1} + id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z]([0-9][A-Z][A-Z0-9]{2}){1,2}[0-9])((-[0-9]+)|-PRO_[0-9]{10}|-VAR_[0-9]{6}){0,1} url_syntax: https://www.uniprot.org/uniprot/[example_id] example_id: UniProtKB:P51587 example_url: https://www.uniprot.org/uniprot/ @@ -2715,6 +2810,17 @@ id_syntax: UR[0-9]{9}|MF_[0-9]{5}|PIRNR[0-9]{6}|PRU[0-9]{5}|RU[0-9]{6} example_id: UniRule:UR000107224 example_url: https://www.uniprot.org/unirule/UR000107224 +- database: ARBA + name: ARBA machine learning models for automatic annotation of UniProtKB unreviewed entries + generic_urls: + - https://www.uniprot.org/arba/ + entity_types: + - type_name: entity + type_id: BET:0000000 + url_syntax: https://www.uniprot.org/arba/[example_id] + id_syntax: ARBA[0-9]{8} + example_id: ARBA:ARBA00000001 + example_url: https://www.uniprot.org/arba/ARBA00000001 - database: VZ name: ViralZone generic_urls: @@ -2729,7 +2835,7 @@ name: WormBase database of nematode biology synonyms: - WormBase - rdf_uri_prefix: https://identifiers.org/wb + rdf_uri_prefix: http://identifiers.org/wormbase/ generic_urls: - http://www.wormbase.org/ entity_types: @@ -2784,7 +2890,7 @@ url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WBbt:0005792 example_url: http://www.wormbase.org/get?name=WBbt:0005792 - - type_name: metazoan anatomical entity + - type_name: anatomical entity type_id: UBERON:0001062 id_syntax: '[0-9]{7}' url_syntax: http://www.wormbase.org/get?name=[example_id] @@ -2836,34 +2942,34 @@ example_url: https://en.wikipedia.org/w/index.php?title=Fallopian_tube&oldid=998395727 - database: Xenbase name: Xenbase - rdf_uri_prefix: https://identifiers.org/xenbase + rdf_uri_prefix: http://identifiers.org/xenbase/ generic_urls: - http://www.xenbase.org/ entity_types: - type_name: gene type_id: SO:0000704 id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ - url_syntax: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=[example_id] + url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-GENE-6255962 - example_url: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=XB-GENE-6255962 + example_url: http://www.xenbase.org/entry/XB-GENE-6255962 - type_name: morpholino oligo type_id: SO:0000034 id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ - url_syntax: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=[example_id] + url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-MORPHOLINO-17250301 - example_url: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=XB-MORPHOLINO-17250301 + example_url: http://www.xenbase.org/entry/XB-MORPHOLINO-17250301 - type_name: transgene type_id: SO:0000902 id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ - url_syntax: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=[example_id] + url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-TRANSGENE-17326811 - example_url: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=XB-TRANSGENE-17326811 + example_url: http://www.xenbase.org/entry/XB-TRANSGENE-17326811 - type_name: strain type_id: EFO:0005135 id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ - url_syntax: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=[example_id] + url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-LINE-1248 - example_url: http://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=XB-LINE-1248 + example_url: http://www.xenbase.org/entry/XB-LINE-1248 - database: YeastFunc name: Yeast Function generic_urls: @@ -2878,7 +2984,7 @@ - http://citgenedb.yubiolab.org - database: ZFIN name: Zebrafish Information Network - rdf_uri_prefix: https://identifiers.org/zfin + rdf_uri_prefix: http://identifiers.org/zfin/ generic_urls: - http://zfin.org/ entity_types: @@ -2921,24 +3027,24 @@ generic_urls: - https://www.animalgenome.org/QTLdb description: A database with curated publicly available trait mapping data (QTL and SNP associations) in livestock animal species. The link ID is called QTL_ID on QTLdb data dpownloads. - entity_types: + entity_types: - type_name: QTL type_id: QTL_ID:0000000 url_syntax: https://www.animalgenome.org/QTLdb/q?id=[example_id] id_syntax: \d+ - example_id: 23155 + example_id: Animal_QTLdb:23155 example_url: https://www.animalgenome.org/QTLdb/q?id=23155 - database: Animal_CorrDB name: CorrDB generic_urls: - https://www.animalgenome.org/CorrDB description: A database with curated publicly available trait correlation and inheritability data in livestock animal species. The link ID is called The link ID is called Corr_ID on CorrDB data downloads. - entity_types: + entity_types: - type_name: Correlation type_id: CorrID:000000 url_syntax: https://www.animalgenome.org/CorrDB/q/?id=[example_id] id_syntax: \d+ - example_id: 37232 + example_id: Animal_CorrDB:37232 example_url: https://www.animalgenome.org/CorrDB/q/?id=37232 - database: AlphaFold name: AlphaFold Protein Structure Database @@ -2947,7 +3053,7 @@ entity_types: - type_name: protein type_id: PR:000000001 - id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z]([0-9][A-Z][A-Z0-9]{2}){1,2}[0-9])((-[0-9]+)|:PRO_[0-9]{10}|:VAR_[0-9]{6}){0,1} + id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z]([0-9][A-Z][A-Z0-9]{2}){1,2}[0-9])((-[0-9]+)|-PRO_[0-9]{10}|-VAR_[0-9]{6}){0,1} url_syntax: https://alphafold.ebi.ac.uk/entry/[example_id] example_id: AlphaFold:Q5VSL9 example_url: https://alphafold.ebi.ac.uk/entry/Q5VSL9 @@ -2961,3 +3067,15 @@ url_syntax: https://www.japonicusdb.org/gene/[example_id] example_id: JaponicusDB:SJAG_01143 example_url: https://www.japonicusdb.org/gene/SJAG_01143 +- database: TreeGrafter + name: TreeGrafter-generated GO annotations + rdf_uri_prefix: http://identifiers.org/panther.family/ + generic_urls: + - http://www.pantherdb.org/ + entity_types: + - type_name: protein family + type_id: NCIT:C20130 + id_syntax: PTN[0-9]{9}|PTHR[0-9]{5}|PTHR[0-9]{5}:SF[0-9]+ + url_syntax: http://www.pantherdb.org/panther/lookupId.jsp?id=[example_id] + example_id: PANTHER:PTHR11455 + example_url: http://www.pantherdb.org/panther/lookupId.jsp?id=PTHR10000 From 5b38051d508bfb4acb9c6ef2a6a26ab506a54da1 Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Mon, 14 Oct 2024 13:48:14 -0700 Subject: [PATCH 3/4] prioritize pmid over pubmed for prefix resolution of ncbi pubmed identifiers based on resolution for GO --- tests/test_core/test_prefixmaps.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/tests/test_core/test_prefixmaps.py b/tests/test_core/test_prefixmaps.py index 909f97d..f943560 100644 --- a/tests/test_core/test_prefixmaps.py +++ b/tests/test_core/test_prefixmaps.py @@ -182,12 +182,10 @@ def test_from_upstream(self): self.assertEqual(pm[pfx], exp) self.assertEqual(pmi[exp], pfx) - # def test_meta(self): - # ctxts = load_contexts_meta() - # print(ctxts) def test_synonyms(self): - canonical = "PUBMED:1234" + # prefixmaps prioritizes GO prefix resolution over bioregistry in terms of adding canonical tags. + canonical = "PMID:1234" converter = prefixmaps.load_converter("merged") # TODO "pmid:1234", "pubmed:1234" others = ["PMID:1234", "MEDLINE:1234", canonical] From 34df55137549a05fc6bacb282aef74579081ded3 Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Mon, 14 Oct 2024 15:36:00 -0700 Subject: [PATCH 4/4] prioritize pmid over pubmed for prefix resolution of ncbi pubmed identifiers based on resolution for GO --- tests/test_core/test_prefixmaps.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/test_core/test_prefixmaps.py b/tests/test_core/test_prefixmaps.py index f943560..dc0db27 100644 --- a/tests/test_core/test_prefixmaps.py +++ b/tests/test_core/test_prefixmaps.py @@ -182,7 +182,6 @@ def test_from_upstream(self): self.assertEqual(pm[pfx], exp) self.assertEqual(pmi[exp], pfx) - def test_synonyms(self): # prefixmaps prioritizes GO prefix resolution over bioregistry in terms of adding canonical tags. canonical = "PMID:1234"