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[tool.poetry.dev-dependencies] pytest = ">=6.2" -linkml = ">=1.3.1" coverage = ">=6.4.4" typing-extensions = ">=4.4.0" diff --git a/src/prefixmaps/data/bioregistry.csv b/src/prefixmaps/data/bioregistry.csv index 1a8ffd4..71a0815 100644 --- a/src/prefixmaps/data/bioregistry.csv +++ b/src/prefixmaps/data/bioregistry.csv @@ -350,6 +350,7 @@ bioregistry,APOLLO_SV,https://bioregistry.io/apollosv:,prefix_alias bioregistry,APOLLO_SV,https://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias bioregistry,APOLLO_SV,https://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_,prefix_alias bioregistry,APOLLO_SV,https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias +bioregistry,apollosv,http://purl.obolibrary.org/obo/APOLLO_SV_,namespace_alias bioregistry,arachnoserver,http://identifiers.org/arachnoserver/,canonical bioregistry,arachnoserver,http://bio2rdf.org/arachnoserver:,prefix_alias bioregistry,arachnoserver,http://bioregistry.io/arachnoserver:,prefix_alias @@ -1416,6 +1417,10 @@ bioregistry,cbioportal,https://identifiers.org/cbioportal/,prefix_alias bioregistry,cbioportal,https://identifiers.org/cbioportal:,prefix_alias bioregistry,cbioportal,https://n2t.net/cbioportal:,prefix_alias bioregistry,cbioportal,https://www.cbioportal.org/study/summary?id=,prefix_alias +bioregistry,cc,https://creativecommons.org/ns#,canonical +bioregistry,cc,http://bioregistry.io/cc:,prefix_alias +bioregistry,cc,http://creativecommons.org/ns#,prefix_alias +bioregistry,cc,https://bioregistry.io/cc:,prefix_alias bioregistry,ccdc,http://identifiers.org/ccdc/,canonical bioregistry,ccdc,http://bioregistry.io/ccdc:,prefix_alias bioregistry,ccdc,http://identifiers.org/ccdc:,prefix_alias @@ -1844,6 +1849,7 @@ bioregistry,civic.vid,https://identifiers.org/civic.vid:,prefix_alias bioregistry,CL,http://purl.obolibrary.org/obo/CL_,canonical bioregistry,CL,http://bio2rdf.org/cl:,prefix_alias bioregistry,CL,http://bioregistry.io/CL:,prefix_alias +bioregistry,CL,http://cellxgene.cziscience.com/cellguide/CL_,prefix_alias bioregistry,CL,http://identifiers.org/CL/,prefix_alias bioregistry,CL,http://identifiers.org/CL:,prefix_alias bioregistry,CL,http://identifiers.org/cl/CL:,prefix_alias @@ -1853,6 +1859,7 @@ bioregistry,CL,http://purl.bioontology.org/ontology/CL/CL:,prefix_alias bioregistry,CL,http://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/CL_,prefix_alias bioregistry,CL,https://bio2rdf.org/cl:,prefix_alias bioregistry,CL,https://bioregistry.io/CL:,prefix_alias +bioregistry,CL,https://cellxgene.cziscience.com/cellguide/CL_,prefix_alias bioregistry,CL,https://identifiers.org/CL/,prefix_alias bioregistry,CL,https://identifiers.org/CL:,prefix_alias bioregistry,CL,https://identifiers.org/cl/CL:,prefix_alias @@ -4966,6 +4973,7 @@ bioregistry,gramene.gene,https://identifiers.org/gramene.gene/,prefix_alias bioregistry,gramene.gene,https://identifiers.org/gramene.gene:,prefix_alias bioregistry,gramene.gene,https://n2t.net/gramene.gene:,prefix_alias bioregistry,gramene.gene,https://www.gramene.org/db/genes/search_gene?acc=,prefix_alias +bioregistry,gramene.growthstage,http://purl.obolibrary.org/obo/GRO_,namespace_alias bioregistry,gramene.protein,http://identifiers.org/gramene.protein/,canonical bioregistry,gramene.protein,http://bioregistry.io/GR_PROTEIN:,prefix_alias bioregistry,gramene.protein,http://bioregistry.io/gramene.protein:,prefix_alias @@ -6090,11 +6098,13 @@ bioregistry,interlex,http://bioregistry.io/ILX:,prefix_alias bioregistry,interlex,http://bioregistry.io/interlex:,prefix_alias bioregistry,interlex,http://identifiers.org/ilx:,prefix_alias bioregistry,interlex,http://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias +bioregistry,interlex,http://uri.interlex.org/base/,prefix_alias bioregistry,interlex,https://bioregistry.io/ILX:,prefix_alias bioregistry,interlex,https://bioregistry.io/interlex:,prefix_alias bioregistry,interlex,https://identifiers.org/ilx/,prefix_alias bioregistry,interlex,https://identifiers.org/ilx:,prefix_alias bioregistry,interlex,https://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias +bioregistry,interlex,https://uri.interlex.org/base/,prefix_alias bioregistry,interpro,http://purl.obolibrary.org/obo/IPR_,canonical bioregistry,interpro,http://bio2rdf.org/interpro:,prefix_alias bioregistry,interpro,http://bioregistry.io/IP:,prefix_alias @@ -6875,6 +6885,14 @@ bioregistry,macie,https://identifiers.org/macie:,prefix_alias bioregistry,macie,https://n2t.net/macie:,prefix_alias bioregistry,macie,https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=,prefix_alias bioregistry,macie,https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/getPage.pl?id=,prefix_alias +bioregistry,maggot,http://identifiers.org/maggot/,canonical +bioregistry,maggot,http://bioregistry.io/maggot:,prefix_alias +bioregistry,maggot,http://identifiers.org/maggot:,prefix_alias +bioregistry,maggot,http://pmb-bordeaux.fr/maggot/metadata/,prefix_alias +bioregistry,maggot,https://bioregistry.io/maggot:,prefix_alias +bioregistry,maggot,https://identifiers.org/maggot/,prefix_alias +bioregistry,maggot,https://identifiers.org/maggot:,prefix_alias +bioregistry,maggot,https://pmb-bordeaux.fr/maggot/metadata/,prefix_alias bioregistry,MaizeGDB,http://identifiers.org/maizegdb.locus/,namespace_alias bioregistry,maizegdb.locus,http://identifiers.org/maizegdb.locus/,canonical bioregistry,maizegdb.locus,http://bio2rdf.org/maizegdb:,prefix_alias @@ -8185,6 +8203,7 @@ bioregistry,NCBIGene,http://bioregistry.io/ctd.gene:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/entrez gene/locuslink:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/entrez:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/genewiki:,prefix_alias +bioregistry,NCBIGene,http://bioregistry.io/nihgeneid:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/wikigenes:,prefix_alias bioregistry,NCBIGene,http://ctdbase.org/detail.go?type=gene&acc=,prefix_alias bioregistry,NCBIGene,http://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias @@ -8214,6 +8233,7 @@ bioregistry,NCBIGene,https://bioregistry.io/ctd.gene:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/entrez gene/locuslink:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/entrez:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/genewiki:,prefix_alias +bioregistry,NCBIGene,https://bioregistry.io/nihgeneid:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/wikigenes:,prefix_alias bioregistry,NCBIGene,https://ctdbase.org/detail.go?type=gene&acc=,prefix_alias bioregistry,NCBIGene,https://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias @@ -8560,12 +8580,15 @@ bioregistry,niaest,https://identifiers.org/niaest/,prefix_alias bioregistry,niaest,https://identifiers.org/niaest:,prefix_alias bioregistry,niaest,https://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=,prefix_alias bioregistry,niaest,https://n2t.net/niaest:,prefix_alias +bioregistry,nif.cell,http://purl.obolibrary.org/obo/NIF_CELL_,namespace_alias +bioregistry,nif.dysfunction,http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_,namespace_alias bioregistry,nif.ext,http://uri.neuinfo.org/nif/nifstd/nifext_,canonical bioregistry,nif.ext,http://bioregistry.io/NIFEXT:,prefix_alias bioregistry,nif.ext,http://bioregistry.io/nif.ext:,prefix_alias bioregistry,nif.ext,https://bioregistry.io/NIFEXT:,prefix_alias bioregistry,nif.ext,https://bioregistry.io/nif.ext:,prefix_alias bioregistry,nif.ext,https://uri.neuinfo.org/nif/nifstd/nifext_,prefix_alias +bioregistry,nif.grossanatomy,http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_,namespace_alias bioregistry,nif.std,http://uri.neuinfo.org/nif/nifstd/,canonical bioregistry,nif.std,http://bioregistry.io/NIFSTD:,prefix_alias bioregistry,nif.std,http://bioregistry.io/nif.std:,prefix_alias @@ -8593,6 +8616,7 @@ bioregistry,NIF_GROSSANATOMY,https://purl.obolibrary.org/obo/NIF_GROSSANATOMY_,p bioregistry,nif_subcellular,http://uri.neuinfo.org/nif/nifstd/nlx_subcell_,namespace_alias bioregistry,NIFEXT,http://uri.neuinfo.org/nif/nifstd/nifext_,namespace_alias bioregistry,NIFSTD,http://uri.neuinfo.org/nif/nifstd/,namespace_alias +bioregistry,nihgeneid,http://identifiers.org/ncbigene/,namespace_alias bioregistry,nihreporter.project,https://reporter.nih.gov/project-details/,canonical bioregistry,nihreporter.project,http://bioregistry.io/nihreporter.project:,prefix_alias bioregistry,nihreporter.project,http://reporter.nih.gov/project-details/,prefix_alias @@ -9227,6 +9251,10 @@ bioregistry,openalex,https://openalex.org/,canonical bioregistry,openalex,http://bioregistry.io/openalex:,prefix_alias bioregistry,openalex,http://openalex.org/,prefix_alias bioregistry,openalex,https://bioregistry.io/openalex:,prefix_alias +bioregistry,openwemi,https://dcmi.github.io/openwemi/ns#,canonical +bioregistry,openwemi,http://bioregistry.io/openwemi:,prefix_alias +bioregistry,openwemi,http://dcmi.github.io/openwemi/ns#,prefix_alias +bioregistry,openwemi,https://bioregistry.io/openwemi:,prefix_alias bioregistry,OPL,http://purl.obolibrary.org/obo/OPL_,canonical bioregistry,OPL,http://bioregistry.io/OPL:,prefix_alias bioregistry,OPL,http://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_,prefix_alias @@ -10822,6 +10850,10 @@ bioregistry,rdf,http://www.w3.org/1999/02/22-rdf-syntax-ns#,canonical bioregistry,rdf,http://bioregistry.io/rdf:,prefix_alias bioregistry,rdf,https://bioregistry.io/rdf:,prefix_alias bioregistry,rdf,https://www.w3.org/1999/02/22-rdf-syntax-ns#,prefix_alias +bioregistry,rdfa,http://www.w3.org/ns/rdfa#,canonical +bioregistry,rdfa,http://bioregistry.io/rdfa:,prefix_alias +bioregistry,rdfa,https://bioregistry.io/rdfa:,prefix_alias +bioregistry,rdfa,https://www.w3.org/ns/rdfa#,prefix_alias bioregistry,rdfs,http://www.w3.org/2000/01/rdf-schema#,canonical bioregistry,rdfs,http://bioregistry.io/rdfs:,prefix_alias bioregistry,rdfs,https://bioregistry.io/rdfs:,prefix_alias @@ -12341,6 +12373,14 @@ bioregistry,treefam,https://identifiers.org/treefam:,prefix_alias bioregistry,treefam,https://n2t.net/treefam:,prefix_alias bioregistry,treefam,https://www.treefam.org/cgi-bin/TFinfo.pl?ac=,prefix_alias bioregistry,treefam,https://www.treefam.org/family/,prefix_alias +bioregistry,tricdb,http://identifiers.org/tricdb/,canonical +bioregistry,tricdb,http://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias +bioregistry,tricdb,http://bioregistry.io/tricdb:,prefix_alias +bioregistry,tricdb,http://identifiers.org/tricdb:,prefix_alias +bioregistry,tricdb,https://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias +bioregistry,tricdb,https://bioregistry.io/tricdb:,prefix_alias +bioregistry,tricdb,https://identifiers.org/tricdb/,prefix_alias +bioregistry,tricdb,https://identifiers.org/tricdb:,prefix_alias bioregistry,trichdb,http://identifiers.org/trichdb/,canonical bioregistry,trichdb,http://bioregistry.io/trichdb:,prefix_alias bioregistry,trichdb,http://identifiers.org/trichdb:,prefix_alias @@ -12402,6 +12442,7 @@ bioregistry,Uber-anatomy ontology,http://purl.obolibrary.org/obo/UBERON_,namespa bioregistry,UBERON,http://purl.obolibrary.org/obo/UBERON_,canonical bioregistry,UBERON,http://bioregistry.io/UBERON:,prefix_alias bioregistry,UBERON,http://bioregistry.io/Uber-anatomy ontology:,prefix_alias +bioregistry,UBERON,http://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias bioregistry,UBERON,http://identifiers.org/UBERON/,prefix_alias bioregistry,UBERON,http://identifiers.org/UBERON:,prefix_alias bioregistry,UBERON,http://identifiers.org/uberon/UBERON:,prefix_alias @@ -12412,6 +12453,7 @@ bioregistry,UBERON,http://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://p bioregistry,UBERON,http://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:,prefix_alias bioregistry,UBERON,https://bioregistry.io/UBERON:,prefix_alias bioregistry,UBERON,https://bioregistry.io/Uber-anatomy ontology:,prefix_alias +bioregistry,UBERON,https://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias bioregistry,UBERON,https://identifiers.org/UBERON/,prefix_alias bioregistry,UBERON,https://identifiers.org/UBERON:,prefix_alias bioregistry,UBERON,https://identifiers.org/uberon/UBERON:,prefix_alias diff --git a/src/prefixmaps/data/bioregistry.upper.csv b/src/prefixmaps/data/bioregistry.upper.csv index aca20a4..805e229 100644 --- a/src/prefixmaps/data/bioregistry.upper.csv +++ b/src/prefixmaps/data/bioregistry.upper.csv @@ -350,6 +350,7 @@ bioregistry,APOLLO_SV,https://bioregistry.io/apollosv:,prefix_alias bioregistry,APOLLO_SV,https://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias bioregistry,APOLLO_SV,https://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_,prefix_alias bioregistry,APOLLO_SV,https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias +bioregistry,apollosv,http://purl.obolibrary.org/obo/APOLLO_SV_,namespace_alias bioregistry,ARACHNOSERVER,http://identifiers.org/arachnoserver/,canonical bioregistry,ARACHNOSERVER,http://bio2rdf.org/arachnoserver:,prefix_alias bioregistry,ARACHNOSERVER,http://bioregistry.io/arachnoserver:,prefix_alias @@ -1416,6 +1417,10 @@ bioregistry,CBIOPORTAL,https://identifiers.org/cbioportal/,prefix_alias bioregistry,CBIOPORTAL,https://identifiers.org/cbioportal:,prefix_alias bioregistry,CBIOPORTAL,https://n2t.net/cbioportal:,prefix_alias bioregistry,CBIOPORTAL,https://www.cbioportal.org/study/summary?id=,prefix_alias +bioregistry,CC,https://creativecommons.org/ns#,canonical +bioregistry,CC,http://bioregistry.io/cc:,prefix_alias +bioregistry,CC,http://creativecommons.org/ns#,prefix_alias +bioregistry,CC,https://bioregistry.io/cc:,prefix_alias bioregistry,CCDC,http://identifiers.org/ccdc/,canonical bioregistry,CCDC,http://bioregistry.io/ccdc:,prefix_alias bioregistry,CCDC,http://identifiers.org/ccdc:,prefix_alias @@ -1844,6 +1849,7 @@ bioregistry,CIVIC.VID,https://identifiers.org/civic.vid:,prefix_alias bioregistry,CL,http://purl.obolibrary.org/obo/CL_,canonical bioregistry,CL,http://bio2rdf.org/cl:,prefix_alias bioregistry,CL,http://bioregistry.io/CL:,prefix_alias +bioregistry,CL,http://cellxgene.cziscience.com/cellguide/CL_,prefix_alias bioregistry,CL,http://identifiers.org/CL/,prefix_alias bioregistry,CL,http://identifiers.org/CL:,prefix_alias bioregistry,CL,http://identifiers.org/cl/CL:,prefix_alias @@ -1853,6 +1859,7 @@ bioregistry,CL,http://purl.bioontology.org/ontology/CL/CL:,prefix_alias bioregistry,CL,http://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/CL_,prefix_alias bioregistry,CL,https://bio2rdf.org/cl:,prefix_alias bioregistry,CL,https://bioregistry.io/CL:,prefix_alias +bioregistry,CL,https://cellxgene.cziscience.com/cellguide/CL_,prefix_alias bioregistry,CL,https://identifiers.org/CL/,prefix_alias bioregistry,CL,https://identifiers.org/CL:,prefix_alias bioregistry,CL,https://identifiers.org/cl/CL:,prefix_alias @@ -4966,6 +4973,7 @@ bioregistry,GRAMENE.GENE,https://identifiers.org/gramene.gene/,prefix_alias bioregistry,GRAMENE.GENE,https://identifiers.org/gramene.gene:,prefix_alias bioregistry,GRAMENE.GENE,https://n2t.net/gramene.gene:,prefix_alias bioregistry,GRAMENE.GENE,https://www.gramene.org/db/genes/search_gene?acc=,prefix_alias +bioregistry,GRAMENE.GROWTHSTAGE,http://purl.obolibrary.org/obo/GRO_,namespace_alias bioregistry,GRAMENE.PROTEIN,http://identifiers.org/gramene.protein/,canonical bioregistry,GRAMENE.PROTEIN,http://bioregistry.io/GR_PROTEIN:,prefix_alias bioregistry,GRAMENE.PROTEIN,http://bioregistry.io/gramene.protein:,prefix_alias @@ -6090,11 +6098,13 @@ bioregistry,INTERLEX,http://bioregistry.io/ILX:,prefix_alias bioregistry,INTERLEX,http://bioregistry.io/interlex:,prefix_alias bioregistry,INTERLEX,http://identifiers.org/ilx:,prefix_alias bioregistry,INTERLEX,http://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias +bioregistry,INTERLEX,http://uri.interlex.org/base/,prefix_alias bioregistry,INTERLEX,https://bioregistry.io/ILX:,prefix_alias bioregistry,INTERLEX,https://bioregistry.io/interlex:,prefix_alias bioregistry,INTERLEX,https://identifiers.org/ilx/,prefix_alias bioregistry,INTERLEX,https://identifiers.org/ilx:,prefix_alias bioregistry,INTERLEX,https://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias +bioregistry,INTERLEX,https://uri.interlex.org/base/,prefix_alias bioregistry,interpro,http://purl.obolibrary.org/obo/IPR_,canonical bioregistry,interpro,http://bio2rdf.org/interpro:,prefix_alias bioregistry,interpro,http://bioregistry.io/IP:,prefix_alias @@ -6875,6 +6885,14 @@ bioregistry,MACIE,https://identifiers.org/macie:,prefix_alias bioregistry,MACIE,https://n2t.net/macie:,prefix_alias bioregistry,MACIE,https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=,prefix_alias bioregistry,MACIE,https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/getPage.pl?id=,prefix_alias +bioregistry,MAGGOT,http://identifiers.org/maggot/,canonical +bioregistry,MAGGOT,http://bioregistry.io/maggot:,prefix_alias +bioregistry,MAGGOT,http://identifiers.org/maggot:,prefix_alias +bioregistry,MAGGOT,http://pmb-bordeaux.fr/maggot/metadata/,prefix_alias +bioregistry,MAGGOT,https://bioregistry.io/maggot:,prefix_alias +bioregistry,MAGGOT,https://identifiers.org/maggot/,prefix_alias +bioregistry,MAGGOT,https://identifiers.org/maggot:,prefix_alias +bioregistry,MAGGOT,https://pmb-bordeaux.fr/maggot/metadata/,prefix_alias bioregistry,MAIZEGDB,http://identifiers.org/maizegdb.locus/,namespace_alias bioregistry,MAIZEGDB.LOCUS,http://identifiers.org/maizegdb.locus/,canonical bioregistry,MAIZEGDB.LOCUS,http://bio2rdf.org/maizegdb:,prefix_alias @@ -8185,6 +8203,7 @@ bioregistry,NCBIGene,http://bioregistry.io/ctd.gene:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/entrez gene/locuslink:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/entrez:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/genewiki:,prefix_alias +bioregistry,NCBIGene,http://bioregistry.io/nihgeneid:,prefix_alias bioregistry,NCBIGene,http://bioregistry.io/wikigenes:,prefix_alias bioregistry,NCBIGene,http://ctdbase.org/detail.go?type=gene&acc=,prefix_alias bioregistry,NCBIGene,http://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias @@ -8214,6 +8233,7 @@ bioregistry,NCBIGene,https://bioregistry.io/ctd.gene:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/entrez gene/locuslink:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/entrez:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/genewiki:,prefix_alias +bioregistry,NCBIGene,https://bioregistry.io/nihgeneid:,prefix_alias bioregistry,NCBIGene,https://bioregistry.io/wikigenes:,prefix_alias bioregistry,NCBIGene,https://ctdbase.org/detail.go?type=gene&acc=,prefix_alias bioregistry,NCBIGene,https://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias @@ -8560,12 +8580,15 @@ bioregistry,NIAEST,https://identifiers.org/niaest/,prefix_alias bioregistry,NIAEST,https://identifiers.org/niaest:,prefix_alias bioregistry,NIAEST,https://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=,prefix_alias bioregistry,NIAEST,https://n2t.net/niaest:,prefix_alias +bioregistry,nif.cell,http://purl.obolibrary.org/obo/NIF_CELL_,namespace_alias +bioregistry,nif.dysfunction,http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_,namespace_alias bioregistry,NIF.EXT,http://uri.neuinfo.org/nif/nifstd/nifext_,canonical bioregistry,NIF.EXT,http://bioregistry.io/NIFEXT:,prefix_alias bioregistry,NIF.EXT,http://bioregistry.io/nif.ext:,prefix_alias bioregistry,NIF.EXT,https://bioregistry.io/NIFEXT:,prefix_alias bioregistry,NIF.EXT,https://bioregistry.io/nif.ext:,prefix_alias bioregistry,NIF.EXT,https://uri.neuinfo.org/nif/nifstd/nifext_,prefix_alias +bioregistry,nif.grossanatomy,http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_,namespace_alias bioregistry,NIF.STD,http://uri.neuinfo.org/nif/nifstd/,canonical bioregistry,NIF.STD,http://bioregistry.io/NIFSTD:,prefix_alias bioregistry,NIF.STD,http://bioregistry.io/nif.std:,prefix_alias @@ -8593,6 +8616,7 @@ bioregistry,NIF_GROSSANATOMY,https://purl.obolibrary.org/obo/NIF_GROSSANATOMY_,p bioregistry,NIF_SUBCELLULAR,http://uri.neuinfo.org/nif/nifstd/nlx_subcell_,namespace_alias bioregistry,NIFEXT,http://uri.neuinfo.org/nif/nifstd/nifext_,namespace_alias bioregistry,NIFSTD,http://uri.neuinfo.org/nif/nifstd/,namespace_alias +bioregistry,nihgeneid,http://identifiers.org/ncbigene/,namespace_alias bioregistry,NIHREPORTER.PROJECT,https://reporter.nih.gov/project-details/,canonical bioregistry,NIHREPORTER.PROJECT,http://bioregistry.io/nihreporter.project:,prefix_alias bioregistry,NIHREPORTER.PROJECT,http://reporter.nih.gov/project-details/,prefix_alias @@ -9227,6 +9251,10 @@ bioregistry,OPENALEX,https://openalex.org/,canonical bioregistry,OPENALEX,http://bioregistry.io/openalex:,prefix_alias bioregistry,OPENALEX,http://openalex.org/,prefix_alias bioregistry,OPENALEX,https://bioregistry.io/openalex:,prefix_alias +bioregistry,OPENWEMI,https://dcmi.github.io/openwemi/ns#,canonical +bioregistry,OPENWEMI,http://bioregistry.io/openwemi:,prefix_alias +bioregistry,OPENWEMI,http://dcmi.github.io/openwemi/ns#,prefix_alias +bioregistry,OPENWEMI,https://bioregistry.io/openwemi:,prefix_alias bioregistry,OPL,http://purl.obolibrary.org/obo/OPL_,canonical bioregistry,OPL,http://bioregistry.io/OPL:,prefix_alias bioregistry,OPL,http://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_,prefix_alias @@ -10822,6 +10850,10 @@ bioregistry,RDF,http://www.w3.org/1999/02/22-rdf-syntax-ns#,canonical bioregistry,RDF,http://bioregistry.io/rdf:,prefix_alias bioregistry,RDF,https://bioregistry.io/rdf:,prefix_alias bioregistry,RDF,https://www.w3.org/1999/02/22-rdf-syntax-ns#,prefix_alias +bioregistry,RDFA,http://www.w3.org/ns/rdfa#,canonical +bioregistry,RDFA,http://bioregistry.io/rdfa:,prefix_alias +bioregistry,RDFA,https://bioregistry.io/rdfa:,prefix_alias +bioregistry,RDFA,https://www.w3.org/ns/rdfa#,prefix_alias bioregistry,RDFS,http://www.w3.org/2000/01/rdf-schema#,canonical bioregistry,RDFS,http://bioregistry.io/rdfs:,prefix_alias bioregistry,RDFS,https://bioregistry.io/rdfs:,prefix_alias @@ -12341,6 +12373,14 @@ bioregistry,TREEFAM,https://identifiers.org/treefam:,prefix_alias bioregistry,TREEFAM,https://n2t.net/treefam:,prefix_alias bioregistry,TREEFAM,https://www.treefam.org/cgi-bin/TFinfo.pl?ac=,prefix_alias bioregistry,TREEFAM,https://www.treefam.org/family/,prefix_alias +bioregistry,TRICDB,http://identifiers.org/tricdb/,canonical +bioregistry,TRICDB,http://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias +bioregistry,TRICDB,http://bioregistry.io/tricdb:,prefix_alias +bioregistry,TRICDB,http://identifiers.org/tricdb:,prefix_alias +bioregistry,TRICDB,https://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias +bioregistry,TRICDB,https://bioregistry.io/tricdb:,prefix_alias +bioregistry,TRICDB,https://identifiers.org/tricdb/,prefix_alias +bioregistry,TRICDB,https://identifiers.org/tricdb:,prefix_alias bioregistry,TRICHDB,http://identifiers.org/trichdb/,canonical bioregistry,TRICHDB,http://bioregistry.io/trichdb:,prefix_alias bioregistry,TRICHDB,http://identifiers.org/trichdb:,prefix_alias @@ -12402,6 +12442,7 @@ bioregistry,Uber-anatomy ontology,http://purl.obolibrary.org/obo/UBERON_,namespa bioregistry,UBERON,http://purl.obolibrary.org/obo/UBERON_,canonical bioregistry,UBERON,http://bioregistry.io/UBERON:,prefix_alias bioregistry,UBERON,http://bioregistry.io/Uber-anatomy ontology:,prefix_alias +bioregistry,UBERON,http://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias bioregistry,UBERON,http://identifiers.org/UBERON/,prefix_alias bioregistry,UBERON,http://identifiers.org/UBERON:,prefix_alias bioregistry,UBERON,http://identifiers.org/uberon/UBERON:,prefix_alias @@ -12412,6 +12453,7 @@ bioregistry,UBERON,http://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://p bioregistry,UBERON,http://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:,prefix_alias bioregistry,UBERON,https://bioregistry.io/UBERON:,prefix_alias bioregistry,UBERON,https://bioregistry.io/Uber-anatomy ontology:,prefix_alias +bioregistry,UBERON,https://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias bioregistry,UBERON,https://identifiers.org/UBERON/,prefix_alias bioregistry,UBERON,https://identifiers.org/UBERON:,prefix_alias bioregistry,UBERON,https://identifiers.org/uberon/UBERON:,prefix_alias diff --git a/src/prefixmaps/data/merged.csv b/src/prefixmaps/data/merged.csv index 1e4c9bd..e19d3b0 100644 --- a/src/prefixmaps/data/merged.csv +++ b/src/prefixmaps/data/merged.csv @@ -433,6 +433,7 @@ merged,APOLLO_SV,https://bioregistry.io/apollosv:,prefix_alias,bioregistry merged,APOLLO_SV,https://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias,bioregistry merged,APOLLO_SV,https://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_,prefix_alias,bioregistry merged,APOLLO_SV,https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias,bioregistry +merged,apollosv,http://purl.obolibrary.org/obo/APOLLO_SV_,namespace_alias,bioregistry merged,app,http://jmvanel.free.fr/ontology/software_applications.n3#,canonical,prefixcc merged,aprov,http://purl.org/a-proc#,canonical,prefixcc merged,ARACHNOSERVER,http://identifiers.org/arachnoserver/,canonical,bioregistry @@ -1678,7 +1679,10 @@ merged,CBIOPORTAL,https://www.cbioportal.org/study/summary?id=,prefix_alias,bior merged,cbo,http://comicmeta.org/cbo/,canonical,prefixcc merged,cbs,http://betalinkeddata.cbs.nl/def/cbs#,canonical,prefixcc merged,cbv,https://ns.gs1.org/cbv/,canonical,prefixcc -merged,cc,http://creativecommons.org/ns#,canonical,prefixcc +merged,CC,https://creativecommons.org/ns#,canonical,bioregistry +merged,CC,http://bioregistry.io/cc:,prefix_alias,bioregistry +merged,CC,http://creativecommons.org/ns#,prefix_alias,bioregistry +merged,CC,https://bioregistry.io/cc:,prefix_alias,bioregistry merged,ccard,http://purl.org/commerce/creditcard#,canonical,prefixcc merged,CCDC,http://identifiers.org/ccdc/,canonical,bioregistry merged,CCDC,http://bioregistry.io/ccdc:,prefix_alias,bioregistry @@ -2159,6 +2163,7 @@ merged,cjr,http://vocab.linkeddata.es/datosabiertos/def/urbanismo-infraestructur merged,CL,http://purl.obolibrary.org/obo/CL_,canonical,obo merged,CL,http://bio2rdf.org/cl:,prefix_alias,bioregistry merged,CL,http://bioregistry.io/CL:,prefix_alias,bioregistry +merged,CL,http://cellxgene.cziscience.com/cellguide/CL_,prefix_alias,bioregistry merged,CL,http://identifiers.org/CL/,prefix_alias,bioregistry merged,CL,http://identifiers.org/CL:,prefix_alias,bioregistry merged,CL,http://identifiers.org/cl/CL:,prefix_alias,bioregistry @@ -2168,6 +2173,7 @@ merged,CL,http://purl.bioontology.org/ontology/CL/CL:,prefix_alias,bioregistry merged,CL,http://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/CL_,prefix_alias,bioregistry merged,CL,https://bio2rdf.org/cl:,prefix_alias,bioregistry merged,CL,https://bioregistry.io/CL:,prefix_alias,bioregistry +merged,CL,https://cellxgene.cziscience.com/cellguide/CL_,prefix_alias,bioregistry merged,CL,https://identifiers.org/CL/,prefix_alias,bioregistry merged,CL,https://identifiers.org/CL:,prefix_alias,bioregistry merged,CL,https://identifiers.org/cl/CL:,prefix_alias,bioregistry @@ -5489,7 +5495,7 @@ merged,GIARDIADB,https://giardiadb.org/giardiadb/showRecord.do?name=GeneRecordCl merged,GIARDIADB,https://identifiers.org/giardiadb/,prefix_alias,bioregistry merged,GIARDIADB,https://identifiers.org/giardiadb:,prefix_alias,bioregistry merged,GIARDIADB,https://n2t.net/giardiadb:,prefix_alias,bioregistry -merged,gist,http://ontologies.semanticarts.com/gist#,canonical,prefixcc +merged,gist,https://ontologies.semanticarts.com/o/gistCore#,canonical,prefixcc merged,GITHUB,http://identifiers.org/github/,canonical,bioregistry merged,GITHUB,http://bioregistry.io/github:,prefix_alias,bioregistry merged,GITHUB,http://github.com/,prefix_alias,bioregistry @@ -5904,6 +5910,7 @@ merged,GRAMENE.GENE,https://identifiers.org/gramene.gene:,prefix_alias,bioregist merged,GRAMENE.GENE,https://n2t.net/gramene.gene:,prefix_alias,bioregistry merged,GRAMENE.GENE,https://www.gramene.org/db/genes/search_gene?acc=,prefix_alias,bioregistry merged,GRAMENE.GENE,http://identifiers.org/gramene.gene/,namespace_alias,bioregistry +merged,GRAMENE.GROWTHSTAGE,http://purl.obolibrary.org/obo/GRO_,namespace_alias,bioregistry merged,GRAMENE.PROTEIN,http://bioregistry.io/GR_PROTEIN:,prefix_alias,bioregistry merged,GRAMENE.PROTEIN,http://bioregistry.io/gramene.protein:,prefix_alias,bioregistry merged,GRAMENE.PROTEIN,http://identifiers.org/gramene.protein:,prefix_alias,bioregistry @@ -7152,11 +7159,13 @@ merged,INTERLEX,http://bioregistry.io/ILX:,prefix_alias,bioregistry merged,INTERLEX,http://bioregistry.io/interlex:,prefix_alias,bioregistry merged,INTERLEX,http://identifiers.org/ilx:,prefix_alias,bioregistry merged,INTERLEX,http://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias,bioregistry +merged,INTERLEX,http://uri.interlex.org/base/,prefix_alias,bioregistry merged,INTERLEX,https://bioregistry.io/ILX:,prefix_alias,bioregistry merged,INTERLEX,https://bioregistry.io/interlex:,prefix_alias,bioregistry merged,INTERLEX,https://identifiers.org/ilx/,prefix_alias,bioregistry merged,INTERLEX,https://identifiers.org/ilx:,prefix_alias,bioregistry merged,INTERLEX,https://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias,bioregistry +merged,INTERLEX,https://uri.interlex.org/base/,prefix_alias,bioregistry merged,interop,http://www.w3.org/ns/solid/interop#,canonical,prefixcc merged,InterPro,https://registry.identifiers.org/registry/interpro/,canonical,go merged,interpro,http://bio2rdf.org/interpro:,prefix_alias,bioregistry @@ -8190,6 +8199,14 @@ merged,maeco,http://edg.topbraid.solutions/maeco/,canonical,prefixcc merged,maeo,http://emmo.info/emmo/application/maeo/experts#,namespace_alias,prefixcc merged,maet,http://edg.topbraid.solutions/taxonomy/macroeconomics/,canonical,prefixcc merged,mag,https://makg.org/property/,canonical,prefixcc +merged,MAGGOT,http://identifiers.org/maggot/,canonical,bioregistry +merged,MAGGOT,http://bioregistry.io/maggot:,prefix_alias,bioregistry +merged,MAGGOT,http://identifiers.org/maggot:,prefix_alias,bioregistry +merged,MAGGOT,http://pmb-bordeaux.fr/maggot/metadata/,prefix_alias,bioregistry +merged,MAGGOT,https://bioregistry.io/maggot:,prefix_alias,bioregistry +merged,MAGGOT,https://identifiers.org/maggot/,prefix_alias,bioregistry +merged,MAGGOT,https://identifiers.org/maggot:,prefix_alias,bioregistry +merged,MAGGOT,https://pmb-bordeaux.fr/maggot/metadata/,prefix_alias,bioregistry merged,magmardl,http://www.semanticweb.org/magma-core/rdl#,canonical,prefixcc merged,magmauser,http://www.semanticweb.org/magma-core/user#,canonical,prefixcc merged,MAIZEGDB,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry @@ -9642,6 +9659,7 @@ merged,NCBIGene,http://bioregistry.io/ctd.gene:,prefix_alias,bioregistry merged,NCBIGene,http://bioregistry.io/entrez gene/locuslink:,prefix_alias,bioregistry merged,NCBIGene,http://bioregistry.io/entrez:,prefix_alias,bioregistry merged,NCBIGene,http://bioregistry.io/genewiki:,prefix_alias,bioregistry +merged,NCBIGene,http://bioregistry.io/nihgeneid:,prefix_alias,bioregistry merged,NCBIGene,http://bioregistry.io/wikigenes:,prefix_alias,bioregistry merged,NCBIGene,http://ctdbase.org/detail.go?type=gene&acc=,prefix_alias,bioregistry merged,NCBIGene,http://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias,bioregistry @@ -9671,6 +9689,7 @@ merged,NCBIGene,https://bioregistry.io/ctd.gene:,prefix_alias,bioregistry merged,NCBIGene,https://bioregistry.io/entrez gene/locuslink:,prefix_alias,bioregistry merged,NCBIGene,https://bioregistry.io/entrez:,prefix_alias,bioregistry merged,NCBIGene,https://bioregistry.io/genewiki:,prefix_alias,bioregistry +merged,NCBIGene,https://bioregistry.io/nihgeneid:,prefix_alias,bioregistry merged,NCBIGene,https://bioregistry.io/wikigenes:,prefix_alias,bioregistry merged,NCBIGene,https://ctdbase.org/detail.go?type=gene&acc=,prefix_alias,bioregistry merged,NCBIGene,https://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias,bioregistry @@ -10037,12 +10056,15 @@ merged,nid3,http://www.semanticdesktop.org/ontologies/2007/05/10/nid3#,canonical merged,nidm,http://nidm.nidash.org/,canonical,prefixcc merged,nie,http://www.semanticdesktop.org/ontologies/2007/01/19/nie#,canonical,prefixcc merged,nif,http://persistence.uni-leipzig.org/nlp2rdf/ontologies/nif-core#,canonical,prefixcc +merged,nif.cell,http://purl.obolibrary.org/obo/NIF_CELL_,namespace_alias,bioregistry +merged,nif.dysfunction,http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_,namespace_alias,bioregistry merged,NIF.EXT,http://uri.neuinfo.org/nif/nifstd/nifext_,canonical,bioregistry merged,NIF.EXT,http://bioregistry.io/NIFEXT:,prefix_alias,bioregistry merged,NIF.EXT,http://bioregistry.io/nif.ext:,prefix_alias,bioregistry merged,NIF.EXT,https://bioregistry.io/NIFEXT:,prefix_alias,bioregistry merged,NIF.EXT,https://bioregistry.io/nif.ext:,prefix_alias,bioregistry merged,NIF.EXT,https://uri.neuinfo.org/nif/nifstd/nifext_,prefix_alias,bioregistry +merged,nif.grossanatomy,http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_,namespace_alias,bioregistry merged,NIF.STD,http://uri.neuinfo.org/nif/nifstd/,canonical,bioregistry merged,NIF.STD,http://bioregistry.io/NIFSTD:,prefix_alias,bioregistry merged,NIF.STD,http://bioregistry.io/nif.std:,prefix_alias,bioregistry @@ -10071,6 +10093,7 @@ merged,NIF_SUBCELLULAR,http://uri.neuinfo.org/nif/nifstd/nlx_subcell_,namespace_ merged,NIFEXT,http://uri.neuinfo.org/nif/nifstd/nifext_,namespace_alias,bioregistry merged,NIFSTD,http://uri.neuinfo.org/nif/nifstd/,namespace_alias,bioregistry merged,nih,http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#,namespace_alias,prefixcc +merged,nihgeneid,http://identifiers.org/ncbigene/,namespace_alias,bioregistry merged,NIHREPORTER.PROJECT,https://reporter.nih.gov/project-details/,canonical,bioregistry merged,NIHREPORTER.PROJECT,http://bioregistry.io/nihreporter.project:,prefix_alias,bioregistry merged,NIHREPORTER.PROJECT,http://reporter.nih.gov/project-details/,prefix_alias,bioregistry @@ -10861,6 +10884,10 @@ merged,opengov,http://www.w3.org/opengov#,canonical,prefixcc merged,openlinks,http://www.openlinksw.com/schemas/virtrdf#,canonical,prefixcc merged,opensearch,http://a9.com/-/spec/opensearch/1.1/,canonical,prefixcc merged,openskos,http://openskos.org/xmlns#,canonical,prefixcc +merged,OPENWEMI,https://dcmi.github.io/openwemi/ns#,canonical,bioregistry +merged,OPENWEMI,http://bioregistry.io/openwemi:,prefix_alias,bioregistry +merged,OPENWEMI,http://dcmi.github.io/openwemi/ns#,prefix_alias,bioregistry +merged,OPENWEMI,https://bioregistry.io/openwemi:,prefix_alias,bioregistry merged,oper,http://sweet.jpl.nasa.gov/2.0/mathOperation.owl#,canonical,prefixcc merged,OPL,http://purl.obolibrary.org/obo/OPL_,canonical,obo merged,OPL,http://bioregistry.io/OPL:,prefix_alias,bioregistry @@ -12851,7 +12878,10 @@ merged,RDF,http://bioregistry.io/rdf:,prefix_alias,bioregistry merged,RDF,https://bioregistry.io/rdf:,prefix_alias,bioregistry merged,RDF,https://www.w3.org/1999/02/22-rdf-syntax-ns#,prefix_alias,bioregistry merged,rdf123,http://rdf123.umbc.edu/ns/,canonical,prefixcc -merged,rdfa,http://www.w3.org/ns/rdfa#,canonical,prefixcc +merged,RDFA,http://www.w3.org/ns/rdfa#,canonical,bioregistry +merged,RDFA,http://bioregistry.io/rdfa:,prefix_alias,bioregistry +merged,RDFA,https://bioregistry.io/rdfa:,prefix_alias,bioregistry +merged,RDFA,https://www.w3.org/ns/rdfa#,prefix_alias,bioregistry merged,rdfdata,http://rdf.data-vocabulary.org/rdf.xml#,canonical,prefixcc merged,rdfdf,http://www.openlinksw.com/virtrdf-data-formats#,canonical,prefixcc merged,rdfg,http://www.w3.org/2004/03/trix/rdfg-1/,canonical,prefixcc @@ -15005,6 +15035,14 @@ merged,TREEFAM,https://n2t.net/treefam:,prefix_alias,bioregistry merged,TREEFAM,https://www.treefam.org/cgi-bin/TFinfo.pl?ac=,prefix_alias,bioregistry merged,TREEFAM,https://www.treefam.org/family/,prefix_alias,bioregistry merged,trek,https://w3id.org/trek/,canonical,prefixcc +merged,TRICDB,http://identifiers.org/tricdb/,canonical,bioregistry +merged,TRICDB,http://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias,bioregistry +merged,TRICDB,http://bioregistry.io/tricdb:,prefix_alias,bioregistry +merged,TRICDB,http://identifiers.org/tricdb:,prefix_alias,bioregistry +merged,TRICDB,https://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias,bioregistry +merged,TRICDB,https://bioregistry.io/tricdb:,prefix_alias,bioregistry +merged,TRICDB,https://identifiers.org/tricdb/,prefix_alias,bioregistry +merged,TRICDB,https://identifiers.org/tricdb:,prefix_alias,bioregistry merged,TRICHDB,http://identifiers.org/trichdb/,canonical,bioregistry merged,TRICHDB,http://bioregistry.io/trichdb:,prefix_alias,bioregistry merged,TRICHDB,http://identifiers.org/trichdb:,prefix_alias,bioregistry @@ -15090,6 +15128,7 @@ merged,Uber-anatomy ontology,http://purl.obolibrary.org/obo/UBERON_,namespace_al merged,UBERON,http://purl.obolibrary.org/obo/UBERON_,canonical,obo merged,UBERON,http://bioregistry.io/UBERON:,prefix_alias,bioregistry merged,UBERON,http://bioregistry.io/Uber-anatomy ontology:,prefix_alias,bioregistry +merged,UBERON,http://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias,bioregistry merged,UBERON,http://identifiers.org/UBERON/,prefix_alias,bioregistry merged,UBERON,http://identifiers.org/UBERON:,prefix_alias,bioregistry merged,UBERON,http://identifiers.org/uberon/UBERON:,prefix_alias,bioregistry @@ -15100,6 +15139,7 @@ merged,UBERON,http://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://purl.o merged,UBERON,http://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:,prefix_alias,bioregistry merged,UBERON,https://bioregistry.io/UBERON:,prefix_alias,bioregistry merged,UBERON,https://bioregistry.io/Uber-anatomy ontology:,prefix_alias,bioregistry +merged,UBERON,https://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias,bioregistry merged,UBERON,https://identifiers.org/UBERON/,prefix_alias,bioregistry merged,UBERON,https://identifiers.org/UBERON:,prefix_alias,bioregistry merged,UBERON,https://identifiers.org/uberon/UBERON:,prefix_alias,bioregistry diff --git a/src/prefixmaps/data/merged.oak.csv b/src/prefixmaps/data/merged.oak.csv index 3bde8b2..e4a1253 100644 --- a/src/prefixmaps/data/merged.oak.csv +++ b/src/prefixmaps/data/merged.oak.csv @@ -433,6 +433,7 @@ merged.oak,APOLLO_SV,https://bioregistry.io/apollosv:,prefix_alias,bioregistry merged.oak,APOLLO_SV,https://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias,bioregistry merged.oak,APOLLO_SV,https://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_,prefix_alias,bioregistry merged.oak,APOLLO_SV,https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_,prefix_alias,bioregistry +merged.oak,apollosv,http://purl.obolibrary.org/obo/APOLLO_SV_,namespace_alias,bioregistry merged.oak,app,http://jmvanel.free.fr/ontology/software_applications.n3#,canonical,prefixcc merged.oak,aprov,http://purl.org/a-proc#,canonical,prefixcc merged.oak,ARACHNOSERVER,http://identifiers.org/arachnoserver/,canonical,bioregistry @@ -1678,7 +1679,10 @@ merged.oak,CBIOPORTAL,https://www.cbioportal.org/study/summary?id=,prefix_alias, merged.oak,cbo,http://comicmeta.org/cbo/,canonical,prefixcc merged.oak,cbs,http://betalinkeddata.cbs.nl/def/cbs#,canonical,prefixcc merged.oak,cbv,https://ns.gs1.org/cbv/,canonical,prefixcc -merged.oak,cc,http://creativecommons.org/ns#,canonical,prefixcc +merged.oak,CC,https://creativecommons.org/ns#,canonical,bioregistry +merged.oak,CC,http://bioregistry.io/cc:,prefix_alias,bioregistry +merged.oak,CC,http://creativecommons.org/ns#,prefix_alias,bioregistry +merged.oak,CC,https://bioregistry.io/cc:,prefix_alias,bioregistry merged.oak,ccard,http://purl.org/commerce/creditcard#,canonical,prefixcc merged.oak,CCDC,http://identifiers.org/ccdc/,canonical,bioregistry merged.oak,CCDC,http://bioregistry.io/ccdc:,prefix_alias,bioregistry @@ -2159,6 +2163,7 @@ merged.oak,cjr,http://vocab.linkeddata.es/datosabiertos/def/urbanismo-infraestru merged.oak,CL,http://purl.obolibrary.org/obo/CL_,canonical,obo merged.oak,CL,http://bio2rdf.org/cl:,prefix_alias,bioregistry merged.oak,CL,http://bioregistry.io/CL:,prefix_alias,bioregistry +merged.oak,CL,http://cellxgene.cziscience.com/cellguide/CL_,prefix_alias,bioregistry merged.oak,CL,http://identifiers.org/CL/,prefix_alias,bioregistry merged.oak,CL,http://identifiers.org/CL:,prefix_alias,bioregistry merged.oak,CL,http://identifiers.org/cl/CL:,prefix_alias,bioregistry @@ -2168,6 +2173,7 @@ merged.oak,CL,http://purl.bioontology.org/ontology/CL/CL:,prefix_alias,bioregist merged.oak,CL,http://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/CL_,prefix_alias,bioregistry merged.oak,CL,https://bio2rdf.org/cl:,prefix_alias,bioregistry merged.oak,CL,https://bioregistry.io/CL:,prefix_alias,bioregistry +merged.oak,CL,https://cellxgene.cziscience.com/cellguide/CL_,prefix_alias,bioregistry merged.oak,CL,https://identifiers.org/CL/,prefix_alias,bioregistry merged.oak,CL,https://identifiers.org/CL:,prefix_alias,bioregistry merged.oak,CL,https://identifiers.org/cl/CL:,prefix_alias,bioregistry @@ -5489,7 +5495,7 @@ merged.oak,GIARDIADB,https://giardiadb.org/giardiadb/showRecord.do?name=GeneReco merged.oak,GIARDIADB,https://identifiers.org/giardiadb/,prefix_alias,bioregistry merged.oak,GIARDIADB,https://identifiers.org/giardiadb:,prefix_alias,bioregistry merged.oak,GIARDIADB,https://n2t.net/giardiadb:,prefix_alias,bioregistry -merged.oak,gist,http://ontologies.semanticarts.com/gist#,canonical,prefixcc +merged.oak,gist,https://ontologies.semanticarts.com/o/gistCore#,canonical,prefixcc merged.oak,GITHUB,http://identifiers.org/github/,canonical,bioregistry merged.oak,GITHUB,http://bioregistry.io/github:,prefix_alias,bioregistry merged.oak,GITHUB,http://github.com/,prefix_alias,bioregistry @@ -5904,6 +5910,7 @@ merged.oak,GRAMENE.GENE,https://identifiers.org/gramene.gene:,prefix_alias,biore merged.oak,GRAMENE.GENE,https://n2t.net/gramene.gene:,prefix_alias,bioregistry merged.oak,GRAMENE.GENE,https://www.gramene.org/db/genes/search_gene?acc=,prefix_alias,bioregistry merged.oak,GRAMENE.GENE,http://identifiers.org/gramene.gene/,namespace_alias,bioregistry +merged.oak,GRAMENE.GROWTHSTAGE,http://purl.obolibrary.org/obo/GRO_,namespace_alias,bioregistry merged.oak,GRAMENE.PROTEIN,http://bioregistry.io/GR_PROTEIN:,prefix_alias,bioregistry merged.oak,GRAMENE.PROTEIN,http://bioregistry.io/gramene.protein:,prefix_alias,bioregistry merged.oak,GRAMENE.PROTEIN,http://identifiers.org/gramene.protein:,prefix_alias,bioregistry @@ -7152,11 +7159,13 @@ merged.oak,INTERLEX,http://bioregistry.io/ILX:,prefix_alias,bioregistry merged.oak,INTERLEX,http://bioregistry.io/interlex:,prefix_alias,bioregistry merged.oak,INTERLEX,http://identifiers.org/ilx:,prefix_alias,bioregistry merged.oak,INTERLEX,http://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias,bioregistry +merged.oak,INTERLEX,http://uri.interlex.org/base/,prefix_alias,bioregistry merged.oak,INTERLEX,https://bioregistry.io/ILX:,prefix_alias,bioregistry merged.oak,INTERLEX,https://bioregistry.io/interlex:,prefix_alias,bioregistry merged.oak,INTERLEX,https://identifiers.org/ilx/,prefix_alias,bioregistry merged.oak,INTERLEX,https://identifiers.org/ilx:,prefix_alias,bioregistry merged.oak,INTERLEX,https://scicrunch.org/scicrunch/interlex/view/ilx_,prefix_alias,bioregistry +merged.oak,INTERLEX,https://uri.interlex.org/base/,prefix_alias,bioregistry merged.oak,interop,http://www.w3.org/ns/solid/interop#,canonical,prefixcc merged.oak,InterPro,https://registry.identifiers.org/registry/interpro/,canonical,go merged.oak,interpro,http://bio2rdf.org/interpro:,prefix_alias,bioregistry @@ -8190,6 +8199,14 @@ merged.oak,maeco,http://edg.topbraid.solutions/maeco/,canonical,prefixcc merged.oak,maeo,http://emmo.info/emmo/application/maeo/experts#,namespace_alias,prefixcc merged.oak,maet,http://edg.topbraid.solutions/taxonomy/macroeconomics/,canonical,prefixcc merged.oak,mag,https://makg.org/property/,canonical,prefixcc +merged.oak,MAGGOT,http://identifiers.org/maggot/,canonical,bioregistry +merged.oak,MAGGOT,http://bioregistry.io/maggot:,prefix_alias,bioregistry +merged.oak,MAGGOT,http://identifiers.org/maggot:,prefix_alias,bioregistry +merged.oak,MAGGOT,http://pmb-bordeaux.fr/maggot/metadata/,prefix_alias,bioregistry +merged.oak,MAGGOT,https://bioregistry.io/maggot:,prefix_alias,bioregistry +merged.oak,MAGGOT,https://identifiers.org/maggot/,prefix_alias,bioregistry +merged.oak,MAGGOT,https://identifiers.org/maggot:,prefix_alias,bioregistry +merged.oak,MAGGOT,https://pmb-bordeaux.fr/maggot/metadata/,prefix_alias,bioregistry merged.oak,magmardl,http://www.semanticweb.org/magma-core/rdl#,canonical,prefixcc merged.oak,magmauser,http://www.semanticweb.org/magma-core/user#,canonical,prefixcc merged.oak,MAIZEGDB,http://identifiers.org/maizegdb.locus/,namespace_alias,bioregistry @@ -9642,6 +9659,7 @@ merged.oak,NCBIGene,http://bioregistry.io/ctd.gene:,prefix_alias,bioregistry merged.oak,NCBIGene,http://bioregistry.io/entrez gene/locuslink:,prefix_alias,bioregistry merged.oak,NCBIGene,http://bioregistry.io/entrez:,prefix_alias,bioregistry merged.oak,NCBIGene,http://bioregistry.io/genewiki:,prefix_alias,bioregistry +merged.oak,NCBIGene,http://bioregistry.io/nihgeneid:,prefix_alias,bioregistry merged.oak,NCBIGene,http://bioregistry.io/wikigenes:,prefix_alias,bioregistry merged.oak,NCBIGene,http://ctdbase.org/detail.go?type=gene&acc=,prefix_alias,bioregistry merged.oak,NCBIGene,http://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias,bioregistry @@ -9671,6 +9689,7 @@ merged.oak,NCBIGene,https://bioregistry.io/ctd.gene:,prefix_alias,bioregistry merged.oak,NCBIGene,https://bioregistry.io/entrez gene/locuslink:,prefix_alias,bioregistry merged.oak,NCBIGene,https://bioregistry.io/entrez:,prefix_alias,bioregistry merged.oak,NCBIGene,https://bioregistry.io/genewiki:,prefix_alias,bioregistry +merged.oak,NCBIGene,https://bioregistry.io/nihgeneid:,prefix_alias,bioregistry merged.oak,NCBIGene,https://bioregistry.io/wikigenes:,prefix_alias,bioregistry merged.oak,NCBIGene,https://ctdbase.org/detail.go?type=gene&acc=,prefix_alias,bioregistry merged.oak,NCBIGene,https://ctdbase.org/detail.go?type=gene&db=GENE&acc=,prefix_alias,bioregistry @@ -10037,12 +10056,15 @@ merged.oak,nid3,http://www.semanticdesktop.org/ontologies/2007/05/10/nid3#,canon merged.oak,nidm,http://nidm.nidash.org/,canonical,prefixcc merged.oak,nie,http://www.semanticdesktop.org/ontologies/2007/01/19/nie#,canonical,prefixcc merged.oak,nif,http://persistence.uni-leipzig.org/nlp2rdf/ontologies/nif-core#,canonical,prefixcc +merged.oak,nif.cell,http://purl.obolibrary.org/obo/NIF_CELL_,namespace_alias,bioregistry +merged.oak,nif.dysfunction,http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_,namespace_alias,bioregistry merged.oak,NIF.EXT,http://uri.neuinfo.org/nif/nifstd/nifext_,canonical,bioregistry merged.oak,NIF.EXT,http://bioregistry.io/NIFEXT:,prefix_alias,bioregistry merged.oak,NIF.EXT,http://bioregistry.io/nif.ext:,prefix_alias,bioregistry merged.oak,NIF.EXT,https://bioregistry.io/NIFEXT:,prefix_alias,bioregistry merged.oak,NIF.EXT,https://bioregistry.io/nif.ext:,prefix_alias,bioregistry merged.oak,NIF.EXT,https://uri.neuinfo.org/nif/nifstd/nifext_,prefix_alias,bioregistry +merged.oak,nif.grossanatomy,http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_,namespace_alias,bioregistry merged.oak,NIF.STD,http://uri.neuinfo.org/nif/nifstd/,canonical,bioregistry merged.oak,NIF.STD,http://bioregistry.io/NIFSTD:,prefix_alias,bioregistry merged.oak,NIF.STD,http://bioregistry.io/nif.std:,prefix_alias,bioregistry @@ -10071,6 +10093,7 @@ merged.oak,NIF_SUBCELLULAR,http://uri.neuinfo.org/nif/nifstd/nlx_subcell_,namesp merged.oak,NIFEXT,http://uri.neuinfo.org/nif/nifstd/nifext_,namespace_alias,bioregistry merged.oak,NIFSTD,http://uri.neuinfo.org/nif/nifstd/,namespace_alias,bioregistry merged.oak,nih,http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#,namespace_alias,prefixcc +merged.oak,nihgeneid,http://identifiers.org/ncbigene/,namespace_alias,bioregistry merged.oak,NIHREPORTER.PROJECT,https://reporter.nih.gov/project-details/,canonical,bioregistry merged.oak,NIHREPORTER.PROJECT,http://bioregistry.io/nihreporter.project:,prefix_alias,bioregistry merged.oak,NIHREPORTER.PROJECT,http://reporter.nih.gov/project-details/,prefix_alias,bioregistry @@ -10861,6 +10884,10 @@ merged.oak,opengov,http://www.w3.org/opengov#,canonical,prefixcc merged.oak,openlinks,http://www.openlinksw.com/schemas/virtrdf#,canonical,prefixcc merged.oak,opensearch,http://a9.com/-/spec/opensearch/1.1/,canonical,prefixcc merged.oak,openskos,http://openskos.org/xmlns#,canonical,prefixcc +merged.oak,OPENWEMI,https://dcmi.github.io/openwemi/ns#,canonical,bioregistry +merged.oak,OPENWEMI,http://bioregistry.io/openwemi:,prefix_alias,bioregistry +merged.oak,OPENWEMI,http://dcmi.github.io/openwemi/ns#,prefix_alias,bioregistry +merged.oak,OPENWEMI,https://bioregistry.io/openwemi:,prefix_alias,bioregistry merged.oak,oper,http://sweet.jpl.nasa.gov/2.0/mathOperation.owl#,canonical,prefixcc merged.oak,OPL,http://purl.obolibrary.org/obo/OPL_,canonical,obo merged.oak,OPL,http://bioregistry.io/OPL:,prefix_alias,bioregistry @@ -12851,7 +12878,10 @@ merged.oak,RDF,http://bioregistry.io/rdf:,prefix_alias,bioregistry merged.oak,RDF,https://bioregistry.io/rdf:,prefix_alias,bioregistry merged.oak,RDF,https://www.w3.org/1999/02/22-rdf-syntax-ns#,prefix_alias,bioregistry merged.oak,rdf123,http://rdf123.umbc.edu/ns/,canonical,prefixcc -merged.oak,rdfa,http://www.w3.org/ns/rdfa#,canonical,prefixcc +merged.oak,RDFA,http://www.w3.org/ns/rdfa#,canonical,bioregistry +merged.oak,RDFA,http://bioregistry.io/rdfa:,prefix_alias,bioregistry +merged.oak,RDFA,https://bioregistry.io/rdfa:,prefix_alias,bioregistry +merged.oak,RDFA,https://www.w3.org/ns/rdfa#,prefix_alias,bioregistry merged.oak,rdfdata,http://rdf.data-vocabulary.org/rdf.xml#,canonical,prefixcc merged.oak,rdfdf,http://www.openlinksw.com/virtrdf-data-formats#,canonical,prefixcc merged.oak,rdfg,http://www.w3.org/2004/03/trix/rdfg-1/,canonical,prefixcc @@ -15005,6 +15035,14 @@ merged.oak,TREEFAM,https://n2t.net/treefam:,prefix_alias,bioregistry merged.oak,TREEFAM,https://www.treefam.org/cgi-bin/TFinfo.pl?ac=,prefix_alias,bioregistry merged.oak,TREEFAM,https://www.treefam.org/family/,prefix_alias,bioregistry merged.oak,trek,https://w3id.org/trek/,canonical,prefixcc +merged.oak,TRICDB,http://identifiers.org/tricdb/,canonical,bioregistry +merged.oak,TRICDB,http://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias,bioregistry +merged.oak,TRICDB,http://bioregistry.io/tricdb:,prefix_alias,bioregistry +merged.oak,TRICDB,http://identifiers.org/tricdb:,prefix_alias,bioregistry +merged.oak,TRICDB,https://biomeddb.org/Disease/Details?DISEASEID=,prefix_alias,bioregistry +merged.oak,TRICDB,https://bioregistry.io/tricdb:,prefix_alias,bioregistry +merged.oak,TRICDB,https://identifiers.org/tricdb/,prefix_alias,bioregistry +merged.oak,TRICDB,https://identifiers.org/tricdb:,prefix_alias,bioregistry merged.oak,TRICHDB,http://identifiers.org/trichdb/,canonical,bioregistry merged.oak,TRICHDB,http://bioregistry.io/trichdb:,prefix_alias,bioregistry merged.oak,TRICHDB,http://identifiers.org/trichdb:,prefix_alias,bioregistry @@ -15090,6 +15128,7 @@ merged.oak,Uber-anatomy ontology,http://purl.obolibrary.org/obo/UBERON_,namespac merged.oak,UBERON,http://purl.obolibrary.org/obo/UBERON_,canonical,obo merged.oak,UBERON,http://bioregistry.io/UBERON:,prefix_alias,bioregistry merged.oak,UBERON,http://bioregistry.io/Uber-anatomy ontology:,prefix_alias,bioregistry +merged.oak,UBERON,http://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias,bioregistry merged.oak,UBERON,http://identifiers.org/UBERON/,prefix_alias,bioregistry merged.oak,UBERON,http://identifiers.org/UBERON:,prefix_alias,bioregistry merged.oak,UBERON,http://identifiers.org/uberon/UBERON:,prefix_alias,bioregistry @@ -15100,6 +15139,7 @@ merged.oak,UBERON,http://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://pu merged.oak,UBERON,http://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:,prefix_alias,bioregistry merged.oak,UBERON,https://bioregistry.io/UBERON:,prefix_alias,bioregistry merged.oak,UBERON,https://bioregistry.io/Uber-anatomy ontology:,prefix_alias,bioregistry +merged.oak,UBERON,https://cellxgene.cziscience.com/cellguide/tissues/UBERON_,prefix_alias,bioregistry merged.oak,UBERON,https://identifiers.org/UBERON/,prefix_alias,bioregistry merged.oak,UBERON,https://identifiers.org/UBERON:,prefix_alias,bioregistry merged.oak,UBERON,https://identifiers.org/uberon/UBERON:,prefix_alias,bioregistry diff --git a/src/prefixmaps/data/prefixcc.csv b/src/prefixmaps/data/prefixcc.csv index e32a7c9..2972418 100644 --- a/src/prefixmaps/data/prefixcc.csv +++ b/src/prefixmaps/data/prefixcc.csv @@ -936,7 +936,7 @@ prefixcc,gfo,http://www.onto-med.de/ontologies/gfo.owl#,canonical prefixcc,gg,http://www.gemeentegeschiedenis.nl/gg-schema#,canonical prefixcc,ggbn,http://data.ggbn.org/schemas/ggbn/terms/,canonical prefixcc,ghga,http://w3id.org/ghga/,canonical -prefixcc,gist,http://ontologies.semanticarts.com/gist#,canonical +prefixcc,gist,https://ontologies.semanticarts.com/o/gistCore#,canonical prefixcc,giving,http://ontologi.es/giving#,canonical prefixcc,gl,http://schema.geolink.org/,canonical prefixcc,gldp,http://www.w3.org/ns/people#,canonical diff --git a/src/prefixmaps/ingest/etl_runner.py b/src/prefixmaps/ingest/etl_runner.py index 686c315..9ef91d7 100644 --- a/src/prefixmaps/ingest/etl_runner.py +++ b/src/prefixmaps/ingest/etl_runner.py @@ -7,6 +7,7 @@ from prefixmaps.data import data_path from prefixmaps.datamodel.context import CONTEXT, Context from prefixmaps.ingest.ingest_bioportal import from_bioportal_file +from prefixmaps.ingest.ingest_jsonld import from_prefixcc from prefixmaps.ingest.ingest_bioregistry import ( from_bioregistry, from_bioregistry_upper, @@ -25,14 +26,14 @@ "bioportal": from_bioportal_file, "bioregistry.upper": from_bioregistry_upper, "bioregistry": from_bioregistry, - # "prefixcc": from_prefixcc, + "prefixcc": from_prefixcc, "w3id": from_w3id, } """Maps the name of a context to the python function that can generate it""" COMBINED = { "merged": ["obo", "go", "linked_data", "bioregistry.upper", "prefixcc"], - "merged.oak": ["obo", "go", "linked_data", "bioregistry.upper", "prefixcc"], + "merged.oak": ["obo", "go", "linked_data", "bioregistry.upper","prefixcc"], } """Contexts that remix other contexts. Order is significant, with the first listed having highest precedence."""