From 80d7305a858f87bcfebeb179dc09bbc0aea25fc8 Mon Sep 17 00:00:00 2001 From: Kevin Schaper Date: Fri, 11 Mar 2022 13:13:51 -0800 Subject: [PATCH] Convert from Pipenv to Poetry & update linkml_model import location --- Pipfile | 21 - linkml_solr/cli.py | 4 +- linkml_solr/query.py | 2 +- linkml_solr/utils/solr_bulkload.py | 2 +- poetry.lock | 1927 ++++++++++++++++++++++++++++ pyproject.toml | 26 +- requirements-dev.txt | 14 - requirements.txt | 20 - setup.py | 12 - 9 files changed, 1955 insertions(+), 73 deletions(-) delete mode 100644 Pipfile create mode 100644 poetry.lock delete mode 100644 requirements-dev.txt delete mode 100644 requirements.txt delete mode 100644 setup.py diff --git a/Pipfile b/Pipfile deleted file mode 100644 index 164aa43..0000000 --- a/Pipfile +++ /dev/null @@ -1,21 +0,0 @@ -[[source]] -url = "https://pypi.org/simple" -verify_ssl = true -name = "pypi" - -[packages] -linkml = ">=1.1.15" -linkml-runtime = ">=1.1.12" -pyparsing = "~=2.4" -sparqlwrapper = "*" -pysolr = "*" -flatten-dict = "*" -linkml-solr = {editable = true, path = "."} -json-flattener = ">= 0.1.7" - -[dev-packages] -tox = "*" -linkml-solr = {editable = true, path = "."} - -[pipenv] -allow_prereleases = true diff --git a/linkml_solr/cli.py b/linkml_solr/cli.py index dfb68c4..0c234d4 100644 --- a/linkml_solr/cli.py +++ b/linkml_solr/cli.py @@ -3,7 +3,7 @@ import logging import subprocess from linkml.generators.yamlgen import YAMLGenerator -from linkml_model.meta import SchemaDefinition, SlotDefinitionName +from linkml_runtime.linkml_model.meta import SchemaDefinition, SlotDefinitionName from linkml_runtime.loaders import yaml_loader from linkml_solr import SolrQueryEngine, SolrEndpoint, DEFAULT_CORE, DEFAULT_SOLR_URL from linkml_solr.utils.solr_bulkload import bulkload_file @@ -164,4 +164,4 @@ def create_schema(schema, url, core): if __name__ == '__main__': - main() \ No newline at end of file + main() diff --git a/linkml_solr/query.py b/linkml_solr/query.py index 9caecb2..5b7a813 100644 --- a/linkml_solr/query.py +++ b/linkml_solr/query.py @@ -8,7 +8,7 @@ from linkml_runtime.dumpers import json_dumper from linkml_runtime.utils.formatutils import underscore -from linkml_model.meta import SchemaDefinition, ClassDefinition, YAMLRoot, ElementName, SlotDefinition, SlotDefinitionName +from linkml_runtime.linkml_model.meta import SchemaDefinition, ClassDefinition, YAMLRoot, ElementName, SlotDefinition, SlotDefinitionName from linkml_solr.solrmodel import SolrEndpoint, SolrQuery, SolrQueryResult, RawSolrResult, FIELD from linkml_solr.solrschema import Transaction diff --git a/linkml_solr/utils/solr_bulkload.py b/linkml_solr/utils/solr_bulkload.py index 2a27b6e..884431e 100644 --- a/linkml_solr/utils/solr_bulkload.py +++ b/linkml_solr/utils/solr_bulkload.py @@ -2,7 +2,7 @@ import logging import subprocess from linkml.generators.yamlgen import YAMLGenerator -from linkml_model.meta import SchemaDefinition, SlotDefinitionName +from linkml_runtime.linkml_model.meta import SchemaDefinition, SlotDefinitionName from linkml_runtime.loaders import yaml_loader from linkml_solr import SolrQueryEngine, SolrEndpoint diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..1acd548 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1927 @@ +[[package]] +name = "alabaster" +version = "0.7.12" +description = "A configurable sidebar-enabled Sphinx theme" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "antlr4-python3-runtime" +version = "4.9.3" +description = "ANTLR 4.9.3 runtime for Python 3.7" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "argparse" +version = "1.4.0" +description = "Python command-line parsing library" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "attrs" +version = "21.4.0" +description = "Classes Without Boilerplate" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] + +[[package]] +name = "babel" +version = "2.9.1" +description = "Internationalization utilities" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.dependencies] +pytz = ">=2015.7" + +[[package]] +name = "certifi" +version = "2021.10.8" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "cfgraph" +version = "0.2.1" +description = "rdflib collections flattening graph" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +rdflib = ">=0.4.2" + +[[package]] +name = "chardet" +version = "4.0.0" +description = "Universal encoding detector for Python 2 and 3" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[[package]] +name = "charset-normalizer" +version = "2.0.12" +description = "The Real First Universal Charset Detector. 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+linkml-runtime = "^1.1.12" +pyparsing = "2.4" +SPARQLWrapper = "^1.8.5" +pysolr = "^3.9.0" +flatten-dict = "^0.4.2" +json-flattener = "^0.1.9" + +[tool.poetry.dev-dependencies] +tox = "^3.24.5" + [build-system] -requires = ["setuptools", "wheel"] -build-backend = "setuptools.build_meta:__legacy__" \ No newline at end of file +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/requirements-dev.txt b/requirements-dev.txt deleted file mode 100644 index ac13a0f..0000000 --- a/requirements-dev.txt +++ /dev/null @@ -1,14 +0,0 @@ -################################################################################ -# This requirements file has been automatically generated from `Pipfile` with -# `pipenv-to-requirements` -# -# -# This has been done to maintain backward compatibility with tools and services -# that do not support `Pipfile` yet. -# -# Do NOT edit it directly, use `pipenv install [-d]` to modify `Pipfile` and -# `Pipfile.lock` and then regenerate `requirements*.txt`. -################################################################################ - --e . -tox diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 98e7da1..0000000 --- a/requirements.txt +++ /dev/null @@ -1,20 +0,0 @@ -################################################################################ -# This requirements file has been automatically generated from `Pipfile` with -# `pipenv-to-requirements` -# -# -# This has been done to maintain backward compatibility with tools and services -# that do not support `Pipfile` yet. -# -# Do NOT edit it directly, use `pipenv install [-d]` to modify `Pipfile` and -# `Pipfile.lock` and then regenerate `requirements*.txt`. -################################################################################ - --e . -flatten-dict -json-flattener>= 0.1.7 -linkml-runtime>=1.1.12 -linkml>=1.1.15 -pyparsing~=2.4 -pysolr -sparqlwrapper diff --git a/setup.py b/setup.py deleted file mode 100644 index 5b1c55b..0000000 --- a/setup.py +++ /dev/null @@ -1,12 +0,0 @@ -#!/usr/bin/env python -import sys -from setuptools import setup -from warnings import warn - -if sys.version_info < (3, 7, 6): - warn(f"Some URL processing will fail with python 3.7.5 or earlier. Current version: {sys.version_info}") - -setup( - setup_requires=['pbr'], - pbr=True, -) \ No newline at end of file