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amigo.py
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# Auto generated from amigo.yaml by pythongen.py version: 0.9.0
# Generation date: 2021-07-23 17:49
# Schema: None
#
# id: https://w3id.org//None
# description: TODO
# license: https://creativecommons.org/publicdomain/zero/1.0/
import dataclasses
import sys
import re
from jsonasobj2 import JsonObj, as_dict
from typing import Optional, List, Union, Dict, ClassVar, Any
from dataclasses import dataclass
from linkml_runtime.linkml_model.meta import EnumDefinition, PermissibleValue, PvFormulaOptions
from linkml_runtime.utils.slot import Slot
from linkml_runtime.utils.metamodelcore import empty_list, empty_dict, bnode
from linkml_runtime.utils.yamlutils import YAMLRoot, extended_str, extended_float, extended_int
from linkml_runtime.utils.dataclass_extensions_376 import dataclasses_init_fn_with_kwargs
from linkml_runtime.utils.formatutils import camelcase, underscore, sfx
from linkml_runtime.utils.enumerations import EnumDefinitionImpl
from rdflib import Namespace, URIRef
from linkml_runtime.utils.curienamespace import CurieNamespace
from linkml_runtime.linkml_model.types import Boolean, Integer, String
from linkml_runtime.utils.metamodelcore import Bool
metamodel_version = "1.7.0"
# Overwrite dataclasses _init_fn to add **kwargs in __init__
dataclasses._init_fn = dataclasses_init_fn_with_kwargs
# Namespaces
NONE = CurieNamespace('None', 'http://kbase.us/')
LINKML = CurieNamespace('linkml', 'https://w3id.org/linkml/')
XSD = CurieNamespace('xsd', 'http://www.w3.org/2001/XMLSchema#')
DEFAULT_ = CurieNamespace('', 'https://w3id.org//None/')
# Types
class SearchableString(String):
type_class_uri = XSD.string
type_class_curie = "xsd:string"
type_name = "SearchableString"
type_model_uri = URIRef("https://w3id.org//None/SearchableString")
# Class references
@dataclass
class Annotation(YAMLRoot):
"""
Associations between GO terms and genes or gene products.
"""
_inherited_slots: ClassVar[List[str]] = []
class_class_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/Annotation")
class_class_curie: ClassVar[str] = None
class_name: ClassVar[str] = "annotation"
class_model_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/Annotation")
document_category: Optional[str] = None
id: Optional[str] = None
source: Optional[str] = None
type: Optional[str] = None
date: Optional[str] = None
assigned_by: Optional[str] = None
is_redundant_for: Optional[str] = None
taxon: Optional[str] = None
taxon_label: Optional[Union[str, SearchableString]] = None
taxon_label_searchable: Optional[Union[str, SearchableString]] = None
taxon_closure: Optional[Union[str, List[str]]] = empty_list()
taxon_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_subset_closure: Optional[Union[str, List[str]]] = empty_list()
taxon_subset_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_subset_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
secondary_taxon: Optional[str] = None
secondary_taxon_label: Optional[Union[str, SearchableString]] = None
secondary_taxon_label_searchable: Optional[Union[str, SearchableString]] = None
secondary_taxon_closure: Optional[Union[str, List[str]]] = empty_list()
secondary_taxon_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
secondary_taxon_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
isa_partof_closure: Optional[Union[str, List[str]]] = empty_list()
isa_partof_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
isa_partof_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
regulates_closure: Optional[Union[str, List[str]]] = empty_list()
regulates_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
regulates_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
has_participant_closure: Optional[Union[str, List[str]]] = empty_list()
has_participant_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
has_participant_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
synonym: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
synonym_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
bioentity: Optional[str] = None
bioentity_label: Optional[Union[str, SearchableString]] = None
bioentity_label_searchable: Optional[Union[str, SearchableString]] = None
bioentity_name: Optional[Union[str, SearchableString]] = None
bioentity_name_searchable: Optional[Union[str, SearchableString]] = None
bioentity_internal_id: Optional[str] = None
qualifier: Optional[Union[str, List[str]]] = empty_list()
annotation_class: Optional[str] = None
annotation_class_label: Optional[Union[str, SearchableString]] = None
annotation_class_label_searchable: Optional[Union[str, SearchableString]] = None
aspect: Optional[str] = None
bioentity_isoform: Optional[str] = None
evidence_type: Optional[str] = None
evidence_type_closure: Optional[Union[str, List[str]]] = empty_list()
evidence_with: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
evidence_with_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
evidence: Optional[str] = None
evidence_label: Optional[Union[str, SearchableString]] = None
evidence_label_searchable: Optional[Union[str, SearchableString]] = None
evidence_closure: Optional[Union[str, List[str]]] = empty_list()
evidence_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
evidence_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
evidence_subset_closure: Optional[Union[str, List[str]]] = empty_list()
evidence_subset_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
evidence_subset_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
reference: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
reference_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
annotation_extension_class: Optional[Union[str, List[str]]] = empty_list()
annotation_extension_class_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
annotation_extension_class_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
annotation_extension_class_closure: Optional[Union[str, List[str]]] = empty_list()
annotation_extension_class_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
annotation_extension_class_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
annotation_extension_json: Optional[Union[str, List[str]]] = empty_list()
panther_family: Optional[Union[str, SearchableString]] = None
panther_family_searchable: Optional[Union[str, SearchableString]] = None
panther_family_label: Optional[Union[str, SearchableString]] = None
panther_family_label_searchable: Optional[Union[str, SearchableString]] = None
geospatial_x: Optional[Union[int, List[int]]] = empty_list()
geospatial_y: Optional[Union[int, List[int]]] = empty_list()
geospatial_z: Optional[Union[int, List[int]]] = empty_list()
def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
if self.document_category is not None and not isinstance(self.document_category, str):
self.document_category = str(self.document_category)
if self.id is not None and not isinstance(self.id, str):
self.id = str(self.id)
if self.source is not None and not isinstance(self.source, str):
self.source = str(self.source)
if self.type is not None and not isinstance(self.type, str):
self.type = str(self.type)
if self.date is not None and not isinstance(self.date, str):
self.date = str(self.date)
if self.assigned_by is not None and not isinstance(self.assigned_by, str):
self.assigned_by = str(self.assigned_by)
if self.is_redundant_for is not None and not isinstance(self.is_redundant_for, str):
self.is_redundant_for = str(self.is_redundant_for)
if self.taxon is not None and not isinstance(self.taxon, str):
self.taxon = str(self.taxon)
if self.taxon_label is not None and not isinstance(self.taxon_label, SearchableString):
self.taxon_label = SearchableString(self.taxon_label)
if self.taxon_label_searchable is not None and not isinstance(self.taxon_label_searchable, SearchableString):
self.taxon_label_searchable = SearchableString(self.taxon_label_searchable)
if not isinstance(self.taxon_closure, list):
self.taxon_closure = [self.taxon_closure] if self.taxon_closure is not None else []
self.taxon_closure = [v if isinstance(v, str) else str(v) for v in self.taxon_closure]
if not isinstance(self.taxon_closure_label, list):
self.taxon_closure_label = [self.taxon_closure_label] if self.taxon_closure_label is not None else []
self.taxon_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label]
if not isinstance(self.taxon_closure_label_searchable, list):
self.taxon_closure_label_searchable = [self.taxon_closure_label_searchable] if self.taxon_closure_label_searchable is not None else []
self.taxon_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label_searchable]
if not isinstance(self.taxon_subset_closure, list):
self.taxon_subset_closure = [self.taxon_subset_closure] if self.taxon_subset_closure is not None else []
self.taxon_subset_closure = [v if isinstance(v, str) else str(v) for v in self.taxon_subset_closure]
if not isinstance(self.taxon_subset_closure_label, list):
self.taxon_subset_closure_label = [self.taxon_subset_closure_label] if self.taxon_subset_closure_label is not None else []
self.taxon_subset_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_subset_closure_label]
if not isinstance(self.taxon_subset_closure_label_searchable, list):
self.taxon_subset_closure_label_searchable = [self.taxon_subset_closure_label_searchable] if self.taxon_subset_closure_label_searchable is not None else []
self.taxon_subset_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_subset_closure_label_searchable]
if self.secondary_taxon is not None and not isinstance(self.secondary_taxon, str):
self.secondary_taxon = str(self.secondary_taxon)
if self.secondary_taxon_label is not None and not isinstance(self.secondary_taxon_label, SearchableString):
self.secondary_taxon_label = SearchableString(self.secondary_taxon_label)
if self.secondary_taxon_label_searchable is not None and not isinstance(self.secondary_taxon_label_searchable, SearchableString):
self.secondary_taxon_label_searchable = SearchableString(self.secondary_taxon_label_searchable)
if not isinstance(self.secondary_taxon_closure, list):
self.secondary_taxon_closure = [self.secondary_taxon_closure] if self.secondary_taxon_closure is not None else []
self.secondary_taxon_closure = [v if isinstance(v, str) else str(v) for v in self.secondary_taxon_closure]
if not isinstance(self.secondary_taxon_closure_label, list):
self.secondary_taxon_closure_label = [self.secondary_taxon_closure_label] if self.secondary_taxon_closure_label is not None else []
self.secondary_taxon_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.secondary_taxon_closure_label]
if not isinstance(self.secondary_taxon_closure_label_searchable, list):
self.secondary_taxon_closure_label_searchable = [self.secondary_taxon_closure_label_searchable] if self.secondary_taxon_closure_label_searchable is not None else []
self.secondary_taxon_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.secondary_taxon_closure_label_searchable]
if not isinstance(self.isa_partof_closure, list):
self.isa_partof_closure = [self.isa_partof_closure] if self.isa_partof_closure is not None else []
self.isa_partof_closure = [v if isinstance(v, str) else str(v) for v in self.isa_partof_closure]
if not isinstance(self.isa_partof_closure_label, list):
self.isa_partof_closure_label = [self.isa_partof_closure_label] if self.isa_partof_closure_label is not None else []
self.isa_partof_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.isa_partof_closure_label]
if not isinstance(self.isa_partof_closure_label_searchable, list):
self.isa_partof_closure_label_searchable = [self.isa_partof_closure_label_searchable] if self.isa_partof_closure_label_searchable is not None else []
self.isa_partof_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.isa_partof_closure_label_searchable]
if not isinstance(self.regulates_closure, list):
self.regulates_closure = [self.regulates_closure] if self.regulates_closure is not None else []
self.regulates_closure = [v if isinstance(v, str) else str(v) for v in self.regulates_closure]
if not isinstance(self.regulates_closure_label, list):
self.regulates_closure_label = [self.regulates_closure_label] if self.regulates_closure_label is not None else []
self.regulates_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.regulates_closure_label]
if not isinstance(self.regulates_closure_label_searchable, list):
self.regulates_closure_label_searchable = [self.regulates_closure_label_searchable] if self.regulates_closure_label_searchable is not None else []
self.regulates_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.regulates_closure_label_searchable]
if not isinstance(self.has_participant_closure, list):
self.has_participant_closure = [self.has_participant_closure] if self.has_participant_closure is not None else []
self.has_participant_closure = [v if isinstance(v, str) else str(v) for v in self.has_participant_closure]
if not isinstance(self.has_participant_closure_label, list):
self.has_participant_closure_label = [self.has_participant_closure_label] if self.has_participant_closure_label is not None else []
self.has_participant_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.has_participant_closure_label]
if not isinstance(self.has_participant_closure_label_searchable, list):
self.has_participant_closure_label_searchable = [self.has_participant_closure_label_searchable] if self.has_participant_closure_label_searchable is not None else []
self.has_participant_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.has_participant_closure_label_searchable]
if not isinstance(self.synonym, list):
self.synonym = [self.synonym] if self.synonym is not None else []
self.synonym = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.synonym]
if not isinstance(self.synonym_searchable, list):
self.synonym_searchable = [self.synonym_searchable] if self.synonym_searchable is not None else []
self.synonym_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.synonym_searchable]
if self.bioentity is not None and not isinstance(self.bioentity, str):
self.bioentity = str(self.bioentity)
if self.bioentity_label is not None and not isinstance(self.bioentity_label, SearchableString):
self.bioentity_label = SearchableString(self.bioentity_label)
if self.bioentity_label_searchable is not None and not isinstance(self.bioentity_label_searchable, SearchableString):
self.bioentity_label_searchable = SearchableString(self.bioentity_label_searchable)
if self.bioentity_name is not None and not isinstance(self.bioentity_name, SearchableString):
self.bioentity_name = SearchableString(self.bioentity_name)
if self.bioentity_name_searchable is not None and not isinstance(self.bioentity_name_searchable, SearchableString):
self.bioentity_name_searchable = SearchableString(self.bioentity_name_searchable)
if self.bioentity_internal_id is not None and not isinstance(self.bioentity_internal_id, str):
self.bioentity_internal_id = str(self.bioentity_internal_id)
if not isinstance(self.qualifier, list):
self.qualifier = [self.qualifier] if self.qualifier is not None else []
self.qualifier = [v if isinstance(v, str) else str(v) for v in self.qualifier]
if self.annotation_class is not None and not isinstance(self.annotation_class, str):
self.annotation_class = str(self.annotation_class)
if self.annotation_class_label is not None and not isinstance(self.annotation_class_label, SearchableString):
self.annotation_class_label = SearchableString(self.annotation_class_label)
if self.annotation_class_label_searchable is not None and not isinstance(self.annotation_class_label_searchable, SearchableString):
self.annotation_class_label_searchable = SearchableString(self.annotation_class_label_searchable)
if self.aspect is not None and not isinstance(self.aspect, str):
self.aspect = str(self.aspect)
if self.bioentity_isoform is not None and not isinstance(self.bioentity_isoform, str):
self.bioentity_isoform = str(self.bioentity_isoform)
if self.evidence_type is not None and not isinstance(self.evidence_type, str):
self.evidence_type = str(self.evidence_type)
if not isinstance(self.evidence_type_closure, list):
self.evidence_type_closure = [self.evidence_type_closure] if self.evidence_type_closure is not None else []
self.evidence_type_closure = [v if isinstance(v, str) else str(v) for v in self.evidence_type_closure]
if not isinstance(self.evidence_with, list):
self.evidence_with = [self.evidence_with] if self.evidence_with is not None else []
self.evidence_with = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.evidence_with]
if not isinstance(self.evidence_with_searchable, list):
self.evidence_with_searchable = [self.evidence_with_searchable] if self.evidence_with_searchable is not None else []
self.evidence_with_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.evidence_with_searchable]
if self.evidence is not None and not isinstance(self.evidence, str):
self.evidence = str(self.evidence)
if self.evidence_label is not None and not isinstance(self.evidence_label, SearchableString):
self.evidence_label = SearchableString(self.evidence_label)
if self.evidence_label_searchable is not None and not isinstance(self.evidence_label_searchable, SearchableString):
self.evidence_label_searchable = SearchableString(self.evidence_label_searchable)
if not isinstance(self.evidence_closure, list):
self.evidence_closure = [self.evidence_closure] if self.evidence_closure is not None else []
self.evidence_closure = [v if isinstance(v, str) else str(v) for v in self.evidence_closure]
if not isinstance(self.evidence_closure_label, list):
self.evidence_closure_label = [self.evidence_closure_label] if self.evidence_closure_label is not None else []
self.evidence_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.evidence_closure_label]
if not isinstance(self.evidence_closure_label_searchable, list):
self.evidence_closure_label_searchable = [self.evidence_closure_label_searchable] if self.evidence_closure_label_searchable is not None else []
self.evidence_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.evidence_closure_label_searchable]
if not isinstance(self.evidence_subset_closure, list):
self.evidence_subset_closure = [self.evidence_subset_closure] if self.evidence_subset_closure is not None else []
self.evidence_subset_closure = [v if isinstance(v, str) else str(v) for v in self.evidence_subset_closure]
if not isinstance(self.evidence_subset_closure_label, list):
self.evidence_subset_closure_label = [self.evidence_subset_closure_label] if self.evidence_subset_closure_label is not None else []
self.evidence_subset_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.evidence_subset_closure_label]
if not isinstance(self.evidence_subset_closure_label_searchable, list):
self.evidence_subset_closure_label_searchable = [self.evidence_subset_closure_label_searchable] if self.evidence_subset_closure_label_searchable is not None else []
self.evidence_subset_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.evidence_subset_closure_label_searchable]
if not isinstance(self.reference, list):
self.reference = [self.reference] if self.reference is not None else []
self.reference = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.reference]
if not isinstance(self.reference_searchable, list):
self.reference_searchable = [self.reference_searchable] if self.reference_searchable is not None else []
self.reference_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.reference_searchable]
if not isinstance(self.annotation_extension_class, list):
self.annotation_extension_class = [self.annotation_extension_class] if self.annotation_extension_class is not None else []
self.annotation_extension_class = [v if isinstance(v, str) else str(v) for v in self.annotation_extension_class]
if not isinstance(self.annotation_extension_class_label, list):
self.annotation_extension_class_label = [self.annotation_extension_class_label] if self.annotation_extension_class_label is not None else []
self.annotation_extension_class_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.annotation_extension_class_label]
if not isinstance(self.annotation_extension_class_label_searchable, list):
self.annotation_extension_class_label_searchable = [self.annotation_extension_class_label_searchable] if self.annotation_extension_class_label_searchable is not None else []
self.annotation_extension_class_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.annotation_extension_class_label_searchable]
if not isinstance(self.annotation_extension_class_closure, list):
self.annotation_extension_class_closure = [self.annotation_extension_class_closure] if self.annotation_extension_class_closure is not None else []
self.annotation_extension_class_closure = [v if isinstance(v, str) else str(v) for v in self.annotation_extension_class_closure]
if not isinstance(self.annotation_extension_class_closure_label, list):
self.annotation_extension_class_closure_label = [self.annotation_extension_class_closure_label] if self.annotation_extension_class_closure_label is not None else []
self.annotation_extension_class_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.annotation_extension_class_closure_label]
if not isinstance(self.annotation_extension_class_closure_label_searchable, list):
self.annotation_extension_class_closure_label_searchable = [self.annotation_extension_class_closure_label_searchable] if self.annotation_extension_class_closure_label_searchable is not None else []
self.annotation_extension_class_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.annotation_extension_class_closure_label_searchable]
if not isinstance(self.annotation_extension_json, list):
self.annotation_extension_json = [self.annotation_extension_json] if self.annotation_extension_json is not None else []
self.annotation_extension_json = [v if isinstance(v, str) else str(v) for v in self.annotation_extension_json]
if self.panther_family is not None and not isinstance(self.panther_family, SearchableString):
self.panther_family = SearchableString(self.panther_family)
if self.panther_family_searchable is not None and not isinstance(self.panther_family_searchable, SearchableString):
self.panther_family_searchable = SearchableString(self.panther_family_searchable)
if self.panther_family_label is not None and not isinstance(self.panther_family_label, SearchableString):
self.panther_family_label = SearchableString(self.panther_family_label)
if self.panther_family_label_searchable is not None and not isinstance(self.panther_family_label_searchable, SearchableString):
self.panther_family_label_searchable = SearchableString(self.panther_family_label_searchable)
if not isinstance(self.geospatial_x, list):
self.geospatial_x = [self.geospatial_x] if self.geospatial_x is not None else []
self.geospatial_x = [v if isinstance(v, int) else int(v) for v in self.geospatial_x]
if not isinstance(self.geospatial_y, list):
self.geospatial_y = [self.geospatial_y] if self.geospatial_y is not None else []
self.geospatial_y = [v if isinstance(v, int) else int(v) for v in self.geospatial_y]
if not isinstance(self.geospatial_z, list):
self.geospatial_z = [self.geospatial_z] if self.geospatial_z is not None else []
self.geospatial_z = [v if isinstance(v, int) else int(v) for v in self.geospatial_z]
super().__post_init__(**kwargs)
@dataclass
class AnnotationEvidenceAggregate(YAMLRoot):
"""
A description of annotation evidence aggregate for GOlr and AmiGO.
"""
_inherited_slots: ClassVar[List[str]] = []
class_class_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/AnnotationEvidenceAggregate")
class_class_curie: ClassVar[str] = None
class_name: ClassVar[str] = "annotation_evidence_aggregate"
class_model_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/AnnotationEvidenceAggregate")
document_category: Optional[str] = None
id: Optional[str] = None
bioentity: Optional[str] = None
bioentity_label: Optional[Union[str, SearchableString]] = None
bioentity_label_searchable: Optional[Union[str, SearchableString]] = None
annotation_class: Optional[str] = None
annotation_class_label: Optional[Union[str, SearchableString]] = None
annotation_class_label_searchable: Optional[Union[str, SearchableString]] = None
evidence_type_closure: Optional[Union[str, List[str]]] = empty_list()
evidence_with: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon: Optional[str] = None
taxon_label: Optional[Union[str, SearchableString]] = None
taxon_label_searchable: Optional[Union[str, SearchableString]] = None
taxon_closure: Optional[Union[str, List[str]]] = empty_list()
taxon_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
panther_family: Optional[Union[str, SearchableString]] = None
panther_family_searchable: Optional[Union[str, SearchableString]] = None
panther_family_label: Optional[Union[str, SearchableString]] = None
panther_family_label_searchable: Optional[Union[str, SearchableString]] = None
def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
if self.document_category is not None and not isinstance(self.document_category, str):
self.document_category = str(self.document_category)
if self.id is not None and not isinstance(self.id, str):
self.id = str(self.id)
if self.bioentity is not None and not isinstance(self.bioentity, str):
self.bioentity = str(self.bioentity)
if self.bioentity_label is not None and not isinstance(self.bioentity_label, SearchableString):
self.bioentity_label = SearchableString(self.bioentity_label)
if self.bioentity_label_searchable is not None and not isinstance(self.bioentity_label_searchable, SearchableString):
self.bioentity_label_searchable = SearchableString(self.bioentity_label_searchable)
if self.annotation_class is not None and not isinstance(self.annotation_class, str):
self.annotation_class = str(self.annotation_class)
if self.annotation_class_label is not None and not isinstance(self.annotation_class_label, SearchableString):
self.annotation_class_label = SearchableString(self.annotation_class_label)
if self.annotation_class_label_searchable is not None and not isinstance(self.annotation_class_label_searchable, SearchableString):
self.annotation_class_label_searchable = SearchableString(self.annotation_class_label_searchable)
if not isinstance(self.evidence_type_closure, list):
self.evidence_type_closure = [self.evidence_type_closure] if self.evidence_type_closure is not None else []
self.evidence_type_closure = [v if isinstance(v, str) else str(v) for v in self.evidence_type_closure]
if not isinstance(self.evidence_with, list):
self.evidence_with = [self.evidence_with] if self.evidence_with is not None else []
self.evidence_with = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.evidence_with]
if self.taxon is not None and not isinstance(self.taxon, str):
self.taxon = str(self.taxon)
if self.taxon_label is not None and not isinstance(self.taxon_label, SearchableString):
self.taxon_label = SearchableString(self.taxon_label)
if self.taxon_label_searchable is not None and not isinstance(self.taxon_label_searchable, SearchableString):
self.taxon_label_searchable = SearchableString(self.taxon_label_searchable)
if not isinstance(self.taxon_closure, list):
self.taxon_closure = [self.taxon_closure] if self.taxon_closure is not None else []
self.taxon_closure = [v if isinstance(v, str) else str(v) for v in self.taxon_closure]
if not isinstance(self.taxon_closure_label, list):
self.taxon_closure_label = [self.taxon_closure_label] if self.taxon_closure_label is not None else []
self.taxon_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label]
if not isinstance(self.taxon_closure_label_searchable, list):
self.taxon_closure_label_searchable = [self.taxon_closure_label_searchable] if self.taxon_closure_label_searchable is not None else []
self.taxon_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label_searchable]
if self.panther_family is not None and not isinstance(self.panther_family, SearchableString):
self.panther_family = SearchableString(self.panther_family)
if self.panther_family_searchable is not None and not isinstance(self.panther_family_searchable, SearchableString):
self.panther_family_searchable = SearchableString(self.panther_family_searchable)
if self.panther_family_label is not None and not isinstance(self.panther_family_label, SearchableString):
self.panther_family_label = SearchableString(self.panther_family_label)
if self.panther_family_label_searchable is not None and not isinstance(self.panther_family_label_searchable, SearchableString):
self.panther_family_label_searchable = SearchableString(self.panther_family_label_searchable)
super().__post_init__(**kwargs)
@dataclass
class Bioentity(YAMLRoot):
"""
Genes and gene products associated with GO terms.
"""
_inherited_slots: ClassVar[List[str]] = []
class_class_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/Bioentity")
class_class_curie: ClassVar[str] = None
class_name: ClassVar[str] = "bioentity"
class_model_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/Bioentity")
document_category: Optional[str] = None
id: Optional[str] = None
bioentity: Optional[str] = None
bioentity_label: Optional[Union[str, SearchableString]] = None
bioentity_label_searchable: Optional[Union[str, SearchableString]] = None
bioentity_name: Optional[Union[str, SearchableString]] = None
bioentity_name_searchable: Optional[Union[str, SearchableString]] = None
bioentity_internal_id: Optional[str] = None
type: Optional[str] = None
taxon: Optional[str] = None
taxon_label: Optional[Union[str, SearchableString]] = None
taxon_label_searchable: Optional[Union[str, SearchableString]] = None
taxon_closure: Optional[Union[str, List[str]]] = empty_list()
taxon_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_subset_closure: Optional[Union[str, List[str]]] = empty_list()
taxon_subset_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_subset_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
isa_partof_closure: Optional[Union[str, List[str]]] = empty_list()
isa_partof_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
isa_partof_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
regulates_closure: Optional[Union[str, List[str]]] = empty_list()
regulates_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
regulates_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
source: Optional[str] = None
annotation_class_list: Optional[Union[str, List[str]]] = empty_list()
annotation_class_list_label: Optional[Union[str, List[str]]] = empty_list()
synonym: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
synonym_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
panther_family: Optional[Union[str, SearchableString]] = None
panther_family_searchable: Optional[Union[str, SearchableString]] = None
panther_family_label: Optional[Union[str, SearchableString]] = None
panther_family_label_searchable: Optional[Union[str, SearchableString]] = None
phylo_graph_json: Optional[str] = None
database_xref: Optional[Union[str, List[str]]] = empty_list()
def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
if self.document_category is not None and not isinstance(self.document_category, str):
self.document_category = str(self.document_category)
if self.id is not None and not isinstance(self.id, str):
self.id = str(self.id)
if self.bioentity is not None and not isinstance(self.bioentity, str):
self.bioentity = str(self.bioentity)
if self.bioentity_label is not None and not isinstance(self.bioentity_label, SearchableString):
self.bioentity_label = SearchableString(self.bioentity_label)
if self.bioentity_label_searchable is not None and not isinstance(self.bioentity_label_searchable, SearchableString):
self.bioentity_label_searchable = SearchableString(self.bioentity_label_searchable)
if self.bioentity_name is not None and not isinstance(self.bioentity_name, SearchableString):
self.bioentity_name = SearchableString(self.bioentity_name)
if self.bioentity_name_searchable is not None and not isinstance(self.bioentity_name_searchable, SearchableString):
self.bioentity_name_searchable = SearchableString(self.bioentity_name_searchable)
if self.bioentity_internal_id is not None and not isinstance(self.bioentity_internal_id, str):
self.bioentity_internal_id = str(self.bioentity_internal_id)
if self.type is not None and not isinstance(self.type, str):
self.type = str(self.type)
if self.taxon is not None and not isinstance(self.taxon, str):
self.taxon = str(self.taxon)
if self.taxon_label is not None and not isinstance(self.taxon_label, SearchableString):
self.taxon_label = SearchableString(self.taxon_label)
if self.taxon_label_searchable is not None and not isinstance(self.taxon_label_searchable, SearchableString):
self.taxon_label_searchable = SearchableString(self.taxon_label_searchable)
if not isinstance(self.taxon_closure, list):
self.taxon_closure = [self.taxon_closure] if self.taxon_closure is not None else []
self.taxon_closure = [v if isinstance(v, str) else str(v) for v in self.taxon_closure]
if not isinstance(self.taxon_closure_label, list):
self.taxon_closure_label = [self.taxon_closure_label] if self.taxon_closure_label is not None else []
self.taxon_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label]
if not isinstance(self.taxon_closure_label_searchable, list):
self.taxon_closure_label_searchable = [self.taxon_closure_label_searchable] if self.taxon_closure_label_searchable is not None else []
self.taxon_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label_searchable]
if not isinstance(self.taxon_subset_closure, list):
self.taxon_subset_closure = [self.taxon_subset_closure] if self.taxon_subset_closure is not None else []
self.taxon_subset_closure = [v if isinstance(v, str) else str(v) for v in self.taxon_subset_closure]
if not isinstance(self.taxon_subset_closure_label, list):
self.taxon_subset_closure_label = [self.taxon_subset_closure_label] if self.taxon_subset_closure_label is not None else []
self.taxon_subset_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_subset_closure_label]
if not isinstance(self.taxon_subset_closure_label_searchable, list):
self.taxon_subset_closure_label_searchable = [self.taxon_subset_closure_label_searchable] if self.taxon_subset_closure_label_searchable is not None else []
self.taxon_subset_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_subset_closure_label_searchable]
if not isinstance(self.isa_partof_closure, list):
self.isa_partof_closure = [self.isa_partof_closure] if self.isa_partof_closure is not None else []
self.isa_partof_closure = [v if isinstance(v, str) else str(v) for v in self.isa_partof_closure]
if not isinstance(self.isa_partof_closure_label, list):
self.isa_partof_closure_label = [self.isa_partof_closure_label] if self.isa_partof_closure_label is not None else []
self.isa_partof_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.isa_partof_closure_label]
if not isinstance(self.isa_partof_closure_label_searchable, list):
self.isa_partof_closure_label_searchable = [self.isa_partof_closure_label_searchable] if self.isa_partof_closure_label_searchable is not None else []
self.isa_partof_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.isa_partof_closure_label_searchable]
if not isinstance(self.regulates_closure, list):
self.regulates_closure = [self.regulates_closure] if self.regulates_closure is not None else []
self.regulates_closure = [v if isinstance(v, str) else str(v) for v in self.regulates_closure]
if not isinstance(self.regulates_closure_label, list):
self.regulates_closure_label = [self.regulates_closure_label] if self.regulates_closure_label is not None else []
self.regulates_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.regulates_closure_label]
if not isinstance(self.regulates_closure_label_searchable, list):
self.regulates_closure_label_searchable = [self.regulates_closure_label_searchable] if self.regulates_closure_label_searchable is not None else []
self.regulates_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.regulates_closure_label_searchable]
if self.source is not None and not isinstance(self.source, str):
self.source = str(self.source)
if not isinstance(self.annotation_class_list, list):
self.annotation_class_list = [self.annotation_class_list] if self.annotation_class_list is not None else []
self.annotation_class_list = [v if isinstance(v, str) else str(v) for v in self.annotation_class_list]
if not isinstance(self.annotation_class_list_label, list):
self.annotation_class_list_label = [self.annotation_class_list_label] if self.annotation_class_list_label is not None else []
self.annotation_class_list_label = [v if isinstance(v, str) else str(v) for v in self.annotation_class_list_label]
if not isinstance(self.synonym, list):
self.synonym = [self.synonym] if self.synonym is not None else []
self.synonym = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.synonym]
if not isinstance(self.synonym_searchable, list):
self.synonym_searchable = [self.synonym_searchable] if self.synonym_searchable is not None else []
self.synonym_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.synonym_searchable]
if self.panther_family is not None and not isinstance(self.panther_family, SearchableString):
self.panther_family = SearchableString(self.panther_family)
if self.panther_family_searchable is not None and not isinstance(self.panther_family_searchable, SearchableString):
self.panther_family_searchable = SearchableString(self.panther_family_searchable)
if self.panther_family_label is not None and not isinstance(self.panther_family_label, SearchableString):
self.panther_family_label = SearchableString(self.panther_family_label)
if self.panther_family_label_searchable is not None and not isinstance(self.panther_family_label_searchable, SearchableString):
self.panther_family_label_searchable = SearchableString(self.panther_family_label_searchable)
if self.phylo_graph_json is not None and not isinstance(self.phylo_graph_json, str):
self.phylo_graph_json = str(self.phylo_graph_json)
if not isinstance(self.database_xref, list):
self.database_xref = [self.database_xref] if self.database_xref is not None else []
self.database_xref = [v if isinstance(v, str) else str(v) for v in self.database_xref]
super().__post_init__(**kwargs)
@dataclass
class ComplexAnnotation(YAMLRoot):
"""
An individual unit within LEGO. This is <strong>ALPHA</strong> software.
"""
_inherited_slots: ClassVar[List[str]] = []
class_class_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/ComplexAnnotation")
class_class_curie: ClassVar[str] = None
class_name: ClassVar[str] = "complex_annotation"
class_model_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/ComplexAnnotation")
document_category: Optional[str] = None
id: Optional[str] = None
annotation_unit: Optional[str] = None
annotation_unit_label: Optional[Union[str, SearchableString]] = None
annotation_unit_label_searchable: Optional[Union[str, SearchableString]] = None
annotation_group: Optional[str] = None
annotation_group_label: Optional[Union[str, SearchableString]] = None
annotation_group_label_searchable: Optional[Union[str, SearchableString]] = None
annotation_group_url: Optional[str] = None
enabled_by: Optional[Union[str, SearchableString]] = None
enabled_by_searchable: Optional[Union[str, SearchableString]] = None
enabled_by_label: Optional[Union[str, SearchableString]] = None
enabled_by_label_searchable: Optional[Union[str, SearchableString]] = None
panther_family: Optional[Union[str, SearchableString]] = None
panther_family_searchable: Optional[Union[str, SearchableString]] = None
panther_family_label: Optional[Union[str, SearchableString]] = None
panther_family_label_searchable: Optional[Union[str, SearchableString]] = None
taxon: Optional[str] = None
taxon_label: Optional[Union[str, SearchableString]] = None
taxon_label_searchable: Optional[Union[str, SearchableString]] = None
taxon_closure: Optional[Union[str, List[str]]] = empty_list()
taxon_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
function_class: Optional[str] = None
function_class_label: Optional[Union[str, SearchableString]] = None
function_class_label_searchable: Optional[Union[str, SearchableString]] = None
function_class_closure: Optional[Union[str, List[str]]] = empty_list()
function_class_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
function_class_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
process_class: Optional[str] = None
process_class_label: Optional[Union[str, SearchableString]] = None
process_class_label_searchable: Optional[Union[str, SearchableString]] = None
process_class_closure: Optional[Union[str, List[str]]] = empty_list()
process_class_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
process_class_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
location_list: Optional[Union[str, List[str]]] = empty_list()
location_list_label: Optional[Union[str, List[str]]] = empty_list()
location_list_closure: Optional[Union[str, List[str]]] = empty_list()
location_list_closure_label: Optional[Union[str, List[str]]] = empty_list()
owl_blob_json: Optional[str] = None
topology_graph_json: Optional[str] = None
def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
if self.document_category is not None and not isinstance(self.document_category, str):
self.document_category = str(self.document_category)
if self.id is not None and not isinstance(self.id, str):
self.id = str(self.id)
if self.annotation_unit is not None and not isinstance(self.annotation_unit, str):
self.annotation_unit = str(self.annotation_unit)
if self.annotation_unit_label is not None and not isinstance(self.annotation_unit_label, SearchableString):
self.annotation_unit_label = SearchableString(self.annotation_unit_label)
if self.annotation_unit_label_searchable is not None and not isinstance(self.annotation_unit_label_searchable, SearchableString):
self.annotation_unit_label_searchable = SearchableString(self.annotation_unit_label_searchable)
if self.annotation_group is not None and not isinstance(self.annotation_group, str):
self.annotation_group = str(self.annotation_group)
if self.annotation_group_label is not None and not isinstance(self.annotation_group_label, SearchableString):
self.annotation_group_label = SearchableString(self.annotation_group_label)
if self.annotation_group_label_searchable is not None and not isinstance(self.annotation_group_label_searchable, SearchableString):
self.annotation_group_label_searchable = SearchableString(self.annotation_group_label_searchable)
if self.annotation_group_url is not None and not isinstance(self.annotation_group_url, str):
self.annotation_group_url = str(self.annotation_group_url)
if self.enabled_by is not None and not isinstance(self.enabled_by, SearchableString):
self.enabled_by = SearchableString(self.enabled_by)
if self.enabled_by_searchable is not None and not isinstance(self.enabled_by_searchable, SearchableString):
self.enabled_by_searchable = SearchableString(self.enabled_by_searchable)
if self.enabled_by_label is not None and not isinstance(self.enabled_by_label, SearchableString):
self.enabled_by_label = SearchableString(self.enabled_by_label)
if self.enabled_by_label_searchable is not None and not isinstance(self.enabled_by_label_searchable, SearchableString):
self.enabled_by_label_searchable = SearchableString(self.enabled_by_label_searchable)
if self.panther_family is not None and not isinstance(self.panther_family, SearchableString):
self.panther_family = SearchableString(self.panther_family)
if self.panther_family_searchable is not None and not isinstance(self.panther_family_searchable, SearchableString):
self.panther_family_searchable = SearchableString(self.panther_family_searchable)
if self.panther_family_label is not None and not isinstance(self.panther_family_label, SearchableString):
self.panther_family_label = SearchableString(self.panther_family_label)
if self.panther_family_label_searchable is not None and not isinstance(self.panther_family_label_searchable, SearchableString):
self.panther_family_label_searchable = SearchableString(self.panther_family_label_searchable)
if self.taxon is not None and not isinstance(self.taxon, str):
self.taxon = str(self.taxon)
if self.taxon_label is not None and not isinstance(self.taxon_label, SearchableString):
self.taxon_label = SearchableString(self.taxon_label)
if self.taxon_label_searchable is not None and not isinstance(self.taxon_label_searchable, SearchableString):
self.taxon_label_searchable = SearchableString(self.taxon_label_searchable)
if not isinstance(self.taxon_closure, list):
self.taxon_closure = [self.taxon_closure] if self.taxon_closure is not None else []
self.taxon_closure = [v if isinstance(v, str) else str(v) for v in self.taxon_closure]
if not isinstance(self.taxon_closure_label, list):
self.taxon_closure_label = [self.taxon_closure_label] if self.taxon_closure_label is not None else []
self.taxon_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label]
if not isinstance(self.taxon_closure_label_searchable, list):
self.taxon_closure_label_searchable = [self.taxon_closure_label_searchable] if self.taxon_closure_label_searchable is not None else []
self.taxon_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.taxon_closure_label_searchable]
if self.function_class is not None and not isinstance(self.function_class, str):
self.function_class = str(self.function_class)
if self.function_class_label is not None and not isinstance(self.function_class_label, SearchableString):
self.function_class_label = SearchableString(self.function_class_label)
if self.function_class_label_searchable is not None and not isinstance(self.function_class_label_searchable, SearchableString):
self.function_class_label_searchable = SearchableString(self.function_class_label_searchable)
if not isinstance(self.function_class_closure, list):
self.function_class_closure = [self.function_class_closure] if self.function_class_closure is not None else []
self.function_class_closure = [v if isinstance(v, str) else str(v) for v in self.function_class_closure]
if not isinstance(self.function_class_closure_label, list):
self.function_class_closure_label = [self.function_class_closure_label] if self.function_class_closure_label is not None else []
self.function_class_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.function_class_closure_label]
if not isinstance(self.function_class_closure_label_searchable, list):
self.function_class_closure_label_searchable = [self.function_class_closure_label_searchable] if self.function_class_closure_label_searchable is not None else []
self.function_class_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.function_class_closure_label_searchable]
if self.process_class is not None and not isinstance(self.process_class, str):
self.process_class = str(self.process_class)
if self.process_class_label is not None and not isinstance(self.process_class_label, SearchableString):
self.process_class_label = SearchableString(self.process_class_label)
if self.process_class_label_searchable is not None and not isinstance(self.process_class_label_searchable, SearchableString):
self.process_class_label_searchable = SearchableString(self.process_class_label_searchable)
if not isinstance(self.process_class_closure, list):
self.process_class_closure = [self.process_class_closure] if self.process_class_closure is not None else []
self.process_class_closure = [v if isinstance(v, str) else str(v) for v in self.process_class_closure]
if not isinstance(self.process_class_closure_label, list):
self.process_class_closure_label = [self.process_class_closure_label] if self.process_class_closure_label is not None else []
self.process_class_closure_label = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.process_class_closure_label]
if not isinstance(self.process_class_closure_label_searchable, list):
self.process_class_closure_label_searchable = [self.process_class_closure_label_searchable] if self.process_class_closure_label_searchable is not None else []
self.process_class_closure_label_searchable = [v if isinstance(v, SearchableString) else SearchableString(v) for v in self.process_class_closure_label_searchable]
if not isinstance(self.location_list, list):
self.location_list = [self.location_list] if self.location_list is not None else []
self.location_list = [v if isinstance(v, str) else str(v) for v in self.location_list]
if not isinstance(self.location_list_label, list):
self.location_list_label = [self.location_list_label] if self.location_list_label is not None else []
self.location_list_label = [v if isinstance(v, str) else str(v) for v in self.location_list_label]
if not isinstance(self.location_list_closure, list):
self.location_list_closure = [self.location_list_closure] if self.location_list_closure is not None else []
self.location_list_closure = [v if isinstance(v, str) else str(v) for v in self.location_list_closure]
if not isinstance(self.location_list_closure_label, list):
self.location_list_closure_label = [self.location_list_closure_label] if self.location_list_closure_label is not None else []
self.location_list_closure_label = [v if isinstance(v, str) else str(v) for v in self.location_list_closure_label]
if self.owl_blob_json is not None and not isinstance(self.owl_blob_json, str):
self.owl_blob_json = str(self.owl_blob_json)
if self.topology_graph_json is not None and not isinstance(self.topology_graph_json, str):
self.topology_graph_json = str(self.topology_graph_json)
super().__post_init__(**kwargs)
@dataclass
class General(YAMLRoot):
"""
A generic search document to get a general overview of everything.
"""
_inherited_slots: ClassVar[List[str]] = []
class_class_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/General")
class_class_curie: ClassVar[str] = None
class_name: ClassVar[str] = "general"
class_model_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/General")
document_category: Optional[str] = None
id: Optional[str] = None
entity: Optional[str] = None
entity_label: Optional[Union[str, SearchableString]] = None
entity_label_searchable: Optional[Union[str, SearchableString]] = None
category: Optional[str] = None
general_blob: Optional[Union[str, SearchableString]] = None
general_blob_searchable: Optional[Union[str, SearchableString]] = None
def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
if self.document_category is not None and not isinstance(self.document_category, str):
self.document_category = str(self.document_category)
if self.id is not None and not isinstance(self.id, str):
self.id = str(self.id)
if self.entity is not None and not isinstance(self.entity, str):
self.entity = str(self.entity)
if self.entity_label is not None and not isinstance(self.entity_label, SearchableString):
self.entity_label = SearchableString(self.entity_label)
if self.entity_label_searchable is not None and not isinstance(self.entity_label_searchable, SearchableString):
self.entity_label_searchable = SearchableString(self.entity_label_searchable)
if self.category is not None and not isinstance(self.category, str):
self.category = str(self.category)
if self.general_blob is not None and not isinstance(self.general_blob, SearchableString):
self.general_blob = SearchableString(self.general_blob)
if self.general_blob_searchable is not None and not isinstance(self.general_blob_searchable, SearchableString):
self.general_blob_searchable = SearchableString(self.general_blob_searchable)
super().__post_init__(**kwargs)
@dataclass
class ModelAnnotation(YAMLRoot):
"""
An individual unit within a GO-CAM. This is <strong>ALPHA</strong> software.
"""
_inherited_slots: ClassVar[List[str]] = []
class_class_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/ModelAnnotation")
class_class_curie: ClassVar[str] = None
class_name: ClassVar[str] = "model_annotation"
class_model_uri: ClassVar[URIRef] = URIRef("https://w3id.org//None/ModelAnnotation")
document_category: Optional[str] = None
id: Optional[str] = None
annotation_unit: Optional[str] = None
annotation_unit_label: Optional[Union[str, SearchableString]] = None
annotation_unit_label_searchable: Optional[Union[str, SearchableString]] = None
model: Optional[str] = None
model_label: Optional[Union[str, SearchableString]] = None
model_label_searchable: Optional[Union[str, SearchableString]] = None
model_url: Optional[str] = None
model_state: Optional[str] = None
annotation_value: Optional[Union[str, List[str]]] = empty_list()
contributor: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
contributor_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
model_date: Optional[Union[str, SearchableString]] = None
model_date_searchable: Optional[Union[str, SearchableString]] = None
comment: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
comment_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
enabled_by: Optional[Union[str, SearchableString]] = None
enabled_by_searchable: Optional[Union[str, SearchableString]] = None
enabled_by_label: Optional[Union[str, SearchableString]] = None
enabled_by_label_searchable: Optional[Union[str, SearchableString]] = None
enabled_by_complex: Optional[Union[str, SearchableString]] = None
enabled_by_complex_searchable: Optional[Union[str, SearchableString]] = None
enabled_by_complex_label: Optional[Union[str, SearchableString]] = None
enabled_by_complex_label_searchable: Optional[Union[str, SearchableString]] = None
has_participant: Optional[Union[str, SearchableString]] = None
has_participant_searchable: Optional[Union[str, SearchableString]] = None
has_participant_label: Optional[Union[str, SearchableString]] = None
has_participant_label_searchable: Optional[Union[str, SearchableString]] = None
has_complex_participant: Optional[Union[str, SearchableString]] = None
has_complex_participant_searchable: Optional[Union[str, SearchableString]] = None
has_complex_participant_label: Optional[Union[str, SearchableString]] = None
has_complex_participant_label_searchable: Optional[Union[str, SearchableString]] = None
has_output: Optional[Union[str, SearchableString]] = None
has_output_searchable: Optional[Union[str, SearchableString]] = None
has_output_label: Optional[Union[str, SearchableString]] = None
has_output_label_searchable: Optional[Union[str, SearchableString]] = None
has_complex_output: Optional[Union[str, SearchableString]] = None
has_complex_output_searchable: Optional[Union[str, SearchableString]] = None
has_complex_output_label: Optional[Union[str, SearchableString]] = None
has_complex_output_label_searchable: Optional[Union[str, SearchableString]] = None
panther_family: Optional[Union[str, SearchableString]] = None
panther_family_searchable: Optional[Union[str, SearchableString]] = None
panther_family_label: Optional[Union[str, SearchableString]] = None
panther_family_label_searchable: Optional[Union[str, SearchableString]] = None
taxon: Optional[str] = None
taxon_label: Optional[Union[str, SearchableString]] = None
taxon_label_searchable: Optional[Union[str, SearchableString]] = None
taxon_closure: Optional[Union[str, List[str]]] = empty_list()
taxon_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
taxon_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
function_class: Optional[str] = None
function_class_label: Optional[Union[str, SearchableString]] = None
function_class_label_searchable: Optional[Union[str, SearchableString]] = None
function_class_closure: Optional[Union[str, List[str]]] = empty_list()
function_class_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
function_class_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
process_class: Optional[str] = None
process_class_label: Optional[Union[str, SearchableString]] = None
process_class_label_searchable: Optional[Union[str, SearchableString]] = None
process_class_closure: Optional[Union[str, List[str]]] = empty_list()
process_class_closure_label: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()
process_class_closure_label_searchable: Optional[Union[Union[str, SearchableString], List[Union[str, SearchableString]]]] = empty_list()