From 041d27f64dea0756dc25fcc8077af1561fbb72ce Mon Sep 17 00:00:00 2001
From: GitHub Action <action@github.com>
Date: Fri, 24 Sep 2021 02:34:11 +0000
Subject: [PATCH] Updating generated outputs

---
 docs/AltDescription/index.html                |   2 +-
 docs/Annotatable/index.html                   |   2 +-
 docs/Annotation/index.html                    |   4 +-
 docs/ClassDefinition/index.html               |  10 +-
 docs/CommonMetadata/index.html                |   2 +-
 docs/Definition/index.html                    |  10 +-
 docs/Element/index.html                       |  12 +-
 docs/EnumDefinition/index.html                |  10 +-
 docs/Example/index.html                       |   2 +-
 docs/Extensible/index.html                    |   2 +-
 docs/Extension/index.html                     |   2 +-
 docs/LocalName/index.html                     |   2 +-
 docs/Owl/index.html                           |   2 +-
 docs/PermissibleValue/index.html              |   4 +-
 docs/Prefix/index.html                        |   2 +-
 docs/SchemaDefinition/index.html              |  16 +-
 docs/SlotDefinition/index.html                |  10 +-
 docs/SubsetDefinition/index.html              |  10 +-
 docs/TypeDefinition/index.html                |  10 +-
 docs/UniqueKey/index.html                     |   4 +-
 docs/index.html                               |   4 +-
 docs/search/search_index.json                 |   2 +-
 docs/sitemap.xml                              | 328 ++++++------
 docs/sitemap.xml.gz                           | Bin 284 -> 284 bytes
 docs/title/index.html                         |  11 +-
 linkml_model/annotations.py                   |   2 +-
 linkml_model/extensions.py                    |   2 +-
 linkml_model/graphql/meta.graphql             |   9 +-
 linkml_model/json/annotations.json            |   4 +-
 linkml_model/json/extensions.json             |   4 +-
 linkml_model/json/mappings.json               |   4 +-
 linkml_model/json/meta.json                   |  55 +-
 linkml_model/json/types.json                  |   4 +-
 linkml_model/json/validation.json             | 450 ++++++++++++++++
 .../jsonld/annotations.context.jsonld         |   2 +-
 .../jsonld/annotations.model.context.jsonld   |   2 +-
 linkml_model/jsonld/extensions.context.jsonld |   2 +-
 .../jsonld/extensions.model.context.jsonld    |   2 +-
 linkml_model/jsonld/mappings.context.jsonld   |   2 +-
 .../jsonld/mappings.model.context.jsonld      |   2 +-
 linkml_model/jsonld/meta.context.jsonld       |   2 +-
 linkml_model/jsonld/meta.model.context.jsonld |   2 +-
 linkml_model/jsonld/types.context.jsonld      |   2 +-
 .../jsonld/types.model.context.jsonld         |   2 +-
 linkml_model/jsonld/validation.context.jsonld |  60 +++
 .../jsonld/validation.model.context.jsonld    |  60 +++
 linkml_model/jsonschema/meta.schema.json      |  22 +-
 .../jsonschema/validation.schema.json         |  85 +++
 linkml_model/mappings.py                      |   2 +-
 linkml_model/meta.py                          |  10 +-
 linkml_model/owl/meta.owl.ttl                 | 486 +++++++++---------
 linkml_model/rdf/annotations.model.ttl        | 236 ++++-----
 linkml_model/rdf/annotations.ttl              | 184 +++----
 linkml_model/rdf/extensions.model.ttl         | 140 ++---
 linkml_model/rdf/extensions.ttl               | 158 +++---
 linkml_model/rdf/mappings.model.ttl           | 174 +++----
 linkml_model/rdf/mappings.ttl                 | 192 +++----
 linkml_model/rdf/meta.model.ttl               |  51 +-
 linkml_model/rdf/meta.ttl                     |  51 +-
 linkml_model/rdf/types.model.ttl              | 102 ++--
 linkml_model/rdf/types.ttl                    | 140 ++---
 linkml_model/rdf/validation.model.ttl         | 300 +++++++++++
 linkml_model/rdf/validation.ttl               | 300 +++++++++++
 linkml_model/shex/meta.shex                   |   2 +-
 linkml_model/shex/meta.shexj                  |  14 +-
 linkml_model/shex/validation.shex             |  59 +++
 linkml_model/shex/validation.shexj            | 201 ++++++++
 linkml_model/sqlddl/meta.sql                  |  19 +-
 linkml_model/types.py                         |   2 +-
 linkml_model/validation.py                    | 160 ++++++
 70 files changed, 3002 insertions(+), 1225 deletions(-)
 create mode 100644 linkml_model/json/validation.json
 create mode 100644 linkml_model/jsonld/validation.context.jsonld
 create mode 100644 linkml_model/jsonld/validation.model.context.jsonld
 create mode 100644 linkml_model/jsonschema/validation.schema.json
 create mode 100644 linkml_model/rdf/validation.model.ttl
 create mode 100644 linkml_model/rdf/validation.ttl
 create mode 100644 linkml_model/shex/validation.shex
 create mode 100644 linkml_model/shex/validation.shexj
 create mode 100644 linkml_model/validation.py

diff --git a/docs/AltDescription/index.html b/docs/AltDescription/index.html
index 66a114e6..40bfb4c9 100644
--- a/docs/AltDescription/index.html
+++ b/docs/AltDescription/index.html
@@ -95,7 +95,7 @@ <h1 id="class-alt_description">Class: alt_description</h1>
 <p>an attributed description</p>
 <p>URI: <a href="https://w3id.org/linkml/AltDescription">linkml:AltDescription</a></p>
 <p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[Element],[CommonMetadata]++-%20alt_descriptions%200..*&gt;[AltDescription&#124;source(pk):string;description:string],[CommonMetadata]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[Element],[CommonMetadata]++-%20alt_descriptions%200..*&gt;[AltDescription&#124;source(pk):string;description:string],[CommonMetadata]" /></a></p>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../Element/">Element</a></strong> <em><a href="../alt_descriptions/">alt_descriptions</a></em>  <sub>0..*</sub>  <strong><a href="./">AltDescription</a></strong></li>
 </ul>
diff --git a/docs/Annotatable/index.html b/docs/Annotatable/index.html
index 7bd80465..4a1f613b 100644
--- a/docs/Annotatable/index.html
+++ b/docs/Annotatable/index.html
@@ -102,7 +102,7 @@ <h2 id="mixin-for">Mixin for</h2>
 <li><a href="../PermissibleValue/">PermissibleValue</a> (mixin)  - a permissible value, accompanied by intended text and an optional mapping to a concept URI</li>
 <li><a href="../UniqueKey/">UniqueKey</a> (mixin)  - a collection of slots whose values uniquely identify an instance of a class</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <h2 id="attributes">Attributes</h2>
 <h3 id="own">Own</h3>
 <ul>
diff --git a/docs/Annotation/index.html b/docs/Annotation/index.html
index 11c9c41d..e4a26546 100644
--- a/docs/Annotation/index.html
+++ b/docs/Annotation/index.html
@@ -99,11 +99,11 @@ <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Extension/">Extension</a> - a tag/value pair used to add non-model information to an entry</li>
 </ul>
-<h2 id="uses-mixins">Uses Mixins</h2>
+<h2 id="uses-mixin">Uses Mixin</h2>
 <ul>
 <li>mixin: <a href="../Annotatable/">Annotatable</a> - mixin for classes that support annotations</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../Annotatable/">Annotatable</a></strong> <em><a href="../annotations/">annotations</a></em>  <sub>0..*</sub>  <strong><a href="./">Annotation</a></strong></li>
 </ul>
diff --git a/docs/ClassDefinition/index.html b/docs/ClassDefinition/index.html
index ed4169f3..b6497a04 100644
--- a/docs/ClassDefinition/index.html
+++ b/docs/ClassDefinition/index.html
@@ -94,12 +94,12 @@
                 <h1 id="class-class_definition">Class: class_definition</h1>
 <p>the definition of a class or interface</p>
 <p>URI: <a href="https://w3id.org/linkml/ClassDefinition">linkml:ClassDefinition</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Definition],[ClassDefinition]&lt;apply_to%200..*-%20[ClassDefinition&#124;class_uri:uriorcurie%20%3F;subclass_of:uriorcurie%20%3F;tree_root:boolean%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[ClassDefinition]&lt;mixins%200..*-%20[ClassDefinition],[ClassDefinition]&lt;is_a%200..1-%20[ClassDefinition],[SlotDefinition]&lt;defining_slots%200..*-%20[ClassDefinition],[ClassDefinition]&lt;union_of%200..*-%20[ClassDefinition],[SlotDefinition]&lt;attributes%200..*-++[ClassDefinition],[SlotDefinition]&lt;slot_usage%200..*-++[ClassDefinition],[SlotDefinition]&lt;slots%200..*-%20[ClassDefinition],[SchemaDefinition]++-%20classes%200..*&gt;[ClassDefinition],[SlotDefinition]-%20domain%200..1&gt;[ClassDefinition],[SlotDefinition]-%20domain_of%200..*&gt;[ClassDefinition],[Definition]^-[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Definition],[ClassDefinition]&lt;apply_to%200..*-%20[ClassDefinition&#124;class_uri:uriorcurie%20%3F;subclass_of:uriorcurie%20%3F;tree_root:boolean%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[ClassDefinition]&lt;mixins%200..*-%20[ClassDefinition],[ClassDefinition]&lt;is_a%200..1-%20[ClassDefinition],[SlotDefinition]&lt;defining_slots%200..*-%20[ClassDefinition],[ClassDefinition]&lt;union_of%200..*-%20[ClassDefinition],[SlotDefinition]&lt;attributes%200..*-++[ClassDefinition],[SlotDefinition]&lt;slot_usage%200..*-++[ClassDefinition],[SlotDefinition]&lt;slots%200..*-%20[ClassDefinition],[SchemaDefinition]++-%20classes%200..*&gt;[ClassDefinition],[SlotDefinition]-%20domain%200..1&gt;[ClassDefinition],[SlotDefinition]-%20domain_of%200..*&gt;[ClassDefinition],[Definition]^-[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Definition],[ClassDefinition]&lt;apply_to%200..*-%20[ClassDefinition&#124;class_uri:uriorcurie%20%3F;subclass_of:uriorcurie%20%3F;tree_root:boolean%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[ClassDefinition]&lt;mixins%200..*-%20[ClassDefinition],[ClassDefinition]&lt;is_a%200..1-%20[ClassDefinition],[SlotDefinition]&lt;defining_slots%200..*-%20[ClassDefinition],[ClassDefinition]&lt;union_of%200..*-%20[ClassDefinition],[SlotDefinition]&lt;attributes%200..*-++[ClassDefinition],[SlotDefinition]&lt;slot_usage%200..*-++[ClassDefinition],[SlotDefinition]&lt;slots%200..*-%20[ClassDefinition],[SchemaDefinition]++-%20classes%200..*&gt;[ClassDefinition],[SlotDefinition]-%20domain%200..1&gt;[ClassDefinition],[SlotDefinition]-%20domain_of%200..*&gt;[ClassDefinition],[Definition]^-[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Definition],[ClassDefinition]&lt;apply_to%200..*-%20[ClassDefinition&#124;class_uri:uriorcurie%20%3F;subclass_of:uriorcurie%20%3F;tree_root:boolean%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[ClassDefinition]&lt;mixins%200..*-%20[ClassDefinition],[ClassDefinition]&lt;is_a%200..1-%20[ClassDefinition],[SlotDefinition]&lt;defining_slots%200..*-%20[ClassDefinition],[ClassDefinition]&lt;union_of%200..*-%20[ClassDefinition],[SlotDefinition]&lt;attributes%200..*-++[ClassDefinition],[SlotDefinition]&lt;slot_usage%200..*-++[ClassDefinition],[SlotDefinition]&lt;slots%200..*-%20[ClassDefinition],[SchemaDefinition]++-%20classes%200..*&gt;[ClassDefinition],[SlotDefinition]-%20domain%200..1&gt;[ClassDefinition],[SlotDefinition]-%20domain_of%200..*&gt;[ClassDefinition],[Definition]^-[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
 <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Definition/">Definition</a> - base class for definitions</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="./">ClassDefinition</a></strong> <em><a href="../class_definition_apply_to/">class_definition➞apply_to</a></em>  <sub>0..*</sub>  <strong><a href="./">ClassDefinition</a></strong></li>
 <li><strong><a href="./">ClassDefinition</a></strong> <em><a href="../class_definition_is_a/">class_definition➞is_a</a></em>  <sub>0..1</sub>  <strong><a href="./">ClassDefinition</a></strong></li>
@@ -173,6 +173,12 @@ <h3 id="inherited-from-definition">Inherited from definition:</h3>
 <li>in subsets: (owl)</li>
 </ul>
 </li>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/CommonMetadata/index.html b/docs/CommonMetadata/index.html
index 442b2847..6e8de426 100644
--- a/docs/CommonMetadata/index.html
+++ b/docs/CommonMetadata/index.html
@@ -100,7 +100,7 @@ <h2 id="mixin-for">Mixin for</h2>
 <li><a href="../Element/">Element</a> (mixin)  - a named element in the model</li>
 <li><a href="../PermissibleValue/">PermissibleValue</a> (mixin)  - a permissible value, accompanied by intended text and an optional mapping to a concept URI</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <h2 id="attributes">Attributes</h2>
 <h3 id="own">Own</h3>
 <ul>
diff --git a/docs/Definition/index.html b/docs/Definition/index.html
index 49d28629..5b8cac16 100644
--- a/docs/Definition/index.html
+++ b/docs/Definition/index.html
@@ -94,7 +94,7 @@
                 <h1 id="class-definition">Class: definition</h1>
 <p>base class for definitions</p>
 <p>URI: <a href="https://w3id.org/linkml/Definition">linkml:Definition</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[LocalName],[Extension],[Example],[Element],[Definition]&lt;apply_to%200..*-%20[Definition&#124;abstract:boolean%20%3F;mixin:boolean%20%3F;values_from:uriorcurie%20*;created_by:uriorcurie%20%3F;created_on:datetime%20%3F;last_updated_on:datetime%20%3F;modified_by:uriorcurie%20%3F;status:uriorcurie%20%3F;string_serialization:string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[Definition]&lt;mixins%200..*-%20[Definition],[Definition]&lt;is_a%200..1-%20[Definition],[SlotDefinition]-%20owner%200..1&gt;[Definition],[Definition]^-[SlotDefinition],[Definition]^-[ClassDefinition],[Element]^-[Definition],[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[LocalName],[Extension],[Example],[Element],[Definition]&lt;apply_to%200..*-%20[Definition&#124;abstract:boolean%20%3F;mixin:boolean%20%3F;values_from:uriorcurie%20*;created_by:uriorcurie%20%3F;created_on:datetime%20%3F;last_updated_on:datetime%20%3F;modified_by:uriorcurie%20%3F;status:uriorcurie%20%3F;string_serialization:string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[Definition]&lt;mixins%200..*-%20[Definition],[Definition]&lt;is_a%200..1-%20[Definition],[SlotDefinition]-%20owner%200..1&gt;[Definition],[Definition]^-[SlotDefinition],[Definition]^-[ClassDefinition],[Element]^-[Definition],[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[LocalName],[Extension],[Example],[Element],[Definition]&lt;apply_to%200..*-%20[Definition&#124;abstract:boolean%20%3F;mixin:boolean%20%3F;values_from:uriorcurie%20*;created_by:uriorcurie%20%3F;created_on:datetime%20%3F;last_updated_on:datetime%20%3F;modified_by:uriorcurie%20%3F;status:uriorcurie%20%3F;string_serialization:string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[Definition]&lt;mixins%200..*-%20[Definition],[Definition]&lt;is_a%200..1-%20[Definition],[SlotDefinition]-%20owner%200..1&gt;[Definition],[Definition]^-[SlotDefinition],[Definition]^-[ClassDefinition],[Element]^-[Definition],[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SlotDefinition],[LocalName],[Extension],[Example],[Element],[Definition]&lt;apply_to%200..*-%20[Definition&#124;abstract:boolean%20%3F;mixin:boolean%20%3F;values_from:uriorcurie%20*;created_by:uriorcurie%20%3F;created_on:datetime%20%3F;last_updated_on:datetime%20%3F;modified_by:uriorcurie%20%3F;status:uriorcurie%20%3F;string_serialization:string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[Definition]&lt;mixins%200..*-%20[Definition],[Definition]&lt;is_a%200..1-%20[Definition],[SlotDefinition]-%20owner%200..1&gt;[Definition],[Definition]^-[SlotDefinition],[Definition]^-[ClassDefinition],[Element]^-[Definition],[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
 <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Element/">Element</a> - a named element in the model</li>
@@ -104,7 +104,7 @@ <h2 id="children">Children</h2>
 <li><a href="../ClassDefinition/">ClassDefinition</a> - the definition of a class or interface</li>
 <li><a href="../SlotDefinition/">SlotDefinition</a> - the definition of a property or a slot</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="./">Definition</a></strong> <em><a href="../apply_to/">apply_to</a></em>  <sub>0..*</sub>  <strong><a href="./">Definition</a></strong></li>
 <li><strong><a href="./">Definition</a></strong> <em><a href="../is_a/">is_a</a></em>  <sub>0..1</sub>  <strong><a href="./">Definition</a></strong></li>
@@ -187,6 +187,12 @@ <h3 id="inherited-from-element">Inherited from element:</h3>
 <li>in subsets: (owl)</li>
 </ul>
 </li>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/Element/index.html b/docs/Element/index.html
index e546abf2..9c96ce29 100644
--- a/docs/Element/index.html
+++ b/docs/Element/index.html
@@ -94,8 +94,8 @@
                 <h1 id="class-element">Class: element</h1>
 <p>a named element in the model</p>
 <p>URI: <a href="https://w3id.org/linkml/Element">linkml:Element</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Extensible],[Example],[EnumDefinition],[LocalName]&lt;local_names%200..*-++[Element&#124;name:string;id_prefixes:ncname%20*;definition_uri:uriorcurie%20%3F;aliases:string%20*;mappings:uriorcurie%20*;exact_mappings:uriorcurie%20*;close_mappings:uriorcurie%20*;related_mappings:uriorcurie%20*;narrow_mappings:uriorcurie%20*;broad_mappings:uriorcurie%20*;description:string%20%3F;deprecated:string%20%3F;todos:string%20*;notes:string%20*;comments:string%20*;from_schema:uri%20%3F;imported_from:string%20%3F;see_also:uriorcurie%20*;deprecated_element_has_exact_replacement:uriorcurie%20%3F;deprecated_element_has_possible_replacement:uriorcurie%20%3F],[SlotDefinition]-%20range%200..1&gt;[Element],[Element]uses%20-.-&gt;[Extensible],[Element]uses%20-.-&gt;[Annotatable],[Element]uses%20-.-&gt;[CommonMetadata],[Element]^-[TypeDefinition],[Element]^-[SubsetDefinition],[Element]^-[SchemaDefinition],[Element]^-[EnumDefinition],[Element]^-[Definition],[Definition],[CommonMetadata],[Annotation],[Annotatable],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Extensible],[Example],[EnumDefinition],[LocalName]&lt;local_names%200..*-++[Element&#124;name:string;id_prefixes:ncname%20*;definition_uri:uriorcurie%20%3F;aliases:string%20*;mappings:uriorcurie%20*;exact_mappings:uriorcurie%20*;close_mappings:uriorcurie%20*;related_mappings:uriorcurie%20*;narrow_mappings:uriorcurie%20*;broad_mappings:uriorcurie%20*;description:string%20%3F;deprecated:string%20%3F;todos:string%20*;notes:string%20*;comments:string%20*;from_schema:uri%20%3F;imported_from:string%20%3F;see_also:uriorcurie%20*;deprecated_element_has_exact_replacement:uriorcurie%20%3F;deprecated_element_has_possible_replacement:uriorcurie%20%3F],[SlotDefinition]-%20range%200..1&gt;[Element],[Element]uses%20-.-&gt;[Extensible],[Element]uses%20-.-&gt;[Annotatable],[Element]uses%20-.-&gt;[CommonMetadata],[Element]^-[TypeDefinition],[Element]^-[SubsetDefinition],[Element]^-[SchemaDefinition],[Element]^-[EnumDefinition],[Element]^-[Definition],[Definition],[CommonMetadata],[Annotation],[Annotatable],[AltDescription]" /></a></p>
-<h2 id="uses-mixins">Uses Mixins</h2>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Extensible],[Example],[EnumDefinition],[LocalName]&lt;local_names%200..*-++[Element&#124;name:string;title:string%20%3F;id_prefixes:ncname%20*;definition_uri:uriorcurie%20%3F;aliases:string%20*;mappings:uriorcurie%20*;exact_mappings:uriorcurie%20*;close_mappings:uriorcurie%20*;related_mappings:uriorcurie%20*;narrow_mappings:uriorcurie%20*;broad_mappings:uriorcurie%20*;description:string%20%3F;deprecated:string%20%3F;todos:string%20*;notes:string%20*;comments:string%20*;from_schema:uri%20%3F;imported_from:string%20%3F;see_also:uriorcurie%20*;deprecated_element_has_exact_replacement:uriorcurie%20%3F;deprecated_element_has_possible_replacement:uriorcurie%20%3F],[SlotDefinition]-%20range%200..1&gt;[Element],[Element]uses%20-.-&gt;[Extensible],[Element]uses%20-.-&gt;[Annotatable],[Element]uses%20-.-&gt;[CommonMetadata],[Element]^-[TypeDefinition],[Element]^-[SubsetDefinition],[Element]^-[SchemaDefinition],[Element]^-[EnumDefinition],[Element]^-[Definition],[Definition],[CommonMetadata],[Annotation],[Annotatable],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Extensible],[Example],[EnumDefinition],[LocalName]&lt;local_names%200..*-++[Element&#124;name:string;title:string%20%3F;id_prefixes:ncname%20*;definition_uri:uriorcurie%20%3F;aliases:string%20*;mappings:uriorcurie%20*;exact_mappings:uriorcurie%20*;close_mappings:uriorcurie%20*;related_mappings:uriorcurie%20*;narrow_mappings:uriorcurie%20*;broad_mappings:uriorcurie%20*;description:string%20%3F;deprecated:string%20%3F;todos:string%20*;notes:string%20*;comments:string%20*;from_schema:uri%20%3F;imported_from:string%20%3F;see_also:uriorcurie%20*;deprecated_element_has_exact_replacement:uriorcurie%20%3F;deprecated_element_has_possible_replacement:uriorcurie%20%3F],[SlotDefinition]-%20range%200..1&gt;[Element],[Element]uses%20-.-&gt;[Extensible],[Element]uses%20-.-&gt;[Annotatable],[Element]uses%20-.-&gt;[CommonMetadata],[Element]^-[TypeDefinition],[Element]^-[SubsetDefinition],[Element]^-[SchemaDefinition],[Element]^-[EnumDefinition],[Element]^-[Definition],[Definition],[CommonMetadata],[Annotation],[Annotatable],[AltDescription]" /></a></p>
+<h2 id="uses-mixin">Uses Mixin</h2>
 <ul>
 <li>mixin: <a href="../Extensible/">Extensible</a> - mixin for classes that support extension</li>
 <li>mixin: <a href="../Annotatable/">Annotatable</a> - mixin for classes that support annotations</li>
@@ -109,7 +109,7 @@ <h2 id="children">Children</h2>
 <li><a href="../SubsetDefinition/">SubsetDefinition</a> - the name and description of a subset</li>
 <li><a href="../TypeDefinition/">TypeDefinition</a> - A data type definition.</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../SlotDefinition/">SlotDefinition</a></strong> <em><a href="../range/">range</a></em>  <sub>0..1</sub>  <strong><a href="./">Element</a></strong></li>
 </ul>
@@ -122,6 +122,12 @@ <h3 id="own">Own</h3>
 <li>in subsets: (owl)</li>
 </ul>
 </li>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/EnumDefinition/index.html b/docs/EnumDefinition/index.html
index 1da77ac9..031cc4ad 100644
--- a/docs/EnumDefinition/index.html
+++ b/docs/EnumDefinition/index.html
@@ -94,12 +94,12 @@
                 <h1 id="class-enum_definition">Class: enum_definition</h1>
 <p>List of values that constrain the range of a slot</p>
 <p>URI: <a href="https://w3id.org/linkml/EnumDefinition">linkml:EnumDefinition</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SchemaDefinition],[PermissibleValue],[LocalName],[Extension],[Example],[PermissibleValue]&lt;permissible_values%200..*-++[EnumDefinition&#124;code_set:uriorcurie%20%3F;code_set_tag:string%20%3F;code_set_version:string%20%3F;pv_formula:pv_formula_options%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20enums%200..*&gt;[EnumDefinition],[Element]^-[EnumDefinition],[Element],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SchemaDefinition],[PermissibleValue],[LocalName],[Extension],[Example],[PermissibleValue]&lt;permissible_values%200..*-++[EnumDefinition&#124;code_set:uriorcurie%20%3F;code_set_tag:string%20%3F;code_set_version:string%20%3F;pv_formula:pv_formula_options%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20enums%200..*&gt;[EnumDefinition],[Element]^-[EnumDefinition],[Element],[Annotation],[AltDescription]" /></a></p>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SchemaDefinition],[PermissibleValue],[LocalName],[Extension],[Example],[PermissibleValue]&lt;permissible_values%200..*-++[EnumDefinition&#124;code_set:uriorcurie%20%3F;code_set_tag:string%20%3F;code_set_version:string%20%3F;pv_formula:pv_formula_options%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20enums%200..*&gt;[EnumDefinition],[Element]^-[EnumDefinition],[Element],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[SchemaDefinition],[PermissibleValue],[LocalName],[Extension],[Example],[PermissibleValue]&lt;permissible_values%200..*-++[EnumDefinition&#124;code_set:uriorcurie%20%3F;code_set_tag:string%20%3F;code_set_version:string%20%3F;pv_formula:pv_formula_options%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20enums%200..*&gt;[EnumDefinition],[Element]^-[EnumDefinition],[Element],[Annotation],[AltDescription]" /></a></p>
 <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Element/">Element</a> - a named element in the model</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../SchemaDefinition/">SchemaDefinition</a></strong> <em><a href="../enums/">enums</a></em>  <sub>0..*</sub>  <strong><a href="./">EnumDefinition</a></strong></li>
 </ul>
@@ -140,6 +140,12 @@ <h3 id="inherited-from-element">Inherited from element:</h3>
 <li>in subsets: (owl)</li>
 </ul>
 </li>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/Example/index.html b/docs/Example/index.html
index fd7047ab..806cf379 100644
--- a/docs/Example/index.html
+++ b/docs/Example/index.html
@@ -95,7 +95,7 @@ <h1 id="class-example">Class: example</h1>
 <p>usage example and description</p>
 <p>URI: <a href="https://w3id.org/linkml/Example">linkml:Example</a></p>
 <p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[CommonMetadata]++-%20examples%200..*&gt;[Example&#124;value:string%20%3F;description:string%20%3F],[Element],[CommonMetadata]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[CommonMetadata]++-%20examples%200..*&gt;[Example&#124;value:string%20%3F;description:string%20%3F],[Element],[CommonMetadata]" /></a></p>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../Element/">Element</a></strong> <em><a href="../examples/">examples</a></em>  <sub>0..*</sub>  <strong><a href="./">Example</a></strong></li>
 </ul>
diff --git a/docs/Extensible/index.html b/docs/Extensible/index.html
index 8b8655e3..9fa9c861 100644
--- a/docs/Extensible/index.html
+++ b/docs/Extensible/index.html
@@ -101,7 +101,7 @@ <h2 id="mixin-for">Mixin for</h2>
 <li><a href="../PermissibleValue/">PermissibleValue</a> (mixin)  - a permissible value, accompanied by intended text and an optional mapping to a concept URI</li>
 <li><a href="../UniqueKey/">UniqueKey</a> (mixin)  - a collection of slots whose values uniquely identify an instance of a class</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <h2 id="attributes">Attributes</h2>
 <h3 id="own">Own</h3>
 <ul>
diff --git a/docs/Extension/index.html b/docs/Extension/index.html
index c64ab81a..56cc3936 100644
--- a/docs/Extension/index.html
+++ b/docs/Extension/index.html
@@ -99,7 +99,7 @@ <h2 id="children">Children</h2>
 <ul>
 <li><a href="../Annotation/">Annotation</a> - a tag/value pair with the semantics of OWL Annotation</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../Extensible/">Extensible</a></strong> <em><a href="../extensions/">extensions</a></em>  <sub>0..*</sub>  <strong><a href="./">Extension</a></strong></li>
 </ul>
diff --git a/docs/LocalName/index.html b/docs/LocalName/index.html
index 4b39e417..43988694 100644
--- a/docs/LocalName/index.html
+++ b/docs/LocalName/index.html
@@ -95,7 +95,7 @@ <h1 id="class-local_name">Class: local_name</h1>
 <p>an attributed label</p>
 <p>URI: <a href="https://w3id.org/linkml/LocalName">linkml:LocalName</a></p>
 <p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[Element]++-%20local_names%200..*&gt;[LocalName&#124;local_name_source(pk):ncname;local_name_value:string],[Element]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[Element]++-%20local_names%200..*&gt;[LocalName&#124;local_name_source(pk):ncname;local_name_value:string],[Element]" /></a></p>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../Element/">Element</a></strong> <em><a href="../local_names/">local_names</a></em>  <sub>0..*</sub>  <strong><a href="./">LocalName</a></strong></li>
 </ul>
diff --git a/docs/Owl/index.html b/docs/Owl/index.html
index d2916473..b4038c14 100644
--- a/docs/Owl/index.html
+++ b/docs/Owl/index.html
@@ -110,7 +110,7 @@ <h3 id="slots">Slots</h3>
 <li><a href="../source_file/">source_file</a> - name, uri or description of the source of the schema</li>
 <li><a href="../source_file_date/">source_file_date</a> - modification date of the source of the schema</li>
 <li><a href="../source_file_size/">source_file_size</a> - size in bytes of the source of the schema</li>
-<li><a href="../title/">title</a> - the official title of the schema</li>
+<li><a href="../title/">title</a> - the official title of the element</li>
 <li><a href="../version/">version</a> - particular version of schema</li>
 </ul>
 <h3 id="types">Types</h3>
diff --git a/docs/PermissibleValue/index.html b/docs/PermissibleValue/index.html
index cf967af5..aca95e1d 100644
--- a/docs/PermissibleValue/index.html
+++ b/docs/PermissibleValue/index.html
@@ -95,13 +95,13 @@ <h1 id="class-permissible_value">Class: permissible_value</h1>
 <p>a permissible value, accompanied by intended text and an optional mapping to a concept URI</p>
 <p>URI: <a href="https://w3id.org/linkml/PermissibleValue">linkml:PermissibleValue</a></p>
 <p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[PermissibleValue]&lt;mixins%200..*-%20[PermissibleValue&#124;text:string;description:string%20%3F;meaning:uriorcurie%20%3F;deprecated:string%20%3F;todos:string%20*;notes:string%20*;comments:string%20*;from_schema:uri%20%3F;imported_from:string%20%3F;see_also:uriorcurie%20*;deprecated_element_has_exact_replacement:uriorcurie%20%3F;deprecated_element_has_possible_replacement:uriorcurie%20%3F],[PermissibleValue]&lt;is_a%200..1-%20[PermissibleValue],[EnumDefinition]++-%20permissible_values%200..*&gt;[PermissibleValue],[PermissibleValue]uses%20-.-&gt;[Extensible],[PermissibleValue]uses%20-.-&gt;[Annotatable],[PermissibleValue]uses%20-.-&gt;[CommonMetadata],[Extension],[Extensible],[Example],[EnumDefinition],[CommonMetadata],[Annotation],[Annotatable],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SubsetDefinition],[PermissibleValue]&lt;mixins%200..*-%20[PermissibleValue&#124;text:string;description:string%20%3F;meaning:uriorcurie%20%3F;deprecated:string%20%3F;todos:string%20*;notes:string%20*;comments:string%20*;from_schema:uri%20%3F;imported_from:string%20%3F;see_also:uriorcurie%20*;deprecated_element_has_exact_replacement:uriorcurie%20%3F;deprecated_element_has_possible_replacement:uriorcurie%20%3F],[PermissibleValue]&lt;is_a%200..1-%20[PermissibleValue],[EnumDefinition]++-%20permissible_values%200..*&gt;[PermissibleValue],[PermissibleValue]uses%20-.-&gt;[Extensible],[PermissibleValue]uses%20-.-&gt;[Annotatable],[PermissibleValue]uses%20-.-&gt;[CommonMetadata],[Extension],[Extensible],[Example],[EnumDefinition],[CommonMetadata],[Annotation],[Annotatable],[AltDescription]" /></a></p>
-<h2 id="uses-mixins">Uses Mixins</h2>
+<h2 id="uses-mixin">Uses Mixin</h2>
 <ul>
 <li>mixin: <a href="../Extensible/">Extensible</a> - mixin for classes that support extension</li>
 <li>mixin: <a href="../Annotatable/">Annotatable</a> - mixin for classes that support annotations</li>
 <li>mixin: <a href="../CommonMetadata/">CommonMetadata</a> - Generic metadata shared across definitions</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="./">PermissibleValue</a></strong> <em><a href="../permissible_value_is_a/">permissible_value➞is_a</a></em>  <sub>0..1</sub>  <strong><a href="./">PermissibleValue</a></strong></li>
 <li><strong><a href="./">PermissibleValue</a></strong> <em><a href="../permissible_value_mixins/">permissible_value➞mixins</a></em>  <sub>0..*</sub>  <strong><a href="./">PermissibleValue</a></strong></li>
diff --git a/docs/Prefix/index.html b/docs/Prefix/index.html
index 97442247..2821845e 100644
--- a/docs/Prefix/index.html
+++ b/docs/Prefix/index.html
@@ -95,7 +95,7 @@ <h1 id="class-prefix">Class: prefix</h1>
 <p>prefix URI tuple</p>
 <p>URI: <a href="https://w3id.org/linkml/Prefix">linkml:Prefix</a></p>
 <p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SchemaDefinition],[SchemaDefinition]++-%20prefixes%200..*&gt;[Prefix&#124;prefix_prefix(pk):ncname;prefix_reference:uri]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SchemaDefinition],[SchemaDefinition]++-%20prefixes%200..*&gt;[Prefix&#124;prefix_prefix(pk):ncname;prefix_reference:uri]" /></a></p>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../SchemaDefinition/">SchemaDefinition</a></strong> <em><a href="../prefixes/">prefixes</a></em>  <sub>0..*</sub>  <strong><a href="./">Prefix</a></strong></li>
 </ul>
diff --git a/docs/SchemaDefinition/index.html b/docs/SchemaDefinition/index.html
index 1166edd6..6aab64f0 100644
--- a/docs/SchemaDefinition/index.html
+++ b/docs/SchemaDefinition/index.html
@@ -94,12 +94,12 @@
                 <h1 id="class-schema_definition">Class: schema_definition</h1>
 <p>a collection of subset, type, slot and class definitions</p>
 <p>URI: <a href="https://w3id.org/linkml/SchemaDefinition">linkml:SchemaDefinition</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[ClassDefinition]&lt;classes%200..*-++[SchemaDefinition&#124;id:uri;title:string%20%3F;version:string%20%3F;imports:uriorcurie%20*;license:string%20%3F;emit_prefixes:ncname%20*;default_curi_maps:string%20*;default_prefix:string%20%3F;metamodel_version:string%20%3F;source_file:string%20%3F;source_file_date:datetime%20%3F;source_file_size:integer%20%3F;generation_date:datetime%20%3F;name:ncname;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;slots%200..*-++[SchemaDefinition],[EnumDefinition]&lt;enums%200..*-++[SchemaDefinition],[TypeDefinition]&lt;types%200..*-++[SchemaDefinition],[SubsetDefinition]&lt;subsets%200..*-++[SchemaDefinition],[TypeDefinition]&lt;default_range%200..1-%20[SchemaDefinition],[Prefix]&lt;prefixes%200..*-++[SchemaDefinition],[Element]^-[SchemaDefinition],[Prefix],[LocalName],[Extension],[Example],[EnumDefinition],[Element],[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[ClassDefinition]&lt;classes%200..*-++[SchemaDefinition&#124;id:uri;title:string%20%3F;version:string%20%3F;imports:uriorcurie%20*;license:string%20%3F;emit_prefixes:ncname%20*;default_curi_maps:string%20*;default_prefix:string%20%3F;metamodel_version:string%20%3F;source_file:string%20%3F;source_file_date:datetime%20%3F;source_file_size:integer%20%3F;generation_date:datetime%20%3F;name:ncname;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;slots%200..*-++[SchemaDefinition],[EnumDefinition]&lt;enums%200..*-++[SchemaDefinition],[TypeDefinition]&lt;types%200..*-++[SchemaDefinition],[SubsetDefinition]&lt;subsets%200..*-++[SchemaDefinition],[TypeDefinition]&lt;default_range%200..1-%20[SchemaDefinition],[Prefix]&lt;prefixes%200..*-++[SchemaDefinition],[Element]^-[SchemaDefinition],[Prefix],[LocalName],[Extension],[Example],[EnumDefinition],[Element],[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[ClassDefinition]&lt;classes%200..*-++[SchemaDefinition&#124;id:uri;version:string%20%3F;imports:uriorcurie%20*;license:string%20%3F;emit_prefixes:ncname%20*;default_curi_maps:string%20*;default_prefix:string%20%3F;metamodel_version:string%20%3F;source_file:string%20%3F;source_file_date:datetime%20%3F;source_file_size:integer%20%3F;generation_date:datetime%20%3F;name:ncname;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;slots%200..*-++[SchemaDefinition],[EnumDefinition]&lt;enums%200..*-++[SchemaDefinition],[TypeDefinition]&lt;types%200..*-++[SchemaDefinition],[SubsetDefinition]&lt;subsets%200..*-++[SchemaDefinition],[TypeDefinition]&lt;default_range%200..1-%20[SchemaDefinition],[Prefix]&lt;prefixes%200..*-++[SchemaDefinition],[Element]^-[SchemaDefinition],[Prefix],[LocalName],[Extension],[Example],[EnumDefinition],[Element],[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition],[SubsetDefinition],[SlotDefinition],[ClassDefinition]&lt;classes%200..*-++[SchemaDefinition&#124;id:uri;version:string%20%3F;imports:uriorcurie%20*;license:string%20%3F;emit_prefixes:ncname%20*;default_curi_maps:string%20*;default_prefix:string%20%3F;metamodel_version:string%20%3F;source_file:string%20%3F;source_file_date:datetime%20%3F;source_file_size:integer%20%3F;generation_date:datetime%20%3F;name:ncname;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;slots%200..*-++[SchemaDefinition],[EnumDefinition]&lt;enums%200..*-++[SchemaDefinition],[TypeDefinition]&lt;types%200..*-++[SchemaDefinition],[SubsetDefinition]&lt;subsets%200..*-++[SchemaDefinition],[TypeDefinition]&lt;default_range%200..1-%20[SchemaDefinition],[Prefix]&lt;prefixes%200..*-++[SchemaDefinition],[Element]^-[SchemaDefinition],[Prefix],[LocalName],[Extension],[Example],[EnumDefinition],[Element],[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
 <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Element/">Element</a> - a named element in the model</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <h2 id="attributes">Attributes</h2>
 <h3 id="own">Own</h3>
 <ul>
@@ -108,12 +108,6 @@ <h3 id="own">Own</h3>
 <li>Range: <a href="../Uri/">Uri</a></li>
 </ul>
 </li>
-<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
-<li>Description: the official title of the schema</li>
-<li>Range: <a href="../String/">String</a></li>
-<li>in subsets: (owl)</li>
-</ul>
-</li>
 <li><a href="../version/">version</a>  <sub>0..1</sub><ul>
 <li>Description: particular version of schema</li>
 <li>Range: <a href="../String/">String</a></li>
@@ -218,6 +212,12 @@ <h3 id="own">Own</h3>
 </ul>
 <h3 id="inherited-from-element">Inherited from element:</h3>
 <ul>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/SlotDefinition/index.html b/docs/SlotDefinition/index.html
index 9ffd6093..9f6100ba 100644
--- a/docs/SlotDefinition/index.html
+++ b/docs/SlotDefinition/index.html
@@ -94,12 +94,12 @@
                 <h1 id="class-slot_definition">Class: slot_definition</h1>
 <p>the definition of a property or a slot</p>
 <p>URI: <a href="https://w3id.org/linkml/SlotDefinition">linkml:SlotDefinition</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[UniqueKey],[SubsetDefinition],[SlotDefinition]&lt;apply_to%200..*-%20[SlotDefinition&#124;singular_name:string%20%3F;slot_uri:uriorcurie%20%3F;multivalued:boolean%20%3F;inherited:boolean%20%3F;readonly:string%20%3F;ifabsent:string%20%3F;required:boolean%20%3F;recommended:boolean%20%3F;inlined:boolean%20%3F;inlined_as_list:boolean%20%3F;key:boolean%20%3F;identifier:boolean%20%3F;designates_type:boolean%20%3F;alias:string%20%3F;symmetric:boolean%20%3F;is_class_field:boolean%20%3F;role:string%20%3F;is_usage_slot:boolean%20%3F;usage_slot_name:string%20%3F;minimum_value:integer%20%3F;maximum_value:integer%20%3F;pattern:string%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;mixins%200..*-%20[SlotDefinition],[SlotDefinition]&lt;is_a%200..1-%20[SlotDefinition],[SlotDefinition]&lt;inverse%200..1-%20[SlotDefinition],[SlotDefinition]&lt;subproperty_of%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain_of%200..*-%20[SlotDefinition],[Definition]&lt;owner%200..1-%20[SlotDefinition],[Element]&lt;range%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain%200..1-%20[SlotDefinition],[ClassDefinition]++-%20attributes%200..*&gt;[SlotDefinition],[ClassDefinition]-%20defining_slots%200..*&gt;[SlotDefinition],[SchemaDefinition]++-%20slots%200..*&gt;[SlotDefinition],[ClassDefinition]++-%20slot_usage%200..*&gt;[SlotDefinition],[ClassDefinition]-%20slots%200..*&gt;[SlotDefinition],[UniqueKey]-%20unique_key_slots%201..*&gt;[SlotDefinition],[Definition]^-[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Definition],[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[UniqueKey],[SubsetDefinition],[SlotDefinition]&lt;apply_to%200..*-%20[SlotDefinition&#124;singular_name:string%20%3F;slot_uri:uriorcurie%20%3F;multivalued:boolean%20%3F;inherited:boolean%20%3F;readonly:string%20%3F;ifabsent:string%20%3F;required:boolean%20%3F;recommended:boolean%20%3F;inlined:boolean%20%3F;inlined_as_list:boolean%20%3F;key:boolean%20%3F;identifier:boolean%20%3F;designates_type:boolean%20%3F;alias:string%20%3F;symmetric:boolean%20%3F;is_class_field:boolean%20%3F;role:string%20%3F;is_usage_slot:boolean%20%3F;usage_slot_name:string%20%3F;minimum_value:integer%20%3F;maximum_value:integer%20%3F;pattern:string%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;mixins%200..*-%20[SlotDefinition],[SlotDefinition]&lt;is_a%200..1-%20[SlotDefinition],[SlotDefinition]&lt;inverse%200..1-%20[SlotDefinition],[SlotDefinition]&lt;subproperty_of%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain_of%200..*-%20[SlotDefinition],[Definition]&lt;owner%200..1-%20[SlotDefinition],[Element]&lt;range%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain%200..1-%20[SlotDefinition],[ClassDefinition]++-%20attributes%200..*&gt;[SlotDefinition],[ClassDefinition]-%20defining_slots%200..*&gt;[SlotDefinition],[SchemaDefinition]++-%20slots%200..*&gt;[SlotDefinition],[ClassDefinition]++-%20slot_usage%200..*&gt;[SlotDefinition],[ClassDefinition]-%20slots%200..*&gt;[SlotDefinition],[UniqueKey]-%20unique_key_slots%201..*&gt;[SlotDefinition],[Definition]^-[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Definition],[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[UniqueKey],[SubsetDefinition],[SlotDefinition]&lt;apply_to%200..*-%20[SlotDefinition&#124;singular_name:string%20%3F;slot_uri:uriorcurie%20%3F;multivalued:boolean%20%3F;inherited:boolean%20%3F;readonly:string%20%3F;ifabsent:string%20%3F;required:boolean%20%3F;recommended:boolean%20%3F;inlined:boolean%20%3F;inlined_as_list:boolean%20%3F;key:boolean%20%3F;identifier:boolean%20%3F;designates_type:boolean%20%3F;alias:string%20%3F;symmetric:boolean%20%3F;is_class_field:boolean%20%3F;role:string%20%3F;is_usage_slot:boolean%20%3F;usage_slot_name:string%20%3F;minimum_value:integer%20%3F;maximum_value:integer%20%3F;pattern:string%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;mixins%200..*-%20[SlotDefinition],[SlotDefinition]&lt;is_a%200..1-%20[SlotDefinition],[SlotDefinition]&lt;inverse%200..1-%20[SlotDefinition],[SlotDefinition]&lt;subproperty_of%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain_of%200..*-%20[SlotDefinition],[Definition]&lt;owner%200..1-%20[SlotDefinition],[Element]&lt;range%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain%200..1-%20[SlotDefinition],[ClassDefinition]++-%20attributes%200..*&gt;[SlotDefinition],[ClassDefinition]-%20defining_slots%200..*&gt;[SlotDefinition],[SchemaDefinition]++-%20slots%200..*&gt;[SlotDefinition],[ClassDefinition]++-%20slot_usage%200..*&gt;[SlotDefinition],[ClassDefinition]-%20slots%200..*&gt;[SlotDefinition],[UniqueKey]-%20unique_key_slots%201..*&gt;[SlotDefinition],[Definition]^-[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Definition],[ClassDefinition],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[UniqueKey],[SubsetDefinition],[SlotDefinition]&lt;apply_to%200..*-%20[SlotDefinition&#124;singular_name:string%20%3F;slot_uri:uriorcurie%20%3F;multivalued:boolean%20%3F;inherited:boolean%20%3F;readonly:string%20%3F;ifabsent:string%20%3F;required:boolean%20%3F;recommended:boolean%20%3F;inlined:boolean%20%3F;inlined_as_list:boolean%20%3F;key:boolean%20%3F;identifier:boolean%20%3F;designates_type:boolean%20%3F;alias:string%20%3F;symmetric:boolean%20%3F;is_class_field:boolean%20%3F;role:string%20%3F;is_usage_slot:boolean%20%3F;usage_slot_name:string%20%3F;minimum_value:integer%20%3F;maximum_value:integer%20%3F;pattern:string%20%3F;abstract(i):boolean%20%3F;mixin(i):boolean%20%3F;values_from(i):uriorcurie%20*;created_by(i):uriorcurie%20%3F;created_on(i):datetime%20%3F;last_updated_on(i):datetime%20%3F;modified_by(i):uriorcurie%20%3F;status(i):uriorcurie%20%3F;string_serialization(i):string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SlotDefinition]&lt;mixins%200..*-%20[SlotDefinition],[SlotDefinition]&lt;is_a%200..1-%20[SlotDefinition],[SlotDefinition]&lt;inverse%200..1-%20[SlotDefinition],[SlotDefinition]&lt;subproperty_of%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain_of%200..*-%20[SlotDefinition],[Definition]&lt;owner%200..1-%20[SlotDefinition],[Element]&lt;range%200..1-%20[SlotDefinition],[ClassDefinition]&lt;domain%200..1-%20[SlotDefinition],[ClassDefinition]++-%20attributes%200..*&gt;[SlotDefinition],[ClassDefinition]-%20defining_slots%200..*&gt;[SlotDefinition],[SchemaDefinition]++-%20slots%200..*&gt;[SlotDefinition],[ClassDefinition]++-%20slot_usage%200..*&gt;[SlotDefinition],[ClassDefinition]-%20slots%200..*&gt;[SlotDefinition],[UniqueKey]-%20unique_key_slots%201..*&gt;[SlotDefinition],[Definition]^-[SlotDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Definition],[ClassDefinition],[Annotation],[AltDescription]" /></a></p>
 <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Definition/">Definition</a> - base class for definitions</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../ClassDefinition/">ClassDefinition</a></strong> <em><a href="../attributes/">attributes</a></em>  <sub>0..*</sub>  <strong><a href="./">SlotDefinition</a></strong></li>
 <li><strong><a href="../ClassDefinition/">ClassDefinition</a></strong> <em><a href="../defining_slots/">defining_slots</a></em>  <sub>0..*</sub>  <strong><a href="./">SlotDefinition</a></strong></li>
@@ -308,6 +308,12 @@ <h3 id="inherited-from-definition">Inherited from definition:</h3>
 <li>in subsets: (owl)</li>
 </ul>
 </li>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/SubsetDefinition/index.html b/docs/SubsetDefinition/index.html
index 6bcbf657..aed670b3 100644
--- a/docs/SubsetDefinition/index.html
+++ b/docs/SubsetDefinition/index.html
@@ -94,12 +94,12 @@
                 <h1 id="class-subset_definition">Class: subset_definition</h1>
 <p>the name and description of a subset</p>
 <p>URI: <a href="https://w3id.org/linkml/SubsetDefinition">linkml:SubsetDefinition</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[CommonMetadata]-%20in_subset%200..*&gt;[SubsetDefinition&#124;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20subsets%200..*&gt;[SubsetDefinition],[Element]^-[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[CommonMetadata],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[CommonMetadata]-%20in_subset%200..*&gt;[SubsetDefinition&#124;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20subsets%200..*&gt;[SubsetDefinition],[Element]^-[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[CommonMetadata],[Annotation],[AltDescription]" /></a></p>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[CommonMetadata]-%20in_subset%200..*&gt;[SubsetDefinition&#124;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20subsets%200..*&gt;[SubsetDefinition],[Element]^-[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[CommonMetadata],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[CommonMetadata]-%20in_subset%200..*&gt;[SubsetDefinition&#124;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]++-%20subsets%200..*&gt;[SubsetDefinition],[Element]^-[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[CommonMetadata],[Annotation],[AltDescription]" /></a></p>
 <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Element/">Element</a> - a named element in the model</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../Element/">Element</a></strong> <em><a href="../in_subset/">in_subset</a></em>  <sub>0..*</sub>  <strong><a href="./">SubsetDefinition</a></strong></li>
 <li><strong><a href="../SchemaDefinition/">SchemaDefinition</a></strong> <em><a href="../subsets/">subsets</a></em>  <sub>0..*</sub>  <strong><a href="./">SubsetDefinition</a></strong></li>
@@ -113,6 +113,12 @@ <h3 id="inherited-from-element">Inherited from element:</h3>
 <li>in subsets: (owl)</li>
 </ul>
 </li>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/TypeDefinition/index.html b/docs/TypeDefinition/index.html
index 993ad19d..8bbf1d51 100644
--- a/docs/TypeDefinition/index.html
+++ b/docs/TypeDefinition/index.html
@@ -94,12 +94,12 @@
                 <h1 id="class-type_definition">Class: type_definition</h1>
 <p>A data type definition.</p>
 <p>URI: <a href="https://w3id.org/linkml/TypeDefinition">linkml:TypeDefinition</a></p>
-<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition]&lt;typeof%200..1-%20[TypeDefinition&#124;base:string%20%3F;uri:uriorcurie%20%3F;repr:string%20%3F;pattern:string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]-%20default_range%200..1&gt;[TypeDefinition],[SchemaDefinition]++-%20types%200..*&gt;[TypeDefinition],[Element]^-[TypeDefinition],[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition]&lt;typeof%200..1-%20[TypeDefinition&#124;base:string%20%3F;uri:uriorcurie%20%3F;repr:string%20%3F;pattern:string%20%3F;name(i):string;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]-%20default_range%200..1&gt;[TypeDefinition],[SchemaDefinition]++-%20types%200..*&gt;[TypeDefinition],[Element]^-[TypeDefinition],[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Annotation],[AltDescription]" /></a></p>
+<p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition]&lt;typeof%200..1-%20[TypeDefinition&#124;base:string%20%3F;uri:uriorcurie%20%3F;repr:string%20%3F;pattern:string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]-%20default_range%200..1&gt;[TypeDefinition],[SchemaDefinition]++-%20types%200..*&gt;[TypeDefinition],[Element]^-[TypeDefinition],[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Annotation],[AltDescription]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[TypeDefinition]&lt;typeof%200..1-%20[TypeDefinition&#124;base:string%20%3F;uri:uriorcurie%20%3F;repr:string%20%3F;pattern:string%20%3F;name(i):string;title(i):string%20%3F;id_prefixes(i):ncname%20*;definition_uri(i):uriorcurie%20%3F;aliases(i):string%20*;mappings(i):uriorcurie%20*;exact_mappings(i):uriorcurie%20*;close_mappings(i):uriorcurie%20*;related_mappings(i):uriorcurie%20*;narrow_mappings(i):uriorcurie%20*;broad_mappings(i):uriorcurie%20*;description(i):string%20%3F;deprecated(i):string%20%3F;todos(i):string%20*;notes(i):string%20*;comments(i):string%20*;from_schema(i):uri%20%3F;imported_from(i):string%20%3F;see_also(i):uriorcurie%20*;deprecated_element_has_exact_replacement(i):uriorcurie%20%3F;deprecated_element_has_possible_replacement(i):uriorcurie%20%3F],[SchemaDefinition]-%20default_range%200..1&gt;[TypeDefinition],[SchemaDefinition]++-%20types%200..*&gt;[TypeDefinition],[Element]^-[TypeDefinition],[SubsetDefinition],[SchemaDefinition],[LocalName],[Extension],[Example],[Element],[Annotation],[AltDescription]" /></a></p>
 <h2 id="parents">Parents</h2>
 <ul>
 <li>is_a: <a href="../Element/">Element</a> - a named element in the model</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../SchemaDefinition/">SchemaDefinition</a></strong> <em><a href="../default_range/">default_range</a></em>  <sub>0..1</sub>  <strong><a href="./">TypeDefinition</a></strong></li>
 <li><strong><a href="./">TypeDefinition</a></strong> <em><a href="../typeof/">typeof</a></em>  <sub>0..1</sub>  <strong><a href="./">TypeDefinition</a></strong></li>
@@ -142,6 +142,12 @@ <h3 id="inherited-from-element">Inherited from element:</h3>
 <li>in subsets: (owl)</li>
 </ul>
 </li>
+<li><a href="../title/">title</a>  <sub>0..1</sub><ul>
+<li>Description: the official title of the element</li>
+<li>Range: <a href="../String/">String</a></li>
+<li>in subsets: (owl)</li>
+</ul>
+</li>
 <li><a href="../id_prefixes/">id_prefixes</a>  <sub>0..*</sub><ul>
 <li>Description: the identifier of this class or slot must begin with the URIs referenced by this prefix</li>
 <li>Range: <a href="../Ncname/">Ncname</a></li>
diff --git a/docs/UniqueKey/index.html b/docs/UniqueKey/index.html
index a4111565..57944ce3 100644
--- a/docs/UniqueKey/index.html
+++ b/docs/UniqueKey/index.html
@@ -95,12 +95,12 @@ <h1 id="class-unique_key">Class: unique_key</h1>
 <p>a collection of slots whose values uniquely identify an instance of a class</p>
 <p>URI: <a href="https://w3id.org/linkml/UniqueKey">linkml:UniqueKey</a></p>
 <p><a href="https://yuml.me/diagram/nofunky;dir:TB/class/[SlotDefinition]&lt;unique_key_slots%201..*-%20[UniqueKey],[UniqueKey]uses%20-.-&gt;[Extensible],[UniqueKey]uses%20-.-&gt;[Annotatable],[SlotDefinition],[Extension],[Extensible],[ClassDefinition],[Annotation],[Annotatable]"><img alt="img" src="https://yuml.me/diagram/nofunky;dir:TB/class/[SlotDefinition]&lt;unique_key_slots%201..*-%20[UniqueKey],[UniqueKey]uses%20-.-&gt;[Extensible],[UniqueKey]uses%20-.-&gt;[Annotatable],[SlotDefinition],[Extension],[Extensible],[ClassDefinition],[Annotation],[Annotatable]" /></a></p>
-<h2 id="uses-mixins">Uses Mixins</h2>
+<h2 id="uses-mixin">Uses Mixin</h2>
 <ul>
 <li>mixin: <a href="../Extensible/">Extensible</a> - mixin for classes that support extension</li>
 <li>mixin: <a href="../Annotatable/">Annotatable</a> - mixin for classes that support annotations</li>
 </ul>
-<h2 id="referenced-by-class">Referenced by class</h2>
+<h2 id="referenced-by-class">Referenced by Class</h2>
 <ul>
 <li><strong><a href="../ClassDefinition/">ClassDefinition</a></strong> <em><a href="../unique_keys/">unique_keys</a></em>  <sub>0..*</sub>  <strong><a href="./">UniqueKey</a></strong></li>
 </ul>
diff --git a/docs/index.html b/docs/index.html
index 0496fc81..a80764f2 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -270,7 +270,7 @@ <h3 id="slots">Slots</h3>
 <li><a href="subsets/">subsets</a> - list of subsets referenced in this model</li>
 <li><a href="symmetric/">symmetric</a> - True means that any instance of  d s r implies that there is also an instance of r s d</li>
 <li><a href="text/">text</a></li>
-<li><a href="title/">title</a> - the official title of the schema</li>
+<li><a href="title/">title</a> - the official title of the element</li>
 <li><a href="todos/">todos</a> - Outstanding issue that needs resolution</li>
 <li><a href="tree_root/">tree_root</a> - indicator that this is the root class in tree structures</li>
 <li><a href="type_uri/">type_definition➞uri</a> - The uri that defines the possible values for the type definition</li>
@@ -385,5 +385,5 @@ <h4 id="defined">Defined</h4>
 
 <!--
 MkDocs version : 1.2.2
-Build Date UTC : 2021-09-17 20:24:07.818137+00:00
+Build Date UTC : 2021-09-24 02:30:50.939260+00:00
 -->
diff --git a/docs/search/search_index.json b/docs/search/search_index.json
index 077f57dd..abef8a7b 100644
--- a/docs/search/search_index.json
+++ b/docs/search/search_index.json
@@ -1 +1 @@
-{"config":{"indexing":"full","lang":["en"],"min_search_length":3,"prebuild_index":false,"separator":"[\\s\\-]+"},"docs":[{"location":"","text":"meta schema A metamodel for defining linked open data schemas Classes AltDescription - an attributed description Element - a named element in the model Definition - base class for definitions ClassDefinition - the definition of a class or interface SlotDefinition - the definition of a property or a slot EnumDefinition - List of values that constrain the range of a slot SchemaDefinition - a collection of subset, type, slot and class definitions SubsetDefinition - the name and description of a subset TypeDefinition - A data type definition. Example - usage example and description Extension - a tag/value pair used to add non-model information to an entry Annotation - a tag/value pair with the semantics of OWL Annotation LocalName - an attributed label PermissibleValue - a permissible value, accompanied by intended text and an optional mapping to a concept URI Prefix - prefix URI tuple UniqueKey - a collection of slots whose values uniquely identify an instance of a class Mixins Annotatable - mixin for classes that support annotations CommonMetadata - Generic metadata shared across definitions Extensible - mixin for classes that support extension Slots abstract - an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. alias - the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. aliases alt_description\u279esource - the source of an attributed description alt_description\u279edescription - text of an attributed description alt_descriptions apply_to - Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. class_definition\u279eapply_to slot_definition\u279eapply_to attributes - Inline definition of slots base - python base type that implements this type definition class_uri - URI of the class in an RDF environment classes - class definitions code_set - the identifier of an enumeration code set. code_set_tag - the version tag of the enumeration code set code_set_version - the version identifier of the enumeration code set comments - notes and comments about an element intended for external consumption created_by - agent that created the element created_on - time at which the element was created default_curi_maps - ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables default_prefix - default and base prefix -- used for ':' identifiers, @base and @vocab default_range - default slot range to be used if range element is omitted from a slot definition defining_slots - The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom definition_uri - the \"native\" URI of the element deprecated - Description of why and when this element will no longer be used deprecated element has exact replacement - When an element is deprecated, it can be automatically replaced by this uri or curie deprecated element has possible replacement - When an element is deprecated, it can be potentially replaced by this uri or curie description - a description of the element's purpose and use designates_type - True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition domain - defines the type of the subject of the slot. Given the following slot definition domain_of - the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context emit_prefixes - a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. enums - enumerated ranges examples - example usages of an element extension\u279etag - a tag associated with an extension extension\u279evalue - the actual annotation extensions - a tag/text tuple attached to an arbitrary element annotations - a collection of tag/text tuples with the semantics of OWL Annotation from_schema - id of the schema that defined the element generation_date - date and time that the schema was loaded/generated id - The official schema URI id_prefixes - the identifier of this class or slot must begin with the URIs referenced by this prefix identifier - True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container ifabsent - function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: imported_from - the imports entry that this element was derived from. Empty means primary source imports - other schemas that are included in this schema in_subset - used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) inherited - true means that the value of a slot is inherited by subclasses inlined - True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. inlined_as_list - True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. inverse - indicates that any instance of d s r implies that there is also an instance of r s' d is_a - specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded class_definition\u279eis_a permissible_value\u279eis_a slot_definition\u279eis_a is_class_field - indicates that any instance, i, the domain of this slot will include an assert of i s range is_usage_slot - True means that this slot was defined in a slot_usage situation key - True means that the key slot(s) uniquely identify the container. last_updated_on - time at which the element was last updated license - license for the schema local_name_source - the ncname of the source of the name local_name_value - a name assigned to an element in a given ontology local_names mappings - A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. broad mappings - A list of terms from different schemas or terminology systems that have broader meaning. close mappings - A list of terms from different schemas or terminology systems that have close meaning. exact mappings - A list of terms from different schemas or terminology systems that have identical meaning. narrow mappings - A list of terms from different schemas or terminology systems that have narrower meaning. related mappings - A list of terms from different schemas or terminology systems that have related meaning. maximum_value - for slots with ranges of type number, the value must be equal to or lowe than this meaning - the value meaning (in the 11179 sense) of a permissible value metamodel_version - Version of the metamodel used to load the schema minimum_value - for slots with ranges of type number, the value must be equal to or higher than this mixin - this slot or class can only be used as a mixin. mixins - List of definitions to be mixed in. Targets may be any definition of the same type class_definition\u279emixins permissible_value\u279emixins slot_definition\u279emixins modified_by - agent that modified the element multivalued - true means that slot can have more than one value name - the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. schema_definition\u279ename notes - editorial notes about an element intended for internal consumption owner - the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot pattern - the string value of the slot must conform to this regular expression permissible_values - A list of possible values for a slot range prefix_prefix - the nsname (sans ':' for a given prefix) prefix_reference - A URI associated with a given prefix prefixes - prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes pv_formula - Defines the specific formula to be used to generate the permissible values. range - defines the type of the object of the slot. Given the following slot definition readonly - If present, slot is read only. Text explains why recommended - true means that the slot should be present in the loaded definition, but this is not required repr - the name of the python object that implements this type definition required - true means that the slot must be present in the loaded definition role - the role played by the slot range see_also - a reference singular_name - a name that is used in the singular form schema_definition\u279eslots - slot definitions slot_uri - predicate of this slot for semantic web application slot_usage - the redefinition of a slot in the context of the containing class definition. slots - list of slot names that are applicable to a class source_file - name, uri or description of the source of the schema source_file_date - modification date of the source of the schema source_file_size - size in bytes of the source of the schema status - status of the element string_serialization - Used on a slot that stores the string serialization of the containing object. 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These are expanded using the values of those slots. subclass_of - rdfs:subClassOf to be emitted in OWL generation subproperty_of - Ontology property which this slot is a subproperty of subsets - list of subsets referenced in this model symmetric - True means that any instance of d s r implies that there is also an instance of r s d text title - the official title of the schema todos - Outstanding issue that needs resolution tree_root - indicator that this is the root class in tree structures type_definition\u279euri - The uri that defines the possible values for the type definition typeof - Names a parent type types - data types used in the model union_of - indicates that the domain class consists exactly of the members of the classes in the range unique_key_slots - list of slot names that form a key unique_keys - Set of unique keys for this slot usage_slot_name - The name of the slot referenced in the slot_usage value - example value example\u279edescription - description of what the value is doing values_from - the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot version - particular version of schema Enums pv_formula_options - The formula used to generate the set of permissible values from the code_set values Subsets Owl - Set of slots that appear in the OWL representation of a model Types Built in Bool Decimal ElementIdentifier NCName NodeIdentifier URI URIorCURIE XSDDate XSDDateTime XSDTime float int str Defined Boolean ( Bool ) - A binary (true or false) value Date ( XSDDate ) - a date (year, month and day) in an idealized calendar Datetime ( XSDDateTime ) - The combination of a date and time Decimal ( Decimal ) - A real number with arbitrary precision that conforms to the xsd:decimal specification Double ( float ) - A real number that conforms to the xsd:double specification Float ( float ) - A real number that conforms to the xsd:float specification Integer ( int ) - An integer Ncname ( NCName ) - Prefix part of CURIE Nodeidentifier ( NodeIdentifier ) - A URI, CURIE or BNODE that represents a node in a model. Objectidentifier ( ElementIdentifier ) - A URI or CURIE that represents an object in the model. String ( str ) - A character string Time ( XSDTime ) - A time object represents a (local) time of day, independent of any particular day Uri ( URI ) - a complete URI Uriorcurie ( URIorCURIE ) - a URI or a CURIE","title":"Index"},{"location":"#meta-schema","text":"A metamodel for defining linked open data schemas","title":"meta schema"},{"location":"#classes","text":"AltDescription - an attributed description Element - a named element in the model Definition - base class for definitions ClassDefinition - the definition of a class or interface SlotDefinition - the definition of a property or a slot EnumDefinition - List of values that constrain the range of a slot SchemaDefinition - a collection of subset, type, slot and class definitions SubsetDefinition - the name and description of a subset TypeDefinition - A data type definition. 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If present, this is used instead of the actual slot name. aliases alt_description\u279esource - the source of an attributed description alt_description\u279edescription - text of an attributed description alt_descriptions apply_to - Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. class_definition\u279eapply_to slot_definition\u279eapply_to attributes - Inline definition of slots base - python base type that implements this type definition class_uri - URI of the class in an RDF environment classes - class definitions code_set - the identifier of an enumeration code set. code_set_tag - the version tag of the enumeration code set code_set_version - the version identifier of the enumeration code set comments - notes and comments about an element intended for external consumption created_by - agent that created the element created_on - time at which the element was created default_curi_maps - ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables default_prefix - default and base prefix -- used for ':' identifiers, @base and @vocab default_range - default slot range to be used if range element is omitted from a slot definition defining_slots - The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom definition_uri - the \"native\" URI of the element deprecated - Description of why and when this element will no longer be used deprecated element has exact replacement - When an element is deprecated, it can be automatically replaced by this uri or curie deprecated element has possible replacement - When an element is deprecated, it can be potentially replaced by this uri or curie description - a description of the element's purpose and use designates_type - True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition domain - defines the type of the subject of the slot. Given the following slot definition domain_of - the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context emit_prefixes - a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. enums - enumerated ranges examples - example usages of an element extension\u279etag - a tag associated with an extension extension\u279evalue - the actual annotation extensions - a tag/text tuple attached to an arbitrary element annotations - a collection of tag/text tuples with the semantics of OWL Annotation from_schema - id of the schema that defined the element generation_date - date and time that the schema was loaded/generated id - The official schema URI id_prefixes - the identifier of this class or slot must begin with the URIs referenced by this prefix identifier - True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container ifabsent - function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: imported_from - the imports entry that this element was derived from. Empty means primary source imports - other schemas that are included in this schema in_subset - used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) inherited - true means that the value of a slot is inherited by subclasses inlined - True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. inlined_as_list - True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. inverse - indicates that any instance of d s r implies that there is also an instance of r s' d is_a - specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded class_definition\u279eis_a permissible_value\u279eis_a slot_definition\u279eis_a is_class_field - indicates that any instance, i, the domain of this slot will include an assert of i s range is_usage_slot - True means that this slot was defined in a slot_usage situation key - True means that the key slot(s) uniquely identify the container. last_updated_on - time at which the element was last updated license - license for the schema local_name_source - the ncname of the source of the name local_name_value - a name assigned to an element in a given ontology local_names mappings - A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. broad mappings - A list of terms from different schemas or terminology systems that have broader meaning. close mappings - A list of terms from different schemas or terminology systems that have close meaning. exact mappings - A list of terms from different schemas or terminology systems that have identical meaning. narrow mappings - A list of terms from different schemas or terminology systems that have narrower meaning. related mappings - A list of terms from different schemas or terminology systems that have related meaning. maximum_value - for slots with ranges of type number, the value must be equal to or lowe than this meaning - the value meaning (in the 11179 sense) of a permissible value metamodel_version - Version of the metamodel used to load the schema minimum_value - for slots with ranges of type number, the value must be equal to or higher than this mixin - this slot or class can only be used as a mixin. mixins - List of definitions to be mixed in. Targets may be any definition of the same type class_definition\u279emixins permissible_value\u279emixins slot_definition\u279emixins modified_by - agent that modified the element multivalued - true means that slot can have more than one value name - the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. schema_definition\u279ename notes - editorial notes about an element intended for internal consumption owner - the \"owner\" of the slot. 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Text explains why recommended - true means that the slot should be present in the loaded definition, but this is not required repr - the name of the python object that implements this type definition required - true means that the slot must be present in the loaded definition role - the role played by the slot range see_also - a reference singular_name - a name that is used in the singular form schema_definition\u279eslots - slot definitions slot_uri - predicate of this slot for semantic web application slot_usage - the redefinition of a slot in the context of the containing class definition. slots - list of slot names that are applicable to a class source_file - name, uri or description of the source of the schema source_file_date - modification date of the source of the schema source_file_size - size in bytes of the source of the schema status - status of the element string_serialization - Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. 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Objectidentifier ( ElementIdentifier ) - A URI or CURIE that represents an object in the model. 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a tag/value pair with the semantics of OWL Annotation Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI UniqueKey (mixin) - a collection of slots whose values uniquely identify an instance of a class Referenced by class Attributes Own annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Class: annotatable"},{"location":"Annotatable/#class-annotatable","text":"mixin for classes that support annotations URI: linkml:Annotatable","title":"Class: annotatable"},{"location":"Annotatable/#mixin-for","text":"Annotation (mixin) - a tag/value pair with the semantics of OWL Annotation Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI UniqueKey (mixin) - a collection of slots whose values uniquely identify an instance of a class","title":"Mixin for"},{"location":"Annotatable/#referenced-by-class","text":"","title":"Referenced by class"},{"location":"Annotatable/#attributes","text":"","title":"Attributes"},{"location":"Annotatable/#own","text":"annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Own"},{"location":"Annotation/","text":"Class: annotation a tag/value pair with the semantics of OWL Annotation URI: linkml:Annotation Parents is_a: Extension - a tag/value pair used to add non-model information to an entry Uses Mixins mixin: Annotatable - mixin for classes that support annotations Referenced by class Annotatable annotations 0..* Annotation Attributes Own annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation Inherited from extension: extension\u279etag 1..1 Description: a tag associated with an extension Range: Uriorcurie extension\u279evalue 1..1 Description: the actual annotation Range: String extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Class: annotation"},{"location":"Annotation/#class-annotation","text":"a tag/value pair with the semantics of OWL Annotation URI: linkml:Annotation","title":"Class: annotation"},{"location":"Annotation/#parents","text":"is_a: Extension - a tag/value pair used to add non-model information to an entry","title":"Parents"},{"location":"Annotation/#uses-mixins","text":"mixin: Annotatable - mixin for classes that support annotations","title":"Uses Mixins"},{"location":"Annotation/#referenced-by-class","text":"Annotatable annotations 0..* Annotation","title":"Referenced by class"},{"location":"Annotation/#attributes","text":"","title":"Attributes"},{"location":"Annotation/#own","text":"annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Own"},{"location":"Annotation/#inherited-from-extension","text":"extension\u279etag 1..1 Description: a tag associated with an extension Range: Uriorcurie extension\u279evalue 1..1 Description: the actual annotation Range: String extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Inherited from extension:"},{"location":"Boolean/","text":"Type: boolean A binary (true or false) value URI: linkml:Boolean Root (builtin) type Bool Representation bool","title":"Type: boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: linkml:Boolean Root (builtin) type Bool Representation bool","title":"Type: boolean"},{"location":"ClassDefinition/","text":"Class: class_definition the definition of a class or interface URI: linkml:ClassDefinition Parents is_a: Definition - base class for definitions Referenced by class ClassDefinition class_definition\u279eapply_to 0..* ClassDefinition ClassDefinition class_definition\u279eis_a 0..1 ClassDefinition ClassDefinition class_definition\u279emixins 0..* ClassDefinition SchemaDefinition classes 0..* ClassDefinition SlotDefinition domain 0..1 ClassDefinition SlotDefinition domain_of 0..* ClassDefinition ClassDefinition union_of 0..* ClassDefinition Attributes Own slots 0..* Description: list of slot names that are applicable to a class Range: SlotDefinition slot_usage 0..* Description: the redefinition of a slot in the context of the containing class definition. Range: SlotDefinition attributes 0..* Description: Inline definition of slots Range: SlotDefinition class_uri 0..1 Description: URI of the class in an RDF environment Range: Uriorcurie subclass_of 0..1 Description: rdfs:subClassOf to be emitted in OWL generation Range: Uriorcurie union_of 0..* Description: indicates that the domain class consists exactly of the members of the classes in the range Range: ClassDefinition defining_slots 0..* Description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom Range: SlotDefinition tree_root 0..1 Description: indicator that this is the root class in tree structures Range: Boolean class_definition\u279eis_a 0..1 Range: ClassDefinition class_definition\u279emixins 0..* Range: ClassDefinition class_definition\u279eapply_to 0..* Range: ClassDefinition Inherited from definition: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String Other properties Aliases: table record template message observation Close Mappings: owl:Class","title":"Class: class_definition"},{"location":"ClassDefinition/#class-class_definition","text":"the definition of a class or interface URI: linkml:ClassDefinition","title":"Class: class_definition"},{"location":"ClassDefinition/#parents","text":"is_a: Definition - base class for definitions","title":"Parents"},{"location":"ClassDefinition/#referenced-by-class","text":"ClassDefinition class_definition\u279eapply_to 0..* ClassDefinition ClassDefinition class_definition\u279eis_a 0..1 ClassDefinition ClassDefinition class_definition\u279emixins 0..* ClassDefinition SchemaDefinition classes 0..* ClassDefinition SlotDefinition domain 0..1 ClassDefinition SlotDefinition domain_of 0..* ClassDefinition ClassDefinition union_of 0..* ClassDefinition","title":"Referenced by class"},{"location":"ClassDefinition/#attributes","text":"","title":"Attributes"},{"location":"ClassDefinition/#own","text":"slots 0..* Description: list of slot names that are applicable to a class Range: SlotDefinition slot_usage 0..* Description: the redefinition of a slot in the context of the containing class definition. Range: SlotDefinition attributes 0..* Description: Inline definition of slots Range: SlotDefinition class_uri 0..1 Description: URI of the class in an RDF environment Range: Uriorcurie subclass_of 0..1 Description: rdfs:subClassOf to be emitted in OWL generation Range: Uriorcurie union_of 0..* Description: indicates that the domain class consists exactly of the members of the classes in the range Range: ClassDefinition defining_slots 0..* Description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom Range: SlotDefinition tree_root 0..1 Description: indicator that this is the root class in tree structures Range: Boolean class_definition\u279eis_a 0..1 Range: ClassDefinition class_definition\u279emixins 0..* Range: ClassDefinition class_definition\u279eapply_to 0..* Range: ClassDefinition","title":"Own"},{"location":"ClassDefinition/#inherited-from-definition","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String","title":"Inherited from definition:"},{"location":"ClassDefinition/#other-properties","text":"Aliases: table record template message observation Close Mappings: owl:Class","title":"Other properties"},{"location":"CommonMetadata/","text":"Class: common_metadata Generic metadata shared across definitions URI: linkml:CommonMetadata Mixin for Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI Referenced by class Attributes Own description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) alt_descriptions 0..* Range: AltDescription deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String todos 0..* Description: Outstanding issue that needs resolution Range: String notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl) comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl) examples 0..* Description: example usages of an element Range: Example in subsets: (owl) in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition from_schema 0..1 Description: id of the schema that defined the element Range: Uri imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl) deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie","title":"Class: common_metadata"},{"location":"CommonMetadata/#class-common_metadata","text":"Generic metadata shared across definitions URI: linkml:CommonMetadata","title":"Class: common_metadata"},{"location":"CommonMetadata/#mixin-for","text":"Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI","title":"Mixin for"},{"location":"CommonMetadata/#referenced-by-class","text":"","title":"Referenced by class"},{"location":"CommonMetadata/#attributes","text":"","title":"Attributes"},{"location":"CommonMetadata/#own","text":"description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) alt_descriptions 0..* Range: AltDescription deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String todos 0..* Description: Outstanding issue that needs resolution Range: String notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl) comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl) examples 0..* Description: example usages of an element Range: Example in subsets: (owl) in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition from_schema 0..1 Description: id of the schema that defined the element Range: Uri imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl) deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie","title":"Own"},{"location":"Date/","text":"Type: date a date (year, month and day) in an idealized calendar URI: linkml:Date Root (builtin) type XSDDate Representation str","title":"Type: date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: linkml:Date Root (builtin) type XSDDate Representation str","title":"Type: date"},{"location":"Datetime/","text":"Type: datetime The combination of a date and time URI: linkml:Datetime Root (builtin) type XSDDateTime Representation str","title":"Type: datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: linkml:Datetime Root (builtin) type XSDDateTime Representation str","title":"Type: datetime"},{"location":"Decimal/","text":"Type: decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: linkml:Decimal Root (builtin) type Decimal","title":"Type: decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: linkml:Decimal Root (builtin) type Decimal","title":"Type: decimal"},{"location":"Definition/","text":"Class: definition base class for definitions URI: linkml:Definition Parents is_a: Element - a named element in the model Children ClassDefinition - the definition of a class or interface SlotDefinition - the definition of a property or a slot Referenced by class Definition apply_to 0..* Definition Definition is_a 0..1 Definition Definition mixins 0..* Definition SlotDefinition owner 0..1 Definition Attributes Own is_a 0..1 Description: specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded Range: Definition abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean mixins 0..* Description: List of definitions to be mixed in. Targets may be any definition of the same type Range: Definition apply_to 0..* Description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. Range: Definition values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String Inherited from element: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie Other properties See also: https://en.wikipedia.org/wiki/Data_element_definition","title":"Class: definition"},{"location":"Definition/#class-definition","text":"base class for definitions URI: linkml:Definition","title":"Class: definition"},{"location":"Definition/#parents","text":"is_a: Element - a named element in the model","title":"Parents"},{"location":"Definition/#children","text":"ClassDefinition - the definition of a class or interface SlotDefinition - the definition of a property or a slot","title":"Children"},{"location":"Definition/#referenced-by-class","text":"Definition apply_to 0..* Definition Definition is_a 0..1 Definition Definition mixins 0..* Definition SlotDefinition owner 0..1 Definition","title":"Referenced by class"},{"location":"Definition/#attributes","text":"","title":"Attributes"},{"location":"Definition/#own","text":"is_a 0..1 Description: specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded Range: Definition abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean mixins 0..* Description: List of definitions to be mixed in. Targets may be any definition of the same type Range: Definition apply_to 0..* Description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. Range: Definition values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String","title":"Own"},{"location":"Definition/#inherited-from-element","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"Definition/#other-properties","text":"See also: https://en.wikipedia.org/wiki/Data_element_definition","title":"Other properties"},{"location":"Double/","text":"Type: double A real number that conforms to the xsd:double specification URI: linkml:Double Root (builtin) type float","title":"Type: double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: linkml:Double Root (builtin) type float","title":"Type: double"},{"location":"Element/","text":"Class: element a named element in the model URI: linkml:Element Uses Mixins mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations mixin: CommonMetadata - Generic metadata shared across definitions Children Definition - base class for definitions EnumDefinition - List of values that constrain the range of a slot SchemaDefinition - a collection of subset, type, slot and class definitions SubsetDefinition - the name and description of a subset TypeDefinition - A data type definition. Referenced by class SlotDefinition range 0..1 Element Attributes Own name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie Mixed in from extensible: extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension Mixed in from annotatable: annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation Mixed in from common_metadata: description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) Mixed in from common_metadata: alt_descriptions 0..* Range: AltDescription Mixed in from common_metadata: deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String Mixed in from common_metadata: todos 0..* Description: Outstanding issue that needs resolution Range: String Mixed in from common_metadata: notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl) Mixed in from common_metadata: comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl) Mixed in from common_metadata: examples 0..* Description: example usages of an element Range: Example in subsets: (owl) Mixed in from common_metadata: in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition Mixed in from common_metadata: from_schema 0..1 Description: id of the schema that defined the element Range: Uri Mixed in from common_metadata: imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String Mixed in from common_metadata: see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl) Mixed in from common_metadata: deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie Mixed in from common_metadata: deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie Other properties See also: https://en.wikipedia.org/wiki/Data_element","title":"Class: element"},{"location":"Element/#class-element","text":"a named element in the model URI: linkml:Element","title":"Class: element"},{"location":"Element/#uses-mixins","text":"mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations mixin: CommonMetadata - Generic metadata shared across definitions","title":"Uses Mixins"},{"location":"Element/#children","text":"Definition - base class for definitions EnumDefinition - List of values that constrain the range of a slot SchemaDefinition - a collection of subset, type, slot and class definitions SubsetDefinition - the name and description of a subset TypeDefinition - A data type definition.","title":"Children"},{"location":"Element/#referenced-by-class","text":"SlotDefinition range 0..1 Element","title":"Referenced by class"},{"location":"Element/#attributes","text":"","title":"Attributes"},{"location":"Element/#own","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Own"},{"location":"Element/#mixed-in-from-extensible","text":"extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Mixed in from extensible:"},{"location":"Element/#mixed-in-from-annotatable","text":"annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Mixed in from annotatable:"},{"location":"Element/#mixed-in-from-common_metadata","text":"description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_1","text":"alt_descriptions 0..* Range: AltDescription","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_2","text":"deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_3","text":"todos 0..* Description: Outstanding issue that needs resolution Range: String","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_4","text":"notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_5","text":"comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_6","text":"examples 0..* Description: example usages of an element Range: Example in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_7","text":"in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_8","text":"from_schema 0..1 Description: id of the schema that defined the element Range: Uri","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_9","text":"imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_10","text":"see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_11","text":"deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie","title":"Mixed in from common_metadata:"},{"location":"Element/#mixed-in-from-common_metadata_12","text":"deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie","title":"Mixed in from common_metadata:"},{"location":"Element/#other-properties","text":"See also: https://en.wikipedia.org/wiki/Data_element","title":"Other properties"},{"location":"EnumDefinition/","text":"Class: enum_definition List of values that constrain the range of a slot URI: linkml:EnumDefinition Parents is_a: Element - a named element in the model Referenced by class SchemaDefinition enums 0..* EnumDefinition Attributes Own code_set 0..1 Description: the identifier of an enumeration code set. Range: Uriorcurie code_set_tag 0..1 Description: the version tag of the enumeration code set Range: String code_set_version 0..1 Description: the version identifier of the enumeration code set Range: String pv_formula 0..1 Description: Defines the specific formula to be used to generate the permissible values. Range: pv_formula_options permissible_values 0..* Description: A list of possible values for a slot range Range: PermissibleValue Inherited from element: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. 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Range: pv_formula_options permissible_values 0..* Description: A list of possible values for a slot range Range: PermissibleValue","title":"Own"},{"location":"EnumDefinition/#inherited-from-element","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. 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Range: Uriorcurie","title":"Inherited from element:"},{"location":"Example/","text":"Class: example usage example and description URI: linkml:Example Referenced by class Element examples 0..* Example Attributes Own value 0..1 Description: example value Range: String example\u279edescription 0..1 Description: description of what the value is doing Range: String","title":"Class: example"},{"location":"Example/#class-example","text":"usage example and description URI: linkml:Example","title":"Class: example"},{"location":"Example/#referenced-by-class","text":"Element examples 0..* Example","title":"Referenced by class"},{"location":"Example/#attributes","text":"","title":"Attributes"},{"location":"Example/#own","text":"value 0..1 Description: example value Range: String example\u279edescription 0..1 Description: description of what the value is doing Range: String","title":"Own"},{"location":"Extensible/","text":"Class: extensible mixin for classes that support extension URI: linkml:Extensible Mixin for Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI UniqueKey (mixin) - a collection of slots whose values uniquely identify an instance of a class Referenced by class Attributes Own extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Class: extensible"},{"location":"Extensible/#class-extensible","text":"mixin for classes that support extension URI: linkml:Extensible","title":"Class: extensible"},{"location":"Extensible/#mixin-for","text":"Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI UniqueKey (mixin) - a collection of slots whose values uniquely identify an instance of a class","title":"Mixin for"},{"location":"Extensible/#referenced-by-class","text":"","title":"Referenced by class"},{"location":"Extensible/#attributes","text":"","title":"Attributes"},{"location":"Extensible/#own","text":"extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Own"},{"location":"Extension/","text":"Class: extension a tag/value pair used to add non-model information to an entry URI: linkml:Extension Children Annotation - a tag/value pair with the semantics of OWL Annotation Referenced by class Extensible extensions 0..* Extension Attributes Own extension\u279etag 1..1 Description: a tag associated with an extension Range: Uriorcurie extension\u279evalue 1..1 Description: the actual annotation Range: String extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Class: extension"},{"location":"Extension/#class-extension","text":"a tag/value pair used to add non-model information to an entry URI: linkml:Extension","title":"Class: extension"},{"location":"Extension/#children","text":"Annotation - a tag/value pair with the semantics of OWL Annotation","title":"Children"},{"location":"Extension/#referenced-by-class","text":"Extensible extensions 0..* Extension","title":"Referenced by class"},{"location":"Extension/#attributes","text":"","title":"Attributes"},{"location":"Extension/#own","text":"extension\u279etag 1..1 Description: a tag associated with an extension Range: Uriorcurie extension\u279evalue 1..1 Description: the actual annotation Range: String extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Own"},{"location":"Float/","text":"Type: float A real number that conforms to the xsd:float specification URI: linkml:Float Root (builtin) type float","title":"Type: float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: linkml:Float Root (builtin) type float","title":"Type: float"},{"location":"Integer/","text":"Type: integer An integer URI: linkml:Integer Root (builtin) type int","title":"Type: integer"},{"location":"Integer/#type-integer","text":"An integer URI: linkml:Integer Root (builtin) type int","title":"Type: integer"},{"location":"LocalName/","text":"Class: local_name an attributed label URI: linkml:LocalName Referenced by class Element local_names 0..* LocalName Attributes Own local_name_source 1..1 Description: the ncname of the source of the name Range: Ncname local_name_value 1..1 Description: a name assigned to an element in a given ontology Range: String","title":"Class: local_name"},{"location":"LocalName/#class-local_name","text":"an attributed label URI: linkml:LocalName","title":"Class: local_name"},{"location":"LocalName/#referenced-by-class","text":"Element local_names 0..* LocalName","title":"Referenced by class"},{"location":"LocalName/#attributes","text":"","title":"Attributes"},{"location":"LocalName/#own","text":"local_name_source 1..1 Description: the ncname of the source of the name Range: Ncname local_name_value 1..1 Description: a name assigned to an element in a given ontology Range: String","title":"Own"},{"location":"Ncname/","text":"Type: ncname Prefix part of CURIE URI: linkml:Ncname Root (builtin) type NCName Representation str","title":"Type: ncname"},{"location":"Ncname/#type-ncname","text":"Prefix part of CURIE URI: linkml:Ncname Root (builtin) type NCName Representation str","title":"Type: ncname"},{"location":"Nodeidentifier/","text":"Type: nodeidentifier A URI, CURIE or BNODE that represents a node in a model. URI: linkml:Nodeidentifier Root (builtin) type NodeIdentifier Representation str","title":"Type: nodeidentifier"},{"location":"Nodeidentifier/#type-nodeidentifier","text":"A URI, CURIE or BNODE that represents a node in a model. URI: linkml:Nodeidentifier Root (builtin) type NodeIdentifier Representation str","title":"Type: nodeidentifier"},{"location":"Objectidentifier/","text":"Type: objectidentifier A URI or CURIE that represents an object in the model. URI: linkml:Objectidentifier Root (builtin) type ElementIdentifier Representation str Other properties Comments: Used for inheritence and type checking","title":"Type: objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: linkml:Objectidentifier Root (builtin) type ElementIdentifier Representation str","title":"Type: objectidentifier"},{"location":"Objectidentifier/#other-properties","text":"Comments: Used for inheritence and type checking","title":"Other properties"},{"location":"Owl/","text":"Subset: owl Set of slots that appear in the OWL representation of a model URI: linkml:owl Classes Mixins Slots comments - notes and comments about an element intended for external consumption description - a description of the element's purpose and use examples - example usages of an element generation_date - date and time that the schema was loaded/generated license - license for the schema metamodel_version - Version of the metamodel used to load the schema name - the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. notes - editorial notes about an element intended for internal consumption see_also - a reference source_file - name, uri or description of the source of the schema source_file_date - modification date of the source of the schema source_file_size - size in bytes of the source of the schema title - the official title of the schema version - particular version of schema Types Enums","title":"Subset: owl"},{"location":"Owl/#subset-owl","text":"Set of slots that appear in the OWL representation of a model URI: linkml:owl","title":"Subset: owl"},{"location":"Owl/#classes","text":"","title":"Classes"},{"location":"Owl/#mixins","text":"","title":"Mixins"},{"location":"Owl/#slots","text":"comments - notes and comments about an element intended for external consumption description - a description of the element's purpose and use examples - example usages of an element generation_date - date and time that the schema was loaded/generated license - license for the schema metamodel_version - Version of the metamodel used to load the schema name - the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. notes - editorial notes about an element intended for internal consumption see_also - a reference source_file - name, uri or description of the source of the schema source_file_date - modification date of the source of the schema source_file_size - size in bytes of the source of the schema title - the official title of the schema version - particular version of schema","title":"Slots"},{"location":"Owl/#types","text":"","title":"Types"},{"location":"Owl/#enums","text":"","title":"Enums"},{"location":"PermissibleValue/","text":"Class: permissible_value a permissible value, accompanied by intended text and an optional mapping to a concept URI URI: linkml:PermissibleValue Uses Mixins mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations mixin: CommonMetadata - Generic metadata shared across definitions Referenced by class PermissibleValue permissible_value\u279eis_a 0..1 PermissibleValue PermissibleValue permissible_value\u279emixins 0..* PermissibleValue EnumDefinition permissible_values 0..* PermissibleValue Attributes Own text 1..1 Range: String description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) meaning 0..1 Description: the value meaning (in the 11179 sense) of a permissible value Range: Uriorcurie permissible_value\u279eis_a 0..1 Range: PermissibleValue permissible_value\u279emixins 0..* Range: PermissibleValue Mixed in from extensible: extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension Mixed in from annotatable: annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation Mixed in from common_metadata: alt_descriptions 0..* Range: AltDescription Mixed in from common_metadata: deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String Mixed in from common_metadata: todos 0..* Description: Outstanding issue that needs resolution Range: String Mixed in from common_metadata: notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl) Mixed in from common_metadata: comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl) Mixed in from common_metadata: examples 0..* Description: example usages of an element Range: Example in subsets: (owl) Mixed in from common_metadata: in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition Mixed in from common_metadata: from_schema 0..1 Description: id of the schema that defined the element Range: Uri Mixed in from common_metadata: imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String Mixed in from common_metadata: see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl) Mixed in from common_metadata: deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie Mixed in from common_metadata: deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie","title":"Class: permissible_value"},{"location":"PermissibleValue/#class-permissible_value","text":"a permissible value, accompanied by intended text and an optional mapping to a concept URI URI: linkml:PermissibleValue","title":"Class: permissible_value"},{"location":"PermissibleValue/#uses-mixins","text":"mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations mixin: CommonMetadata - Generic metadata shared across definitions","title":"Uses Mixins"},{"location":"PermissibleValue/#referenced-by-class","text":"PermissibleValue permissible_value\u279eis_a 0..1 PermissibleValue PermissibleValue permissible_value\u279emixins 0..* PermissibleValue EnumDefinition permissible_values 0..* PermissibleValue","title":"Referenced by class"},{"location":"PermissibleValue/#attributes","text":"","title":"Attributes"},{"location":"PermissibleValue/#own","text":"text 1..1 Range: String description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) meaning 0..1 Description: the value meaning (in the 11179 sense) of a permissible value Range: Uriorcurie permissible_value\u279eis_a 0..1 Range: PermissibleValue permissible_value\u279emixins 0..* Range: PermissibleValue","title":"Own"},{"location":"PermissibleValue/#mixed-in-from-extensible","text":"extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Mixed in from extensible:"},{"location":"PermissibleValue/#mixed-in-from-annotatable","text":"annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Mixed in from annotatable:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata","text":"alt_descriptions 0..* Range: AltDescription","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_1","text":"deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_2","text":"todos 0..* Description: Outstanding issue that needs resolution Range: String","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_3","text":"notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_4","text":"comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_5","text":"examples 0..* Description: example usages of an element Range: Example in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_6","text":"in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_7","text":"from_schema 0..1 Description: id of the schema that defined the element Range: Uri","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_8","text":"imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_9","text":"see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl)","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_10","text":"deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie","title":"Mixed in from common_metadata:"},{"location":"PermissibleValue/#mixed-in-from-common_metadata_11","text":"deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie","title":"Mixed in from common_metadata:"},{"location":"Prefix/","text":"Class: prefix prefix URI tuple URI: linkml:Prefix Referenced by class SchemaDefinition prefixes 0..* Prefix Attributes Own prefix_prefix 1..1 Description: the nsname (sans ':' for a given prefix) Range: Ncname prefix_reference 1..1 Description: A URI associated with a given prefix Range: Uri","title":"Class: prefix"},{"location":"Prefix/#class-prefix","text":"prefix URI tuple URI: linkml:Prefix","title":"Class: prefix"},{"location":"Prefix/#referenced-by-class","text":"SchemaDefinition prefixes 0..* Prefix","title":"Referenced by class"},{"location":"Prefix/#attributes","text":"","title":"Attributes"},{"location":"Prefix/#own","text":"prefix_prefix 1..1 Description: the nsname (sans ':' for a given prefix) Range: Ncname prefix_reference 1..1 Description: A URI associated with a given prefix Range: Uri","title":"Own"},{"location":"SchemaDefinition/","text":"Class: schema_definition a collection of subset, type, slot and class definitions URI: linkml:SchemaDefinition Parents is_a: Element - a named element in the model Referenced by class Attributes Own id 1..1 Description: The official schema URI Range: Uri title 0..1 Description: the official title of the schema Range: String in subsets: (owl) version 0..1 Description: particular version of schema Range: String in subsets: (owl) imports 0..* Description: other schemas that are included in this schema Range: Uriorcurie license 0..1 Description: license for the schema Range: String in subsets: (owl) prefixes 0..* Description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes Range: Prefix emit_prefixes 0..* Description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. Range: Ncname default_curi_maps 0..* Description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables Range: String default_prefix 0..1 Description: default and base prefix -- used for ':' identifiers, @base and @vocab Range: String default_range 0..1 Description: default slot range to be used if range element is omitted from a slot definition Range: TypeDefinition subsets 0..* Description: list of subsets referenced in this model Range: SubsetDefinition types 0..* Description: data types used in the model Range: TypeDefinition enums 0..* Description: enumerated ranges Range: EnumDefinition schema_definition\u279eslots 0..* Description: slot definitions Range: SlotDefinition classes 0..* Description: class definitions Range: ClassDefinition metamodel_version 0..1 Description: Version of the metamodel used to load the schema Range: String in subsets: (owl) source_file 0..1 Description: name, uri or description of the source of the schema Range: String in subsets: (owl) source_file_date 0..1 Description: modification date of the source of the schema Range: Datetime in subsets: (owl) source_file_size 0..1 Description: size in bytes of the source of the schema Range: Integer in subsets: (owl) generation_date 0..1 Description: date and time that the schema was loaded/generated Range: Datetime in subsets: (owl) schema_definition\u279ename 1..1 Range: Ncname Inherited from element: id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie Other properties Aliases: data dictionary See also: https://en.wikipedia.org/wiki/Data_dictionary","title":"Class: schema_definition"},{"location":"SchemaDefinition/#class-schema_definition","text":"a collection of subset, type, slot and class definitions URI: linkml:SchemaDefinition","title":"Class: schema_definition"},{"location":"SchemaDefinition/#parents","text":"is_a: Element - a named element in the model","title":"Parents"},{"location":"SchemaDefinition/#referenced-by-class","text":"","title":"Referenced by class"},{"location":"SchemaDefinition/#attributes","text":"","title":"Attributes"},{"location":"SchemaDefinition/#own","text":"id 1..1 Description: The official schema URI Range: Uri title 0..1 Description: the official title of the schema Range: String in subsets: (owl) version 0..1 Description: particular version of schema Range: String in subsets: (owl) imports 0..* Description: other schemas that are included in this schema Range: Uriorcurie license 0..1 Description: license for the schema Range: String in subsets: (owl) prefixes 0..* Description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes Range: Prefix emit_prefixes 0..* Description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. Range: Ncname default_curi_maps 0..* Description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables Range: String default_prefix 0..1 Description: default and base prefix -- used for ':' identifiers, @base and @vocab Range: String default_range 0..1 Description: default slot range to be used if range element is omitted from a slot definition Range: TypeDefinition subsets 0..* Description: list of subsets referenced in this model Range: SubsetDefinition types 0..* Description: data types used in the model Range: TypeDefinition enums 0..* Description: enumerated ranges Range: EnumDefinition schema_definition\u279eslots 0..* Description: slot definitions Range: SlotDefinition classes 0..* Description: class definitions Range: ClassDefinition metamodel_version 0..1 Description: Version of the metamodel used to load the schema Range: String in subsets: (owl) source_file 0..1 Description: name, uri or description of the source of the schema Range: String in subsets: (owl) source_file_date 0..1 Description: modification date of the source of the schema Range: Datetime in subsets: (owl) source_file_size 0..1 Description: size in bytes of the source of the schema Range: Integer in subsets: (owl) generation_date 0..1 Description: date and time that the schema was loaded/generated Range: Datetime in subsets: (owl) schema_definition\u279ename 1..1 Range: Ncname","title":"Own"},{"location":"SchemaDefinition/#inherited-from-element","text":"id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"SchemaDefinition/#other-properties","text":"Aliases: data dictionary See also: https://en.wikipedia.org/wiki/Data_dictionary","title":"Other properties"},{"location":"SlotDefinition/","text":"Class: slot_definition the definition of a property or a slot URI: linkml:SlotDefinition Parents is_a: Definition - base class for definitions Referenced by class ClassDefinition attributes 0..* SlotDefinition ClassDefinition defining_slots 0..* SlotDefinition SlotDefinition inverse 0..1 SlotDefinition SlotDefinition slot_definition\u279eapply_to 0..* SlotDefinition SlotDefinition slot_definition\u279eis_a 0..1 SlotDefinition SlotDefinition slot_definition\u279emixins 0..* SlotDefinition SchemaDefinition schema_definition\u279eslots 0..* SlotDefinition ClassDefinition slot_usage 0..* SlotDefinition ClassDefinition slots 0..* SlotDefinition SlotDefinition subproperty_of 0..1 SlotDefinition UniqueKey unique_key_slots 1..* SlotDefinition Attributes Own singular_name 0..1 Description: a name that is used in the singular form Range: String domain 0..1 Description: defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 * Range: [ClassDefinition](ClassDefinition.md) range 0..1 Description: defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 * Range: [Element](Element.md) slot_uri 0..1 Description: predicate of this slot for semantic web application Range: Uriorcurie multivalued 0..1 Description: true means that slot can have more than one value Range: Boolean inherited 0..1 Description: true means that the value of a slot is inherited by subclasses Range: Boolean readonly 0..1 Description: If present, slot is read only. Text explains why Range: String ifabsent 0..1 Description: function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: [Tt]rue -- boolean True [Ff]alse -- boolean False int(value) -- integer value str(value) -- string value default_range -- schema default range bnode -- blank node identifier slot_uri -- URI for the slot class_curie -- CURIE for the containing class class_uri -- URI for the containing class Range: String required 0..1 Description: true means that the slot must be present in the loaded definition Range: Boolean recommended 0..1 Description: true means that the slot should be present in the loaded definition, but this is not required Range: Boolean inlined 0..1 Description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. Range: Boolean inlined_as_list 0..1 Description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. Range: Boolean key 0..1 Description: True means that the key slot(s) uniquely identify the container. Range: Boolean identifier 0..1 Description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container Range: Boolean designates_type 0..1 Description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition Range: Boolean alias 0..1 Description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. Range: String owner 0..1 Description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot Range: Definition domain_of 0..* Description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context Range: ClassDefinition subproperty_of 0..1 Description: Ontology property which this slot is a subproperty of Range: SlotDefinition symmetric 0..1 Description: True means that any instance of d s r implies that there is also an instance of r s d Range: Boolean inverse 0..1 Description: indicates that any instance of d s r implies that there is also an instance of r s' d Range: SlotDefinition is_class_field 0..1 Description: indicates that any instance, i, the domain of this slot will include an assert of i s range Range: Boolean role 0..1 Description: the role played by the slot range Range: String is_usage_slot 0..1 Description: True means that this slot was defined in a slot_usage situation Range: Boolean usage_slot_name 0..1 Description: The name of the slot referenced in the slot_usage Range: String minimum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or higher than this Range: Integer maximum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or lowe than this Range: Integer pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String slot_definition\u279eis_a 0..1 Range: SlotDefinition slot_definition\u279emixins 0..* Range: SlotDefinition slot_definition\u279eapply_to 0..* Range: SlotDefinition Inherited from definition: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String Other properties Aliases: slot field property attribute column variable Close Mappings: rdf:Property","title":"Class: slot_definition"},{"location":"SlotDefinition/#class-slot_definition","text":"the definition of a property or a slot URI: linkml:SlotDefinition","title":"Class: slot_definition"},{"location":"SlotDefinition/#parents","text":"is_a: Definition - base class for definitions","title":"Parents"},{"location":"SlotDefinition/#referenced-by-class","text":"ClassDefinition attributes 0..* SlotDefinition ClassDefinition defining_slots 0..* SlotDefinition SlotDefinition inverse 0..1 SlotDefinition SlotDefinition slot_definition\u279eapply_to 0..* SlotDefinition SlotDefinition slot_definition\u279eis_a 0..1 SlotDefinition SlotDefinition slot_definition\u279emixins 0..* SlotDefinition SchemaDefinition schema_definition\u279eslots 0..* SlotDefinition ClassDefinition slot_usage 0..* SlotDefinition ClassDefinition slots 0..* SlotDefinition SlotDefinition subproperty_of 0..1 SlotDefinition UniqueKey unique_key_slots 1..* SlotDefinition","title":"Referenced by class"},{"location":"SlotDefinition/#attributes","text":"","title":"Attributes"},{"location":"SlotDefinition/#own","text":"singular_name 0..1 Description: a name that is used in the singular form Range: String domain 0..1 Description: defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 * Range: [ClassDefinition](ClassDefinition.md) range 0..1 Description: defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 * Range: [Element](Element.md) slot_uri 0..1 Description: predicate of this slot for semantic web application Range: Uriorcurie multivalued 0..1 Description: true means that slot can have more than one value Range: Boolean inherited 0..1 Description: true means that the value of a slot is inherited by subclasses Range: Boolean readonly 0..1 Description: If present, slot is read only. Text explains why Range: String ifabsent 0..1 Description: function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: [Tt]rue -- boolean True [Ff]alse -- boolean False int(value) -- integer value str(value) -- string value default_range -- schema default range bnode -- blank node identifier slot_uri -- URI for the slot class_curie -- CURIE for the containing class class_uri -- URI for the containing class Range: String required 0..1 Description: true means that the slot must be present in the loaded definition Range: Boolean recommended 0..1 Description: true means that the slot should be present in the loaded definition, but this is not required Range: Boolean inlined 0..1 Description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. Range: Boolean inlined_as_list 0..1 Description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. Range: Boolean key 0..1 Description: True means that the key slot(s) uniquely identify the container. Range: Boolean identifier 0..1 Description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container Range: Boolean designates_type 0..1 Description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition Range: Boolean alias 0..1 Description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. Range: String owner 0..1 Description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot Range: Definition domain_of 0..* Description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context Range: ClassDefinition subproperty_of 0..1 Description: Ontology property which this slot is a subproperty of Range: SlotDefinition symmetric 0..1 Description: True means that any instance of d s r implies that there is also an instance of r s d Range: Boolean inverse 0..1 Description: indicates that any instance of d s r implies that there is also an instance of r s' d Range: SlotDefinition is_class_field 0..1 Description: indicates that any instance, i, the domain of this slot will include an assert of i s range Range: Boolean role 0..1 Description: the role played by the slot range Range: String is_usage_slot 0..1 Description: True means that this slot was defined in a slot_usage situation Range: Boolean usage_slot_name 0..1 Description: The name of the slot referenced in the slot_usage Range: String minimum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or higher than this Range: Integer maximum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or lowe than this Range: Integer pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String slot_definition\u279eis_a 0..1 Range: SlotDefinition slot_definition\u279emixins 0..* Range: SlotDefinition slot_definition\u279eapply_to 0..* Range: SlotDefinition","title":"Own"},{"location":"SlotDefinition/#inherited-from-definition","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String","title":"Inherited from definition:"},{"location":"SlotDefinition/#other-properties","text":"Aliases: slot field property attribute column variable Close Mappings: rdf:Property","title":"Other properties"},{"location":"String/","text":"Type: string A character string URI: linkml:String Root (builtin) type str","title":"Type: string"},{"location":"String/#type-string","text":"A character string URI: linkml:String Root (builtin) type str","title":"Type: string"},{"location":"SubsetDefinition/","text":"Class: subset_definition the name and description of a subset URI: linkml:SubsetDefinition Parents is_a: Element - a named element in the model Referenced by class Element in_subset 0..* SubsetDefinition SchemaDefinition subsets 0..* SubsetDefinition Attributes Inherited from element: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Class: subset_definition"},{"location":"SubsetDefinition/#class-subset_definition","text":"the name and description of a subset URI: linkml:SubsetDefinition","title":"Class: subset_definition"},{"location":"SubsetDefinition/#parents","text":"is_a: Element - a named element in the model","title":"Parents"},{"location":"SubsetDefinition/#referenced-by-class","text":"Element in_subset 0..* SubsetDefinition SchemaDefinition subsets 0..* SubsetDefinition","title":"Referenced by class"},{"location":"SubsetDefinition/#attributes","text":"","title":"Attributes"},{"location":"SubsetDefinition/#inherited-from-element","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"Time/","text":"Type: time A time object represents a (local) time of day, independent of any particular day URI: linkml:Time Root (builtin) type XSDTime Representation str","title":"Type: time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: linkml:Time Root (builtin) type XSDTime Representation str","title":"Type: time"},{"location":"TypeDefinition/","text":"Class: type_definition A data type definition. URI: linkml:TypeDefinition Parents is_a: Element - a named element in the model Referenced by class SchemaDefinition default_range 0..1 TypeDefinition TypeDefinition typeof 0..1 TypeDefinition SchemaDefinition types 0..* TypeDefinition Attributes Own typeof 0..1 Description: Names a parent type Range: TypeDefinition base 0..1 Description: python base type that implements this type definition Range: String type_definition\u279euri 0..1 Description: The uri that defines the possible values for the type definition Range: Uriorcurie repr 0..1 Description: the name of the python object that implements this type definition Range: String pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String Inherited from element: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Class: type_definition"},{"location":"TypeDefinition/#class-type_definition","text":"A data type definition. URI: linkml:TypeDefinition","title":"Class: type_definition"},{"location":"TypeDefinition/#parents","text":"is_a: Element - a named element in the model","title":"Parents"},{"location":"TypeDefinition/#referenced-by-class","text":"SchemaDefinition default_range 0..1 TypeDefinition TypeDefinition typeof 0..1 TypeDefinition SchemaDefinition types 0..* TypeDefinition","title":"Referenced by class"},{"location":"TypeDefinition/#attributes","text":"","title":"Attributes"},{"location":"TypeDefinition/#own","text":"typeof 0..1 Description: Names a parent type Range: TypeDefinition base 0..1 Description: python base type that implements this type definition Range: String type_definition\u279euri 0..1 Description: The uri that defines the possible values for the type definition Range: Uriorcurie repr 0..1 Description: the name of the python object that implements this type definition Range: String pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String","title":"Own"},{"location":"TypeDefinition/#inherited-from-element","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"UniqueKey/","text":"Class: unique_key a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey Uses Mixins mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations Referenced by class ClassDefinition unique_keys 0..* UniqueKey Attributes Own unique_key_slots 1..* Description: list of slot names that form a key Range: SlotDefinition Mixed in from extensible: extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension Mixed in from annotatable: annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Class: unique_key"},{"location":"UniqueKey/#class-unique_key","text":"a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey","title":"Class: unique_key"},{"location":"UniqueKey/#uses-mixins","text":"mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations","title":"Uses Mixins"},{"location":"UniqueKey/#referenced-by-class","text":"ClassDefinition unique_keys 0..* UniqueKey","title":"Referenced by class"},{"location":"UniqueKey/#attributes","text":"","title":"Attributes"},{"location":"UniqueKey/#own","text":"unique_key_slots 1..* Description: list of slot names that form a key Range: SlotDefinition","title":"Own"},{"location":"UniqueKey/#mixed-in-from-extensible","text":"extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Mixed in from extensible:"},{"location":"UniqueKey/#mixed-in-from-annotatable","text":"annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Mixed in from annotatable:"},{"location":"Uri/","text":"Type: uri a complete URI URI: linkml:Uri Root (builtin) type URI Representation str","title":"Type: uri"},{"location":"Uri/#type-uri","text":"a complete URI URI: linkml:Uri Root (builtin) type URI Representation str","title":"Type: uri"},{"location":"Uriorcurie/","text":"Type: uriorcurie a URI or a CURIE URI: linkml:Uriorcurie Root (builtin) type URIorCURIE Representation str","title":"Type: uriorcurie"},{"location":"Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: linkml:Uriorcurie Root (builtin) type URIorCURIE Representation str","title":"Type: uriorcurie"},{"location":"abstract/","text":"Slot: abstract an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. URI: linkml:abstract Domain and Range Definition \u2192 0..1 Boolean Parents Children Used by ClassDefinition Definition SlotDefinition","title":"Slot: abstract"},{"location":"abstract/#slot-abstract","text":"an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. URI: linkml:abstract","title":"Slot: abstract"},{"location":"abstract/#domain-and-range","text":"Definition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"abstract/#parents","text":"","title":"Parents"},{"location":"abstract/#children","text":"","title":"Children"},{"location":"abstract/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"alias/","text":"Slot: alias the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. URI: linkml:alias Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: alias"},{"location":"alias/#slot-alias","text":"the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. URI: linkml:alias","title":"Slot: alias"},{"location":"alias/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"alias/#parents","text":"","title":"Parents"},{"location":"alias/#children","text":"","title":"Children"},{"location":"alias/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"aliases/","text":"Slot: aliases URI: linkml:aliases Domain and Range Element \u2192 0..* String Parents Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:altLabel","title":"Slot: aliases"},{"location":"aliases/#slot-aliases","text":"URI: linkml:aliases","title":"Slot: aliases"},{"location":"aliases/#domain-and-range","text":"Element \u2192 0..* String","title":"Domain and Range"},{"location":"aliases/#parents","text":"","title":"Parents"},{"location":"aliases/#children","text":"","title":"Children"},{"location":"aliases/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"aliases/#other-properties","text":"Mappings: skos:altLabel","title":"Other properties"},{"location":"alt_description_source/","text":"Slot: source the source of an attributed description URI: linkml:alt_description_source Domain and Range AltDescription \u2192 1..1 String Parents Children Used by AltDescription","title":"Slot: source"},{"location":"alt_description_source/#slot-source","text":"the source of an attributed description URI: linkml:alt_description_source","title":"Slot: source"},{"location":"alt_description_source/#domain-and-range","text":"AltDescription \u2192 1..1 String","title":"Domain and Range"},{"location":"alt_description_source/#parents","text":"","title":"Parents"},{"location":"alt_description_source/#children","text":"","title":"Children"},{"location":"alt_description_source/#used-by","text":"AltDescription","title":"Used by"},{"location":"alt_description_text/","text":"Slot: description text of an attributed description URI: linkml:alt_description_text Domain and Range AltDescription \u2192 1..1 String Parents Children Used by AltDescription","title":"Slot: description"},{"location":"alt_description_text/#slot-description","text":"text of an attributed description URI: linkml:alt_description_text","title":"Slot: description"},{"location":"alt_description_text/#domain-and-range","text":"AltDescription \u2192 1..1 String","title":"Domain and Range"},{"location":"alt_description_text/#parents","text":"","title":"Parents"},{"location":"alt_description_text/#children","text":"","title":"Children"},{"location":"alt_description_text/#used-by","text":"AltDescription","title":"Used by"},{"location":"alt_descriptions/","text":"Slot: alt_descriptions URI: linkml:alt_descriptions Domain and Range Element \u2192 0..* AltDescription Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Slot: alt_descriptions"},{"location":"alt_descriptions/#slot-alt_descriptions","text":"URI: linkml:alt_descriptions","title":"Slot: alt_descriptions"},{"location":"alt_descriptions/#domain-and-range","text":"Element \u2192 0..* AltDescription","title":"Domain and Range"},{"location":"alt_descriptions/#parents","text":"","title":"Parents"},{"location":"alt_descriptions/#children","text":"","title":"Children"},{"location":"alt_descriptions/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"annotations/","text":"Slot: annotations a collection of tag/text tuples with the semantics of OWL Annotation URI: linkml:annotations Domain and Range Annotatable \u2192 0..* Annotation Parents is_a: extensions Children Used by Annotatable Annotation ClassDefinition Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition UniqueKey","title":"Slot: annotations"},{"location":"annotations/#slot-annotations","text":"a collection of tag/text tuples with the semantics of OWL Annotation URI: linkml:annotations","title":"Slot: annotations"},{"location":"annotations/#domain-and-range","text":"Annotatable \u2192 0..* Annotation","title":"Domain and Range"},{"location":"annotations/#parents","text":"is_a: extensions","title":"Parents"},{"location":"annotations/#children","text":"","title":"Children"},{"location":"annotations/#used-by","text":"Annotatable Annotation ClassDefinition Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition UniqueKey","title":"Used by"},{"location":"apply_to/","text":"Slot: apply_to Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. URI: linkml:apply_to Domain and Range Definition \u2192 0..* Definition Parents Children class_definition\u279eapply_to slot_definition\u279eapply_to Used by Definition","title":"Slot: apply_to"},{"location":"apply_to/#slot-apply_to","text":"Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. 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URI: linkml:exact_mappings","title":"Slot: exact mappings"},{"location":"exact_mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"exact_mappings/#parents","text":"is_a: mappings","title":"Parents"},{"location":"exact_mappings/#children","text":"","title":"Children"},{"location":"exact_mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"exact_mappings/#other-properties","text":"Mappings: skos:exactMatch","title":"Other properties"},{"location":"examples/","text":"Slot: examples example usages of an element URI: linkml:examples Domain and Range Element \u2192 0..* Example Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties In Subsets: owl","title":"Slot: examples"},{"location":"examples/#slot-examples","text":"example usages of an element URI: linkml:examples","title":"Slot: examples"},{"location":"examples/#domain-and-range","text":"Element \u2192 0..* Example","title":"Domain and Range"},{"location":"examples/#parents","text":"","title":"Parents"},{"location":"examples/#children","text":"","title":"Children"},{"location":"examples/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"examples/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"extension_tag/","text":"Slot: tag a tag associated with an extension URI: linkml:extension_tag Domain and Range Extension \u2192 1..1 Uriorcurie Parents Children Used by Annotation Extension","title":"Slot: tag"},{"location":"extension_tag/#slot-tag","text":"a tag associated with an extension URI: linkml:extension_tag","title":"Slot: tag"},{"location":"extension_tag/#domain-and-range","text":"Extension \u2192 1..1 Uriorcurie","title":"Domain and Range"},{"location":"extension_tag/#parents","text":"","title":"Parents"},{"location":"extension_tag/#children","text":"","title":"Children"},{"location":"extension_tag/#used-by","text":"Annotation Extension","title":"Used by"},{"location":"extension_value/","text":"Slot: value the actual annotation URI: linkml:extension_value Domain and Range Extension \u2192 1..1 String Parents Children Used by Annotation Extension","title":"Slot: value"},{"location":"extension_value/#slot-value","text":"the actual annotation URI: linkml:extension_value","title":"Slot: value"},{"location":"extension_value/#domain-and-range","text":"Extension \u2192 1..1 String","title":"Domain and Range"},{"location":"extension_value/#parents","text":"","title":"Parents"},{"location":"extension_value/#children","text":"","title":"Children"},{"location":"extension_value/#used-by","text":"Annotation Extension","title":"Used by"},{"location":"extensions/","text":"Slot: extensions a tag/text tuple attached to an arbitrary element URI: linkml:extensions Domain and Range Extensible \u2192 0..* Extension Parents Children annotations Used by Annotation ClassDefinition Definition Element EnumDefinition Extensible Extension PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition UniqueKey","title":"Slot: extensions"},{"location":"extensions/#slot-extensions","text":"a tag/text tuple attached to an arbitrary element URI: linkml:extensions","title":"Slot: extensions"},{"location":"extensions/#domain-and-range","text":"Extensible \u2192 0..* Extension","title":"Domain and Range"},{"location":"extensions/#parents","text":"","title":"Parents"},{"location":"extensions/#children","text":"annotations","title":"Children"},{"location":"extensions/#used-by","text":"Annotation ClassDefinition Definition Element EnumDefinition Extensible Extension PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition UniqueKey","title":"Used by"},{"location":"from_schema/","text":"Slot: from_schema id of the schema that defined the element URI: linkml:from_schema Domain and Range Element \u2192 0..1 Uri Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:inScheme","title":"Slot: from_schema"},{"location":"from_schema/#slot-from_schema","text":"id of the schema that defined the element URI: linkml:from_schema","title":"Slot: from_schema"},{"location":"from_schema/#domain-and-range","text":"Element \u2192 0..1 Uri","title":"Domain and Range"},{"location":"from_schema/#parents","text":"","title":"Parents"},{"location":"from_schema/#children","text":"","title":"Children"},{"location":"from_schema/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"from_schema/#other-properties","text":"Mappings: skos:inScheme","title":"Other properties"},{"location":"generation_date/","text":"Slot: generation_date date and time that the schema was loaded/generated URI: linkml:generation_date Domain and Range SchemaDefinition \u2192 0..1 Datetime Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: generation_date"},{"location":"generation_date/#slot-generation_date","text":"date and time that the schema was loaded/generated URI: linkml:generation_date","title":"Slot: generation_date"},{"location":"generation_date/#domain-and-range","text":"SchemaDefinition \u2192 0..1 Datetime","title":"Domain and Range"},{"location":"generation_date/#parents","text":"","title":"Parents"},{"location":"generation_date/#children","text":"","title":"Children"},{"location":"generation_date/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"generation_date/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"home/","text":"Introduction about my_schema","title":"Home"},{"location":"home/#introduction","text":"about my_schema","title":"Introduction"},{"location":"id/","text":"Slot: id The official schema URI URI: linkml:id Domain and Range SchemaDefinition \u2192 1..1 Uri Parents Children Used by SchemaDefinition","title":"Slot: id"},{"location":"id/#slot-id","text":"The official schema URI URI: linkml:id","title":"Slot: id"},{"location":"id/#domain-and-range","text":"SchemaDefinition \u2192 1..1 Uri","title":"Domain and Range"},{"location":"id/#parents","text":"","title":"Parents"},{"location":"id/#children","text":"","title":"Children"},{"location":"id/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"id_prefixes/","text":"Slot: id_prefixes the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes Domain and Range Element \u2192 0..* Ncname Parents Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Comments: Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open) See also: https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28","title":"Slot: id_prefixes"},{"location":"id_prefixes/#slot-id_prefixes","text":"the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes","title":"Slot: id_prefixes"},{"location":"id_prefixes/#domain-and-range","text":"Element \u2192 0..* Ncname","title":"Domain and Range"},{"location":"id_prefixes/#parents","text":"","title":"Parents"},{"location":"id_prefixes/#children","text":"","title":"Children"},{"location":"id_prefixes/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"id_prefixes/#other-properties","text":"Comments: Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open) See also: https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28","title":"Other properties"},{"location":"identifier/","text":"Slot: identifier True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Aliases: primary key ID UID code Comments: identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both See also: https://en.wikipedia.org/wiki/Identifier","title":"Slot: identifier"},{"location":"identifier/#slot-identifier","text":"True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier","title":"Slot: identifier"},{"location":"identifier/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"identifier/#parents","text":"","title":"Parents"},{"location":"identifier/#children","text":"","title":"Children"},{"location":"identifier/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"identifier/#other-properties","text":"Aliases: primary key ID UID code Comments: identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both See also: https://en.wikipedia.org/wiki/Identifier","title":"Other properties"},{"location":"ifabsent/","text":"Slot: ifabsent function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: ifabsent"},{"location":"ifabsent/#slot-ifabsent","text":"function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent","title":"Slot: ifabsent"},{"location":"ifabsent/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"ifabsent/#parents","text":"","title":"Parents"},{"location":"ifabsent/#children","text":"","title":"Children"},{"location":"ifabsent/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"imported_from/","text":"Slot: imported_from the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from Domain and Range Element \u2192 0..1 String Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Slot: imported_from"},{"location":"imported_from/#slot-imported_from","text":"the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from","title":"Slot: imported_from"},{"location":"imported_from/#domain-and-range","text":"Element \u2192 0..1 String","title":"Domain and Range"},{"location":"imported_from/#parents","text":"","title":"Parents"},{"location":"imported_from/#children","text":"","title":"Children"},{"location":"imported_from/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"imports/","text":"Slot: imports other schemas that are included in this schema URI: linkml:imports Domain and Range SchemaDefinition \u2192 0..* Uriorcurie Parents Children Used by SchemaDefinition","title":"Slot: imports"},{"location":"imports/#slot-imports","text":"other schemas that are included in this schema URI: linkml:imports","title":"Slot: imports"},{"location":"imports/#domain-and-range","text":"SchemaDefinition \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"imports/#parents","text":"","title":"Parents"},{"location":"imports/#children","text":"","title":"Children"},{"location":"imports/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"in_subset/","text":"Slot: in_subset used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: linkml:in_subset Domain and Range Element \u2192 0..* SubsetDefinition Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: OIO:inSubset","title":"Slot: in_subset"},{"location":"in_subset/#slot-in_subset","text":"used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: linkml:in_subset","title":"Slot: in_subset"},{"location":"in_subset/#domain-and-range","text":"Element \u2192 0..* SubsetDefinition","title":"Domain and Range"},{"location":"in_subset/#parents","text":"","title":"Parents"},{"location":"in_subset/#children","text":"","title":"Children"},{"location":"in_subset/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"in_subset/#other-properties","text":"Mappings: OIO:inSubset","title":"Other properties"},{"location":"inherited/","text":"Slot: inherited true means that the value of a slot is inherited by subclasses URI: linkml:inherited Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: Inherited applies to slot values. Parent slots are always inherited by subclasses","title":"Slot: inherited"},{"location":"inherited/#slot-inherited","text":"true means that the value of a slot is inherited by subclasses URI: linkml:inherited","title":"Slot: inherited"},{"location":"inherited/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"inherited/#parents","text":"","title":"Parents"},{"location":"inherited/#children","text":"","title":"Children"},{"location":"inherited/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inherited/#other-properties","text":"Comments: Inherited applies to slot values. Parent slots are always inherited by subclasses","title":"Other properties"},{"location":"inlined/","text":"Slot: inlined True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: classes without keys or identifiers are necessarily inlined as lists","title":"Slot: inlined"},{"location":"inlined/#slot-inlined","text":"True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined","title":"Slot: inlined"},{"location":"inlined/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"inlined/#parents","text":"","title":"Parents"},{"location":"inlined/#children","text":"","title":"Children"},{"location":"inlined/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inlined/#other-properties","text":"Comments: classes without keys or identifiers are necessarily inlined as lists","title":"Other properties"},{"location":"inlined_as_list/","text":"Slot: inlined_as_list True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#slot-inlined_as_list","text":"True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"inlined_as_list/#parents","text":"","title":"Parents"},{"location":"inlined_as_list/#children","text":"","title":"Children"},{"location":"inlined_as_list/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inlined_as_list/#other-properties","text":"Comments: The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.","title":"Other properties"},{"location":"inverse/","text":"Slot: inverse indicates that any instance of d s r implies that there is also an instance of r s' d URI: linkml:inverse Domain and Range SlotDefinition \u2192 0..1 SlotDefinition Parents Children Used by SlotDefinition Other properties Mappings: owl:inverseOf","title":"Slot: inverse"},{"location":"inverse/#slot-inverse","text":"indicates that any instance of d s r implies that there is also an instance of r s' d URI: linkml:inverse","title":"Slot: inverse"},{"location":"inverse/#domain-and-range","text":"SlotDefinition \u2192 0..1 SlotDefinition","title":"Domain and Range"},{"location":"inverse/#parents","text":"","title":"Parents"},{"location":"inverse/#children","text":"","title":"Children"},{"location":"inverse/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inverse/#other-properties","text":"Mappings: owl:inverseOf","title":"Other properties"},{"location":"is_a/","text":"Slot: is_a specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a Domain and Range Definition \u2192 0..1 Definition Parents Children class_definition\u279eis_a permissible_value\u279eis_a slot_definition\u279eis_a Used by Definition","title":"Slot: is_a"},{"location":"is_a/#slot-is_a","text":"specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a","title":"Slot: is_a"},{"location":"is_a/#domain-and-range","text":"Definition \u2192 0..1 Definition","title":"Domain and Range"},{"location":"is_a/#parents","text":"","title":"Parents"},{"location":"is_a/#children","text":"class_definition\u279eis_a permissible_value\u279eis_a slot_definition\u279eis_a","title":"Children"},{"location":"is_a/#used-by","text":"Definition","title":"Used by"},{"location":"is_class_field/","text":"Slot: is_class_field indicates that any instance, i, the domain of this slot will include an assert of i s range URI: linkml:is_class_field Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: is_class_field"},{"location":"is_class_field/#slot-is_class_field","text":"indicates that any instance, i, the domain of this slot will include an assert of i s range URI: linkml:is_class_field","title":"Slot: is_class_field"},{"location":"is_class_field/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"is_class_field/#parents","text":"","title":"Parents"},{"location":"is_class_field/#children","text":"","title":"Children"},{"location":"is_class_field/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"is_usage_slot/","text":"Slot: is_usage_slot (deprecated) True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: is_usage_slot _(deprecated)_"},{"location":"is_usage_slot/#slot-is_usage_slot-deprecated","text":"True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot","title":"Slot: is_usage_slot (deprecated)"},{"location":"is_usage_slot/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"is_usage_slot/#parents","text":"","title":"Parents"},{"location":"is_usage_slot/#children","text":"","title":"Children"},{"location":"is_usage_slot/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"key/","text":"Slot: key True means that the key slot(s) uniquely identify the container. URI: linkml:key Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: see also 'unique_key' key is inherited a given domain can have at most one key slot (restriction to be removed in the future) identifiers and keys are mutually exclusive. A given domain cannot have both a key slot is automatically required. Keys cannot be optional","title":"Slot: key"},{"location":"key/#slot-key","text":"True means that the key slot(s) uniquely identify the container. URI: linkml:key","title":"Slot: key"},{"location":"key/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"key/#parents","text":"","title":"Parents"},{"location":"key/#children","text":"","title":"Children"},{"location":"key/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"key/#other-properties","text":"Comments: see also 'unique_key' key is inherited a given domain can have at most one key slot (restriction to be removed in the future) identifiers and keys are mutually exclusive. A given domain cannot have both a key slot is automatically required. Keys cannot be optional","title":"Other properties"},{"location":"last_updated_on/","text":"Slot: last_updated_on time at which the element was last updated URI: linkml:last_updated_on Domain and Range Element \u2192 0..1 Datetime Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Mappings: pav:lastUpdatedOn","title":"Slot: last_updated_on"},{"location":"last_updated_on/#slot-last_updated_on","text":"time at which the element was last updated URI: linkml:last_updated_on","title":"Slot: last_updated_on"},{"location":"last_updated_on/#domain-and-range","text":"Element \u2192 0..1 Datetime","title":"Domain and Range"},{"location":"last_updated_on/#parents","text":"","title":"Parents"},{"location":"last_updated_on/#children","text":"","title":"Children"},{"location":"last_updated_on/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"last_updated_on/#other-properties","text":"Mappings: pav:lastUpdatedOn","title":"Other properties"},{"location":"license/","text":"Slot: license license for the schema URI: linkml:license Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties Mappings: dcterms:license In Subsets: owl","title":"Slot: license"},{"location":"license/#slot-license","text":"license for the schema URI: linkml:license","title":"Slot: license"},{"location":"license/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"license/#parents","text":"","title":"Parents"},{"location":"license/#children","text":"","title":"Children"},{"location":"license/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"license/#other-properties","text":"Mappings: dcterms:license In Subsets: owl","title":"Other properties"},{"location":"local_name_source/","text":"Slot: local_name_source the ncname of the source of the name URI: linkml:local_name_source Domain and Range LocalName \u2192 1..1 Ncname Parents Children Used by LocalName","title":"Slot: local_name_source"},{"location":"local_name_source/#slot-local_name_source","text":"the ncname of the source of the name URI: linkml:local_name_source","title":"Slot: local_name_source"},{"location":"local_name_source/#domain-and-range","text":"LocalName \u2192 1..1 Ncname","title":"Domain and Range"},{"location":"local_name_source/#parents","text":"","title":"Parents"},{"location":"local_name_source/#children","text":"","title":"Children"},{"location":"local_name_source/#used-by","text":"LocalName","title":"Used by"},{"location":"local_name_value/","text":"Slot: local_name_value a name assigned to an element in a given ontology URI: linkml:local_name_value Domain and Range LocalName \u2192 1..1 String Parents Children Used by LocalName Other properties Mappings: skos:altLabel","title":"Slot: local_name_value"},{"location":"local_name_value/#slot-local_name_value","text":"a name assigned to an element in a given ontology URI: linkml:local_name_value","title":"Slot: local_name_value"},{"location":"local_name_value/#domain-and-range","text":"LocalName \u2192 1..1 String","title":"Domain and Range"},{"location":"local_name_value/#parents","text":"","title":"Parents"},{"location":"local_name_value/#children","text":"","title":"Children"},{"location":"local_name_value/#used-by","text":"LocalName","title":"Used by"},{"location":"local_name_value/#other-properties","text":"Mappings: skos:altLabel","title":"Other properties"},{"location":"local_names/","text":"Slot: local_names URI: linkml:local_names Domain and Range Element \u2192 0..* LocalName Parents Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Slot: local_names"},{"location":"local_names/#slot-local_names","text":"URI: linkml:local_names","title":"Slot: local_names"},{"location":"local_names/#domain-and-range","text":"Element \u2192 0..* LocalName","title":"Domain and Range"},{"location":"local_names/#parents","text":"","title":"Parents"},{"location":"local_names/#children","text":"","title":"Children"},{"location":"local_names/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"mappings/","text":"Slot: mappings A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. URI: linkml:mappings Domain and Range None \u2192 0..* Uriorcurie Parents Children broad mappings close mappings exact mappings narrow mappings related mappings Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:mappingRelation","title":"Slot: mappings"},{"location":"mappings/#slot-mappings","text":"A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. URI: linkml:mappings","title":"Slot: mappings"},{"location":"mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"mappings/#parents","text":"","title":"Parents"},{"location":"mappings/#children","text":"broad mappings close mappings exact mappings narrow mappings related mappings","title":"Children"},{"location":"mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"mappings/#other-properties","text":"Mappings: skos:mappingRelation","title":"Other properties"},{"location":"maximum_value/","text":"Slot: maximum_value for slots with ranges of type number, the value must be equal to or lowe than this URI: linkml:maximum_value Domain and Range SlotDefinition \u2192 0..1 Integer Parents Children Used by SlotDefinition","title":"Slot: maximum_value"},{"location":"maximum_value/#slot-maximum_value","text":"for slots with ranges of type number, the value must be equal to or lowe than this URI: linkml:maximum_value","title":"Slot: maximum_value"},{"location":"maximum_value/#domain-and-range","text":"SlotDefinition \u2192 0..1 Integer","title":"Domain and Range"},{"location":"maximum_value/#parents","text":"","title":"Parents"},{"location":"maximum_value/#children","text":"","title":"Children"},{"location":"maximum_value/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"meaning/","text":"Slot: meaning the value meaning (in the 11179 sense) of a permissible value URI: linkml:meaning Domain and Range PermissibleValue \u2192 0..1 Uriorcurie Parents Children Used by PermissibleValue","title":"Slot: meaning"},{"location":"meaning/#slot-meaning","text":"the value meaning (in the 11179 sense) of a permissible value URI: linkml:meaning","title":"Slot: meaning"},{"location":"meaning/#domain-and-range","text":"PermissibleValue \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"meaning/#parents","text":"","title":"Parents"},{"location":"meaning/#children","text":"","title":"Children"},{"location":"meaning/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"metamodel_version/","text":"Slot: metamodel_version Version of the metamodel used to load the schema URI: linkml:metamodel_version Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: metamodel_version"},{"location":"metamodel_version/#slot-metamodel_version","text":"Version of the metamodel used to load the schema URI: linkml:metamodel_version","title":"Slot: metamodel_version"},{"location":"metamodel_version/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"metamodel_version/#parents","text":"","title":"Parents"},{"location":"metamodel_version/#children","text":"","title":"Children"},{"location":"metamodel_version/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"metamodel_version/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"minimum_value/","text":"Slot: minimum_value for slots with ranges of type number, the value must be equal to or higher than this URI: linkml:minimum_value Domain and Range SlotDefinition \u2192 0..1 Integer Parents Children Used by SlotDefinition","title":"Slot: minimum_value"},{"location":"minimum_value/#slot-minimum_value","text":"for slots with ranges of type number, the value must be equal to or higher than this URI: linkml:minimum_value","title":"Slot: minimum_value"},{"location":"minimum_value/#domain-and-range","text":"SlotDefinition \u2192 0..1 Integer","title":"Domain and Range"},{"location":"minimum_value/#parents","text":"","title":"Parents"},{"location":"minimum_value/#children","text":"","title":"Children"},{"location":"minimum_value/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"mixin/","text":"Slot: mixin this slot or class can only be used as a mixin. URI: linkml:mixin Domain and Range Definition \u2192 0..1 Boolean Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Aliases: trait See also: https://en.wikipedia.org/wiki/Mixin","title":"Slot: mixin"},{"location":"mixin/#slot-mixin","text":"this slot or class can only be used as a mixin. URI: linkml:mixin","title":"Slot: mixin"},{"location":"mixin/#domain-and-range","text":"Definition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"mixin/#parents","text":"","title":"Parents"},{"location":"mixin/#children","text":"","title":"Children"},{"location":"mixin/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"mixin/#other-properties","text":"Aliases: trait See also: https://en.wikipedia.org/wiki/Mixin","title":"Other properties"},{"location":"mixins/","text":"Slot: mixins List of definitions to be mixed in. Targets may be any definition of the same type URI: linkml:mixins Domain and Range Definition \u2192 0..* Definition Parents Children class_definition\u279emixins permissible_value\u279emixins slot_definition\u279emixins Used by Definition Other properties Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance See also: https://en.wikipedia.org/wiki/Mixin","title":"Slot: mixins"},{"location":"mixins/#slot-mixins","text":"List of definitions to be mixed in. Targets may be any definition of the same type URI: linkml:mixins","title":"Slot: mixins"},{"location":"mixins/#domain-and-range","text":"Definition \u2192 0..* Definition","title":"Domain and Range"},{"location":"mixins/#parents","text":"","title":"Parents"},{"location":"mixins/#children","text":"class_definition\u279emixins permissible_value\u279emixins slot_definition\u279emixins","title":"Children"},{"location":"mixins/#used-by","text":"Definition","title":"Used by"},{"location":"mixins/#other-properties","text":"Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance See also: https://en.wikipedia.org/wiki/Mixin","title":"Other properties"},{"location":"modified_by/","text":"Slot: modified_by agent that modified the element URI: linkml:modified_by Domain and Range Element \u2192 0..1 Uriorcurie Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Mappings: oslc:modifiedBy","title":"Slot: modified_by"},{"location":"modified_by/#slot-modified_by","text":"agent that modified the element URI: linkml:modified_by","title":"Slot: modified_by"},{"location":"modified_by/#domain-and-range","text":"Element \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"modified_by/#parents","text":"","title":"Parents"},{"location":"modified_by/#children","text":"","title":"Children"},{"location":"modified_by/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"modified_by/#other-properties","text":"Mappings: oslc:modifiedBy","title":"Other properties"},{"location":"multivalued/","text":"Slot: multivalued true means that slot can have more than one value URI: linkml:multivalued Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: multivalued"},{"location":"multivalued/#slot-multivalued","text":"true means that slot can have more than one value URI: linkml:multivalued","title":"Slot: multivalued"},{"location":"multivalued/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"multivalued/#parents","text":"","title":"Parents"},{"location":"multivalued/#children","text":"","title":"Children"},{"location":"multivalued/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"name/","text":"Slot: name the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. URI: linkml:name Domain and Range Element \u2192 1..1 String Parents Children schema_definition\u279ename Used by ClassDefinition Definition Element EnumDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: rdfs:label schema:name In Subsets: owl See also: https://en.wikipedia.org/wiki/Data_element_name","title":"Slot: name"},{"location":"name/#slot-name","text":"the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. URI: linkml:name","title":"Slot: name"},{"location":"name/#domain-and-range","text":"Element \u2192 1..1 String","title":"Domain and Range"},{"location":"name/#parents","text":"","title":"Parents"},{"location":"name/#children","text":"schema_definition\u279ename","title":"Children"},{"location":"name/#used-by","text":"ClassDefinition Definition Element EnumDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"name/#other-properties","text":"Mappings: rdfs:label schema:name In Subsets: owl See also: https://en.wikipedia.org/wiki/Data_element_name","title":"Other properties"},{"location":"narrow_mappings/","text":"Slot: narrow mappings A list of terms from different schemas or terminology systems that have narrower meaning. URI: linkml:narrow_mappings Domain and Range None \u2192 0..* Uriorcurie Parents is_a: mappings Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:narrowMatch","title":"Slot: narrow mappings"},{"location":"narrow_mappings/#slot-narrow-mappings","text":"A list of terms from different schemas or terminology systems that have narrower meaning. URI: linkml:narrow_mappings","title":"Slot: narrow mappings"},{"location":"narrow_mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"narrow_mappings/#parents","text":"is_a: mappings","title":"Parents"},{"location":"narrow_mappings/#children","text":"","title":"Children"},{"location":"narrow_mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"narrow_mappings/#other-properties","text":"Mappings: skos:narrowMatch","title":"Other properties"},{"location":"notes/","text":"Slot: notes editorial notes about an element intended for internal consumption URI: linkml:notes Domain and Range Element \u2192 0..* String Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:editorialNote In Subsets: owl","title":"Slot: notes"},{"location":"notes/#slot-notes","text":"editorial notes about an element intended for internal consumption URI: linkml:notes","title":"Slot: notes"},{"location":"notes/#domain-and-range","text":"Element \u2192 0..* String","title":"Domain and Range"},{"location":"notes/#parents","text":"","title":"Parents"},{"location":"notes/#children","text":"","title":"Children"},{"location":"notes/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"notes/#other-properties","text":"Mappings: skos:editorialNote In Subsets: owl","title":"Other properties"},{"location":"owner/","text":"Slot: owner (deprecated) the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner Domain and Range SlotDefinition \u2192 0..1 Definition Parents Children Used by SlotDefinition","title":"Slot: owner _(deprecated)_"},{"location":"owner/#slot-owner-deprecated","text":"the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner","title":"Slot: owner (deprecated)"},{"location":"owner/#domain-and-range","text":"SlotDefinition \u2192 0..1 Definition","title":"Domain and Range"},{"location":"owner/#parents","text":"","title":"Parents"},{"location":"owner/#children","text":"","title":"Children"},{"location":"owner/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"pattern/","text":"Slot: pattern the string value of the slot must conform to this regular expression URI: linkml:pattern Domain and Range Definition \u2192 0..1 String Parents Children Used by SlotDefinition TypeDefinition","title":"Slot: pattern"},{"location":"pattern/#slot-pattern","text":"the string value of the slot must conform to this regular expression URI: linkml:pattern","title":"Slot: pattern"},{"location":"pattern/#domain-and-range","text":"Definition \u2192 0..1 String","title":"Domain and Range"},{"location":"pattern/#parents","text":"","title":"Parents"},{"location":"pattern/#children","text":"","title":"Children"},{"location":"pattern/#used-by","text":"SlotDefinition TypeDefinition","title":"Used by"},{"location":"permissible_value_is_a/","text":"Slot: is_a URI: linkml:permissible_value_is_a Domain and Range PermissibleValue \u2192 0..1 PermissibleValue Parents is_a: is_a Children Used by PermissibleValue","title":"Slot: is_a"},{"location":"permissible_value_is_a/#slot-is_a","text":"URI: linkml:permissible_value_is_a","title":"Slot: is_a"},{"location":"permissible_value_is_a/#domain-and-range","text":"PermissibleValue \u2192 0..1 PermissibleValue","title":"Domain and Range"},{"location":"permissible_value_is_a/#parents","text":"is_a: is_a","title":"Parents"},{"location":"permissible_value_is_a/#children","text":"","title":"Children"},{"location":"permissible_value_is_a/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"permissible_value_mixins/","text":"Slot: mixins URI: linkml:permissible_value_mixins Domain and Range PermissibleValue \u2192 0..* PermissibleValue Parents is_a: mixins Children Used by PermissibleValue","title":"Slot: mixins"},{"location":"permissible_value_mixins/#slot-mixins","text":"URI: linkml:permissible_value_mixins","title":"Slot: mixins"},{"location":"permissible_value_mixins/#domain-and-range","text":"PermissibleValue \u2192 0..* PermissibleValue","title":"Domain and Range"},{"location":"permissible_value_mixins/#parents","text":"is_a: mixins","title":"Parents"},{"location":"permissible_value_mixins/#children","text":"","title":"Children"},{"location":"permissible_value_mixins/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"permissible_values/","text":"Slot: permissible_values A list of possible values for a slot range URI: linkml:permissible_values Domain and Range EnumDefinition \u2192 0..* PermissibleValue Parents Children Used by EnumDefinition","title":"Slot: permissible_values"},{"location":"permissible_values/#slot-permissible_values","text":"A list of possible values for a slot range URI: linkml:permissible_values","title":"Slot: permissible_values"},{"location":"permissible_values/#domain-and-range","text":"EnumDefinition \u2192 0..* PermissibleValue","title":"Domain and Range"},{"location":"permissible_values/#parents","text":"","title":"Parents"},{"location":"permissible_values/#children","text":"","title":"Children"},{"location":"permissible_values/#used-by","text":"EnumDefinition","title":"Used by"},{"location":"prefix_prefix/","text":"Slot: prefix_prefix the nsname (sans ':' for a given prefix) URI: linkml:prefix_prefix Domain and Range Prefix \u2192 1..1 Ncname Parents Children Used by Prefix","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#slot-prefix_prefix","text":"the nsname (sans ':' for a given prefix) URI: linkml:prefix_prefix","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#domain-and-range","text":"Prefix \u2192 1..1 Ncname","title":"Domain and Range"},{"location":"prefix_prefix/#parents","text":"","title":"Parents"},{"location":"prefix_prefix/#children","text":"","title":"Children"},{"location":"prefix_prefix/#used-by","text":"Prefix","title":"Used by"},{"location":"prefix_reference/","text":"Slot: prefix_reference A URI associated with a given prefix URI: linkml:prefix_reference Domain and Range Prefix \u2192 1..1 Uri Parents Children Used by Prefix","title":"Slot: prefix_reference"},{"location":"prefix_reference/#slot-prefix_reference","text":"A URI associated with a given prefix URI: linkml:prefix_reference","title":"Slot: prefix_reference"},{"location":"prefix_reference/#domain-and-range","text":"Prefix \u2192 1..1 Uri","title":"Domain and Range"},{"location":"prefix_reference/#parents","text":"","title":"Parents"},{"location":"prefix_reference/#children","text":"","title":"Children"},{"location":"prefix_reference/#used-by","text":"Prefix","title":"Used by"},{"location":"prefixes/","text":"Slot: prefixes prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: linkml:prefixes Domain and Range SchemaDefinition \u2192 0..* Prefix Parents Children Used by SchemaDefinition","title":"Slot: prefixes"},{"location":"prefixes/#slot-prefixes","text":"prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: linkml:prefixes","title":"Slot: prefixes"},{"location":"prefixes/#domain-and-range","text":"SchemaDefinition \u2192 0..* Prefix","title":"Domain and Range"},{"location":"prefixes/#parents","text":"","title":"Parents"},{"location":"prefixes/#children","text":"","title":"Children"},{"location":"prefixes/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"pv_formula/","text":"Slot: pv_formula Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula Domain and Range EnumDefinition \u2192 0..1 pv_formula_options Parents Children Used by EnumDefinition Other properties Comments: you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid","title":"Slot: pv_formula"},{"location":"pv_formula/#slot-pv_formula","text":"Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula","title":"Slot: pv_formula"},{"location":"pv_formula/#domain-and-range","text":"EnumDefinition \u2192 0..1 pv_formula_options","title":"Domain and Range"},{"location":"pv_formula/#parents","text":"","title":"Parents"},{"location":"pv_formula/#children","text":"","title":"Children"},{"location":"pv_formula/#used-by","text":"EnumDefinition","title":"Used by"},{"location":"pv_formula/#other-properties","text":"Comments: you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid","title":"Other properties"},{"location":"pv_formula_options/","text":"Enum: pv_formula_options The formula used to generate the set of permissible values from the code_set values URI: linkml:pv_formula_options Other properties Permissible Values Text Description Meaning Other Information CODE The permissible values are the set of possible codes in the code set CURIE The permissible values are the set of CURIES in the code set URI The permissible values are the set of code URIs in the code set FHIR_CODING The permissible values are the set of FHIR coding elements derived from the code set","title":"Enum: pv_formula_options"},{"location":"pv_formula_options/#enum-pv_formula_options","text":"The formula used to generate the set of permissible values from the code_set values URI: linkml:pv_formula_options","title":"Enum: pv_formula_options"},{"location":"pv_formula_options/#other-properties","text":"","title":"Other properties"},{"location":"pv_formula_options/#permissible-values","text":"Text Description Meaning Other Information CODE The permissible values are the set of possible codes in the code set CURIE The permissible values are the set of CURIES in the code set URI The permissible values are the set of code URIs in the code set FHIR_CODING The permissible values are the set of FHIR coding elements derived from the code set","title":"Permissible Values"},{"location":"range/","text":"Slot: range defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 URI: linkml:range Domain and Range SlotDefinition \u2192 0..1 Element Parents Children Used by SlotDefinition Other properties Comments: range is underspecified, as not all elements can appear as the range of a slot.","title":"Slot: range"},{"location":"range/#slot-range","text":"defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 URI: linkml:range","title":"Slot: range"},{"location":"range/#domain-and-range","text":"SlotDefinition \u2192 0..1 Element","title":"Domain and Range"},{"location":"range/#parents","text":"","title":"Parents"},{"location":"range/#children","text":"","title":"Children"},{"location":"range/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"range/#other-properties","text":"Comments: range is underspecified, as not all elements can appear as the range of a slot.","title":"Other properties"},{"location":"readonly/","text":"Slot: readonly If present, slot is read only. Text explains why URI: linkml:readonly Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: readonly"},{"location":"readonly/#slot-readonly","text":"If present, slot is read only. Text explains why URI: linkml:readonly","title":"Slot: readonly"},{"location":"readonly/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"readonly/#parents","text":"","title":"Parents"},{"location":"readonly/#children","text":"","title":"Children"},{"location":"readonly/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"recommended/","text":"Slot: recommended true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data See also: https://github.com/linkml/linkml/issues/177","title":"Slot: recommended"},{"location":"recommended/#slot-recommended","text":"true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended","title":"Slot: recommended"},{"location":"recommended/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"recommended/#parents","text":"","title":"Parents"},{"location":"recommended/#children","text":"","title":"Children"},{"location":"recommended/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"recommended/#other-properties","text":"Comments: This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data See also: https://github.com/linkml/linkml/issues/177","title":"Other properties"},{"location":"related_mappings/","text":"Slot: related mappings A list of terms from different schemas or terminology systems that have related meaning. URI: linkml:related_mappings Domain and Range None \u2192 0..* Uriorcurie Parents is_a: mappings Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:relatedMatch","title":"Slot: related mappings"},{"location":"related_mappings/#slot-related-mappings","text":"A list of terms from different schemas or terminology systems that have related meaning. URI: linkml:related_mappings","title":"Slot: related mappings"},{"location":"related_mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"related_mappings/#parents","text":"is_a: mappings","title":"Parents"},{"location":"related_mappings/#children","text":"","title":"Children"},{"location":"related_mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"related_mappings/#other-properties","text":"Mappings: skos:relatedMatch","title":"Other properties"},{"location":"repr/","text":"Slot: repr the name of the python object that implements this type definition URI: linkml:repr Domain and Range TypeDefinition \u2192 0..1 String Parents Children Used by TypeDefinition","title":"Slot: repr"},{"location":"repr/#slot-repr","text":"the name of the python object that implements this type definition URI: linkml:repr","title":"Slot: repr"},{"location":"repr/#domain-and-range","text":"TypeDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"repr/#parents","text":"","title":"Parents"},{"location":"repr/#children","text":"","title":"Children"},{"location":"repr/#used-by","text":"TypeDefinition","title":"Used by"},{"location":"required/","text":"Slot: required true means that the slot must be present in the loaded definition URI: linkml:required Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: required"},{"location":"required/#slot-required","text":"true means that the slot must be present in the loaded definition URI: linkml:required","title":"Slot: required"},{"location":"required/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"required/#parents","text":"","title":"Parents"},{"location":"required/#children","text":"","title":"Children"},{"location":"required/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"role/","text":"Slot: role the role played by the slot range URI: linkml:role Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: role"},{"location":"role/#slot-role","text":"the role played by the slot range URI: linkml:role","title":"Slot: role"},{"location":"role/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"role/#parents","text":"","title":"Parents"},{"location":"role/#children","text":"","title":"Children"},{"location":"role/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"schema_definition_name/","text":"Slot: name URI: linkml:schema_definition_name Domain and Range SchemaDefinition \u2192 1..1 Ncname Parents is_a: name Children Used by SchemaDefinition","title":"Slot: name"},{"location":"schema_definition_name/#slot-name","text":"URI: linkml:schema_definition_name","title":"Slot: name"},{"location":"schema_definition_name/#domain-and-range","text":"SchemaDefinition \u2192 1..1 Ncname","title":"Domain and Range"},{"location":"schema_definition_name/#parents","text":"is_a: name","title":"Parents"},{"location":"schema_definition_name/#children","text":"","title":"Children"},{"location":"schema_definition_name/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"see_also/","text":"Slot: see_also a reference URI: linkml:see_also Domain and Range Element \u2192 0..* Uriorcurie Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: rdfs:seeAlso In Subsets: owl","title":"Slot: see_also"},{"location":"see_also/#slot-see_also","text":"a reference URI: linkml:see_also","title":"Slot: see_also"},{"location":"see_also/#domain-and-range","text":"Element \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"see_also/#parents","text":"","title":"Parents"},{"location":"see_also/#children","text":"","title":"Children"},{"location":"see_also/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"see_also/#other-properties","text":"Mappings: rdfs:seeAlso In Subsets: owl","title":"Other properties"},{"location":"singular_name/","text":"Slot: singular_name a name that is used in the singular form URI: linkml:singular_name Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition Other properties Mappings: skos:altLabel","title":"Slot: singular_name"},{"location":"singular_name/#slot-singular_name","text":"a name that is used in the singular form URI: linkml:singular_name","title":"Slot: singular_name"},{"location":"singular_name/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"singular_name/#parents","text":"","title":"Parents"},{"location":"singular_name/#children","text":"","title":"Children"},{"location":"singular_name/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"singular_name/#other-properties","text":"Mappings: skos:altLabel","title":"Other properties"},{"location":"slot_definition_apply_to/","text":"Slot: apply_to URI: linkml:slot_definition_apply_to Domain and Range SlotDefinition \u2192 0..* SlotDefinition Parents is_a: apply_to Children Used by SlotDefinition","title":"Slot: apply_to"},{"location":"slot_definition_apply_to/#slot-apply_to","text":"URI: linkml:slot_definition_apply_to","title":"Slot: apply_to"},{"location":"slot_definition_apply_to/#domain-and-range","text":"SlotDefinition \u2192 0..* SlotDefinition","title":"Domain and 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slots"},{"location":"slot_definitions/#slot-slots","text":"slot definitions URI: linkml:slot_definitions","title":"Slot: slots"},{"location":"slot_definitions/#domain-and-range","text":"SchemaDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definitions/#parents","text":"","title":"Parents"},{"location":"slot_definitions/#children","text":"","title":"Children"},{"location":"slot_definitions/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"slot_uri/","text":"Slot: slot_uri predicate of this slot for semantic web application URI: linkml:slot_uri Domain and Range SlotDefinition \u2192 0..1 Uriorcurie Parents Children Used by SlotDefinition","title":"Slot: slot_uri"},{"location":"slot_uri/#slot-slot_uri","text":"predicate of this slot for semantic web application URI: linkml:slot_uri","title":"Slot: slot_uri"},{"location":"slot_uri/#domain-and-range","text":"SlotDefinition \u2192 0..1 Uriorcurie","title":"Domain and 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URI: linkml:slot_usage Domain and Range ClassDefinition \u2192 0..* SlotDefinition Parents Children Used by ClassDefinition Other properties Comments: Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints","title":"Slot: slot_usage"},{"location":"slot_usage/#slot-slot_usage","text":"the redefinition of a slot in the context of the containing class definition. URI: linkml:slot_usage","title":"Slot: slot_usage"},{"location":"slot_usage/#domain-and-range","text":"ClassDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_usage/#parents","text":"","title":"Parents"},{"location":"slot_usage/#children","text":"","title":"Children"},{"location":"slot_usage/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"slot_usage/#other-properties","text":"Comments: Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints","title":"Other properties"},{"location":"slots/","text":"Slot: slots list of slot names that are applicable to a class URI: linkml:slots Domain and Range ClassDefinition \u2192 0..* SlotDefinition Parents Children Used by ClassDefinition Other properties Comments: This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally,","title":"Slot: slots"},{"location":"slots/#slot-slots","text":"list of slot names that are applicable to a class URI: linkml:slots","title":"Slot: slots"},{"location":"slots/#domain-and-range","text":"ClassDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slots/#parents","text":"","title":"Parents"},{"location":"slots/#children","text":"","title":"Children"},{"location":"slots/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"slots/#other-properties","text":"Comments: This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally,","title":"Other properties"},{"location":"source_file/","text":"Slot: source_file name, uri or description of the source of the schema URI: linkml:source_file Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: source_file"},{"location":"source_file/#slot-source_file","text":"name, uri or description of the source of the schema URI: linkml:source_file","title":"Slot: source_file"},{"location":"source_file/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"source_file/#parents","text":"","title":"Parents"},{"location":"source_file/#children","text":"","title":"Children"},{"location":"source_file/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"source_file/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"source_file_date/","text":"Slot: source_file_date modification date of the source of the schema URI: linkml:source_file_date Domain and Range SchemaDefinition \u2192 0..1 Datetime Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: source_file_date"},{"location":"source_file_date/#slot-source_file_date","text":"modification date of the source of the schema URI: linkml:source_file_date","title":"Slot: source_file_date"},{"location":"source_file_date/#domain-and-range","text":"SchemaDefinition \u2192 0..1 Datetime","title":"Domain and Range"},{"location":"source_file_date/#parents","text":"","title":"Parents"},{"location":"source_file_date/#children","text":"","title":"Children"},{"location":"source_file_date/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"source_file_date/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"source_file_size/","text":"Slot: source_file_size size in bytes of the source of the schema URI: linkml:source_file_size Domain and Range SchemaDefinition \u2192 0..1 Integer Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: source_file_size"},{"location":"source_file_size/#slot-source_file_size","text":"size in bytes of the source of the schema URI: linkml:source_file_size","title":"Slot: source_file_size"},{"location":"source_file_size/#domain-and-range","text":"SchemaDefinition \u2192 0..1 Integer","title":"Domain and Range"},{"location":"source_file_size/#parents","text":"","title":"Parents"},{"location":"source_file_size/#children","text":"","title":"Children"},{"location":"source_file_size/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"source_file_size/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"status/","text":"Slot: status status of the element URI: linkml:status Domain and Range Element \u2192 0..1 Uriorcurie Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Mappings: bibo:status Examples: Example(value='bibo:draft', description=None)","title":"Slot: status"},{"location":"status/#slot-status","text":"status of the element URI: linkml:status","title":"Slot: status"},{"location":"status/#domain-and-range","text":"Element \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"status/#parents","text":"","title":"Parents"},{"location":"status/#children","text":"","title":"Children"},{"location":"status/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"status/#other-properties","text":"Mappings: bibo:status Examples: Example(value='bibo:draft', description=None)","title":"Other properties"},{"location":"string_serialization/","text":"Slot: string_serialization Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization Domain and Range Definition \u2192 0..1 String Parents Children Used by ClassDefinition Definition SlotDefinition Other properties See also: https://github.com/linkml/issues/128","title":"Slot: string_serialization"},{"location":"string_serialization/#slot-string_serialization","text":"Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization","title":"Slot: string_serialization"},{"location":"string_serialization/#domain-and-range","text":"Definition \u2192 0..1 String","title":"Domain and Range"},{"location":"string_serialization/#parents","text":"","title":"Parents"},{"location":"string_serialization/#children","text":"","title":"Children"},{"location":"string_serialization/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"string_serialization/#other-properties","text":"See also: https://github.com/linkml/issues/128","title":"Other properties"},{"location":"subclass_of/","text":"Slot: subclass_of rdfs:subClassOf to be emitted in OWL generation URI: linkml:subclass_of Domain and Range ClassDefinition \u2192 0..1 Uriorcurie Parents Children Used by ClassDefinition Other properties Mappings: rdfs:subClassOf","title":"Slot: subclass_of"},{"location":"subclass_of/#slot-subclass_of","text":"rdfs:subClassOf to be emitted in OWL generation URI: linkml:subclass_of","title":"Slot: subclass_of"},{"location":"subclass_of/#domain-and-range","text":"ClassDefinition \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"subclass_of/#parents","text":"","title":"Parents"},{"location":"subclass_of/#children","text":"","title":"Children"},{"location":"subclass_of/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"subclass_of/#other-properties","text":"Mappings: rdfs:subClassOf","title":"Other properties"},{"location":"subproperty_of/","text":"Slot: subproperty_of Ontology property which this slot is a subproperty of URI: linkml:subproperty_of Domain and Range SlotDefinition \u2192 0..1 SlotDefinition Parents Children Used by SlotDefinition Other properties Mappings: rdfs:subPropertyOf","title":"Slot: subproperty_of"},{"location":"subproperty_of/#slot-subproperty_of","text":"Ontology property which this slot is a subproperty of URI: linkml:subproperty_of","title":"Slot: subproperty_of"},{"location":"subproperty_of/#domain-and-range","text":"SlotDefinition \u2192 0..1 SlotDefinition","title":"Domain and Range"},{"location":"subproperty_of/#parents","text":"","title":"Parents"},{"location":"subproperty_of/#children","text":"","title":"Children"},{"location":"subproperty_of/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"subproperty_of/#other-properties","text":"Mappings: rdfs:subPropertyOf","title":"Other properties"},{"location":"subsets/","text":"Slot: subsets list of subsets referenced in this model URI: linkml:subsets Domain and Range SchemaDefinition \u2192 0..* SubsetDefinition Parents Children Used by SchemaDefinition","title":"Slot: subsets"},{"location":"subsets/#slot-subsets","text":"list of subsets referenced in this model URI: linkml:subsets","title":"Slot: subsets"},{"location":"subsets/#domain-and-range","text":"SchemaDefinition \u2192 0..* SubsetDefinition","title":"Domain and Range"},{"location":"subsets/#parents","text":"","title":"Parents"},{"location":"subsets/#children","text":"","title":"Children"},{"location":"subsets/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"symmetric/","text":"Slot: symmetric True means that any instance of d s r implies that there is also an instance of r s d URI: linkml:symmetric Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: symmetric"},{"location":"symmetric/#slot-symmetric","text":"True means that any instance of d s r implies that there is also an instance of r s d URI: linkml:symmetric","title":"Slot: symmetric"},{"location":"symmetric/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"symmetric/#parents","text":"","title":"Parents"},{"location":"symmetric/#children","text":"","title":"Children"},{"location":"symmetric/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"text/","text":"Slot: text URI: linkml:text Domain and Range PermissibleValue \u2192 1..1 String Parents Children Used by PermissibleValue","title":"Slot: text"},{"location":"text/#slot-text","text":"URI: linkml:text","title":"Slot: text"},{"location":"text/#domain-and-range","text":"PermissibleValue \u2192 1..1 String","title":"Domain and Range"},{"location":"text/#parents","text":"","title":"Parents"},{"location":"text/#children","text":"","title":"Children"},{"location":"text/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"title/","text":"Slot: title the official title of the schema URI: linkml:title Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties Mappings: dcterms:title In Subsets: owl","title":"Slot: title"},{"location":"title/#slot-title","text":"the official title of the schema URI: linkml:title","title":"Slot: title"},{"location":"title/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"title/#parents","text":"","title":"Parents"},{"location":"title/#children","text":"","title":"Children"},{"location":"title/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"title/#other-properties","text":"Mappings: dcterms:title In Subsets: owl","title":"Other properties"},{"location":"todos/","text":"Slot: todos Outstanding issue that needs resolution URI: linkml:todos Domain and Range Element \u2192 0..* String Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Slot: todos"},{"location":"todos/#slot-todos","text":"Outstanding issue that needs resolution URI: linkml:todos","title":"Slot: todos"},{"location":"todos/#domain-and-range","text":"Element \u2192 0..* String","title":"Domain and Range"},{"location":"todos/#parents","text":"","title":"Parents"},{"location":"todos/#children","text":"","title":"Children"},{"location":"todos/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"tree_root/","text":"Slot: tree_root indicator that this is the root class in tree structures URI: linkml:tree_root Domain and Range ClassDefinition \u2192 0..1 Boolean Parents Children Used by ClassDefinition","title":"Slot: tree_root"},{"location":"tree_root/#slot-tree_root","text":"indicator that this is the root class in tree structures URI: linkml:tree_root","title":"Slot: tree_root"},{"location":"tree_root/#domain-and-range","text":"ClassDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"tree_root/#parents","text":"","title":"Parents"},{"location":"tree_root/#children","text":"","title":"Children"},{"location":"tree_root/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"type_uri/","text":"Slot: uri The uri that defines the possible values for the type definition URI: linkml:type_uri Domain and Range TypeDefinition \u2192 0..1 Uriorcurie Parents Children Used by TypeDefinition Other properties Comments: uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) every root type must have a type uri","title":"Slot: uri"},{"location":"type_uri/#slot-uri","text":"The uri that defines the possible values for the type definition URI: linkml:type_uri","title":"Slot: uri"},{"location":"type_uri/#domain-and-range","text":"TypeDefinition \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"type_uri/#parents","text":"","title":"Parents"},{"location":"type_uri/#children","text":"","title":"Children"},{"location":"type_uri/#used-by","text":"TypeDefinition","title":"Used by"},{"location":"type_uri/#other-properties","text":"Comments: uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) every root type must have a type uri","title":"Other properties"},{"location":"typeof/","text":"Slot: typeof Names a parent type URI: linkml:typeof Domain and Range TypeDefinition \u2192 0..1 TypeDefinition Parents Children Used by TypeDefinition Other properties Comments: the target type definition of the typeof slot is referred to as the \"parent type\" the type definition containing the typeof slot is referred to as the \"child type\" type definitions without a typeof slot are referred to as a \"root type\"","title":"Slot: typeof"},{"location":"typeof/#slot-typeof","text":"Names a parent type URI: linkml:typeof","title":"Slot: typeof"},{"location":"typeof/#domain-and-range","text":"TypeDefinition \u2192 0..1 TypeDefinition","title":"Domain and Range"},{"location":"typeof/#parents","text":"","title":"Parents"},{"location":"typeof/#children","text":"","title":"Children"},{"location":"typeof/#used-by","text":"TypeDefinition","title":"Used by"},{"location":"typeof/#other-properties","text":"Comments: the target type definition of the typeof slot is referred to as the \"parent type\" the type definition containing the typeof slot is referred to as the \"child type\" type definitions without a typeof slot are referred to as a \"root type\"","title":"Other properties"},{"location":"types/","text":"Slot: types data types used in the model URI: linkml:types Domain and Range SchemaDefinition \u2192 0..* TypeDefinition Parents Children Used by SchemaDefinition","title":"Slot: types"},{"location":"types/#slot-types","text":"data types used in the model URI: linkml:types","title":"Slot: types"},{"location":"types/#domain-and-range","text":"SchemaDefinition \u2192 0..* TypeDefinition","title":"Domain and Range"},{"location":"types/#parents","text":"","title":"Parents"},{"location":"types/#children","text":"","title":"Children"},{"location":"types/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"union_of/","text":"Slot: union_of indicates that the domain class consists exactly of the members of the classes in the range URI: linkml:union_of Domain and Range ClassDefinition \u2192 0..* ClassDefinition Parents Children Used by ClassDefinition","title":"Slot: union_of"},{"location":"union_of/#slot-union_of","text":"indicates that the domain class consists exactly of the members of the classes in the range URI: linkml:union_of","title":"Slot: union_of"},{"location":"union_of/#domain-and-range","text":"ClassDefinition \u2192 0..* ClassDefinition","title":"Domain and Range"},{"location":"union_of/#parents","text":"","title":"Parents"},{"location":"union_of/#children","text":"","title":"Children"},{"location":"union_of/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"unique_key_slots/","text":"Slot: unique_key_slots list of slot names that form a key URI: linkml:unique_key_slots Domain and Range UniqueKey \u2192 1..* SlotDefinition Parents Children Used by UniqueKey","title":"Slot: unique_key_slots"},{"location":"unique_key_slots/#slot-unique_key_slots","text":"list of slot names that form a key URI: linkml:unique_key_slots","title":"Slot: unique_key_slots"},{"location":"unique_key_slots/#domain-and-range","text":"UniqueKey \u2192 1..* SlotDefinition","title":"Domain and Range"},{"location":"unique_key_slots/#parents","text":"","title":"Parents"},{"location":"unique_key_slots/#children","text":"","title":"Children"},{"location":"unique_key_slots/#used-by","text":"UniqueKey","title":"Used by"},{"location":"unique_keys/","text":"Slot: unique_keys Set of unique keys for this slot URI: linkml:unique_keys Domain and Range ClassDefinition \u2192 0..* UniqueKey Parents Children Used by Other properties Mappings: owl:hasKey","title":"Slot: unique_keys"},{"location":"unique_keys/#slot-unique_keys","text":"Set of unique keys for this slot URI: linkml:unique_keys","title":"Slot: unique_keys"},{"location":"unique_keys/#domain-and-range","text":"ClassDefinition \u2192 0..* UniqueKey","title":"Domain and Range"},{"location":"unique_keys/#parents","text":"","title":"Parents"},{"location":"unique_keys/#children","text":"","title":"Children"},{"location":"unique_keys/#used-by","text":"","title":"Used by"},{"location":"unique_keys/#other-properties","text":"Mappings: owl:hasKey","title":"Other properties"},{"location":"usage_slot_name/","text":"Slot: usage_slot_name The name of the slot referenced in the slot_usage URI: linkml:usage_slot_name Domain and Range SlotDefinition \u2192 0..1 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base class for definitions Referenced by Class ClassDefinition class_definition\u279eapply_to 0..* ClassDefinition ClassDefinition class_definition\u279eis_a 0..1 ClassDefinition ClassDefinition class_definition\u279emixins 0..* ClassDefinition SchemaDefinition classes 0..* ClassDefinition SlotDefinition domain 0..1 ClassDefinition SlotDefinition domain_of 0..* ClassDefinition ClassDefinition union_of 0..* ClassDefinition Attributes Own slots 0..* Description: list of slot names that are applicable to a class Range: SlotDefinition slot_usage 0..* Description: the redefinition of a slot in the context of the containing class definition. Range: SlotDefinition attributes 0..* Description: Inline definition of slots Range: SlotDefinition class_uri 0..1 Description: URI of the class in an RDF environment Range: Uriorcurie subclass_of 0..1 Description: rdfs:subClassOf to be emitted in OWL generation Range: Uriorcurie union_of 0..* Description: indicates that the domain class consists exactly of the members of the classes in the range Range: ClassDefinition defining_slots 0..* Description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom Range: SlotDefinition tree_root 0..1 Description: indicator that this is the root class in tree structures Range: Boolean class_definition\u279eis_a 0..1 Range: ClassDefinition class_definition\u279emixins 0..* Range: ClassDefinition class_definition\u279eapply_to 0..* Range: ClassDefinition Inherited from definition: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String Other properties Aliases: table record template message observation Close Mappings: owl:Class","title":"Class: class_definition"},{"location":"ClassDefinition/#class-class_definition","text":"the definition of a class or interface URI: linkml:ClassDefinition","title":"Class: class_definition"},{"location":"ClassDefinition/#parents","text":"is_a: Definition - base class for definitions","title":"Parents"},{"location":"ClassDefinition/#referenced-by-class","text":"ClassDefinition class_definition\u279eapply_to 0..* ClassDefinition ClassDefinition class_definition\u279eis_a 0..1 ClassDefinition ClassDefinition class_definition\u279emixins 0..* ClassDefinition SchemaDefinition classes 0..* ClassDefinition SlotDefinition domain 0..1 ClassDefinition SlotDefinition domain_of 0..* ClassDefinition ClassDefinition union_of 0..* ClassDefinition","title":"Referenced by Class"},{"location":"ClassDefinition/#attributes","text":"","title":"Attributes"},{"location":"ClassDefinition/#own","text":"slots 0..* Description: list of slot names that are applicable to a class Range: SlotDefinition slot_usage 0..* Description: the redefinition of a slot in the context of the containing class definition. Range: SlotDefinition attributes 0..* Description: Inline definition of slots Range: SlotDefinition class_uri 0..1 Description: URI of the class in an RDF environment Range: Uriorcurie subclass_of 0..1 Description: rdfs:subClassOf to be emitted in OWL generation Range: Uriorcurie union_of 0..* Description: indicates that the domain class consists exactly of the members of the classes in the range Range: ClassDefinition defining_slots 0..* Description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom Range: SlotDefinition tree_root 0..1 Description: indicator that this is the root class in tree structures Range: Boolean class_definition\u279eis_a 0..1 Range: ClassDefinition class_definition\u279emixins 0..* Range: ClassDefinition class_definition\u279eapply_to 0..* Range: ClassDefinition","title":"Own"},{"location":"ClassDefinition/#inherited-from-definition","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String","title":"Inherited from definition:"},{"location":"ClassDefinition/#other-properties","text":"Aliases: table record template message observation Close Mappings: owl:Class","title":"Other properties"},{"location":"CommonMetadata/","text":"Class: common_metadata Generic metadata shared across definitions URI: linkml:CommonMetadata Mixin for Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI Referenced by Class Attributes Own description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) alt_descriptions 0..* Range: AltDescription deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String todos 0..* Description: Outstanding issue that needs resolution Range: String notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl) comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl) examples 0..* Description: example usages of an element Range: Example in subsets: (owl) in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition from_schema 0..1 Description: id of the schema that defined the element Range: Uri imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl) deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie","title":"Class: common_metadata"},{"location":"CommonMetadata/#class-common_metadata","text":"Generic metadata shared across definitions URI: linkml:CommonMetadata","title":"Class: common_metadata"},{"location":"CommonMetadata/#mixin-for","text":"Element (mixin) - a named element in the model PermissibleValue (mixin) - a permissible value, accompanied by intended text and an optional mapping to a concept URI","title":"Mixin for"},{"location":"CommonMetadata/#referenced-by-class","text":"","title":"Referenced by Class"},{"location":"CommonMetadata/#attributes","text":"","title":"Attributes"},{"location":"CommonMetadata/#own","text":"description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) alt_descriptions 0..* Range: AltDescription deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String todos 0..* Description: Outstanding issue that needs resolution Range: String notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl) comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl) examples 0..* Description: example usages of an element Range: Example in subsets: (owl) in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition from_schema 0..1 Description: id of the schema that defined the element Range: Uri imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl) deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie","title":"Own"},{"location":"Date/","text":"Type: date a date (year, month and day) in an idealized calendar URI: linkml:Date Root (builtin) type XSDDate Representation str","title":"Type: date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: linkml:Date Root (builtin) type XSDDate Representation str","title":"Type: date"},{"location":"Datetime/","text":"Type: datetime The combination of a date and time URI: linkml:Datetime Root (builtin) type XSDDateTime Representation str","title":"Type: datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: linkml:Datetime Root (builtin) type XSDDateTime Representation str","title":"Type: datetime"},{"location":"Decimal/","text":"Type: decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: linkml:Decimal Root (builtin) type Decimal","title":"Type: decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: linkml:Decimal Root (builtin) type Decimal","title":"Type: decimal"},{"location":"Definition/","text":"Class: definition base class for definitions URI: linkml:Definition Parents is_a: Element - a named element in the model Children ClassDefinition - the definition of a class or interface SlotDefinition - the definition of a property or a slot Referenced by Class Definition apply_to 0..* Definition Definition is_a 0..1 Definition Definition mixins 0..* Definition SlotDefinition owner 0..1 Definition Attributes Own is_a 0..1 Description: specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded Range: Definition abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean mixins 0..* Description: List of definitions to be mixed in. Targets may be any definition of the same type Range: Definition apply_to 0..* Description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. Range: Definition values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String Inherited from element: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie Other properties See also: https://en.wikipedia.org/wiki/Data_element_definition","title":"Class: definition"},{"location":"Definition/#class-definition","text":"base class for definitions URI: linkml:Definition","title":"Class: definition"},{"location":"Definition/#parents","text":"is_a: Element - a named element in the model","title":"Parents"},{"location":"Definition/#children","text":"ClassDefinition - the definition of a class or interface SlotDefinition - the definition of a property or a slot","title":"Children"},{"location":"Definition/#referenced-by-class","text":"Definition apply_to 0..* Definition Definition is_a 0..1 Definition Definition mixins 0..* Definition SlotDefinition owner 0..1 Definition","title":"Referenced by Class"},{"location":"Definition/#attributes","text":"","title":"Attributes"},{"location":"Definition/#own","text":"is_a 0..1 Description: specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded Range: Definition abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean mixins 0..* Description: List of definitions to be mixed in. Targets may be any definition of the same type Range: Definition apply_to 0..* Description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. Range: Definition values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String","title":"Own"},{"location":"Definition/#inherited-from-element","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"Definition/#other-properties","text":"See also: https://en.wikipedia.org/wiki/Data_element_definition","title":"Other properties"},{"location":"Double/","text":"Type: double A real number that conforms to the xsd:double specification URI: linkml:Double Root (builtin) type float","title":"Type: double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: linkml:Double Root (builtin) type float","title":"Type: double"},{"location":"Element/","text":"Class: element a named element in the model URI: linkml:Element Uses Mixin mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations mixin: CommonMetadata - Generic metadata shared across definitions Children Definition - base class for definitions EnumDefinition - List of values that constrain the range of a slot SchemaDefinition - a collection of subset, type, slot and class definitions SubsetDefinition - the name and description of a subset TypeDefinition - A data type definition. Referenced by Class SlotDefinition range 0..1 Element Attributes Own name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie Mixed in from extensible: extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension Mixed in from annotatable: annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation Mixed in from common_metadata: description 0..1 Description: a description of the element's purpose and use Range: String in subsets: (owl) Mixed in from common_metadata: alt_descriptions 0..* Range: AltDescription Mixed in from common_metadata: deprecated 0..1 Description: Description of why and when this element will no longer be used Range: String Mixed in from common_metadata: todos 0..* Description: Outstanding issue that needs resolution Range: String Mixed in from common_metadata: notes 0..* Description: editorial notes about an element intended for internal consumption Range: String in subsets: (owl) Mixed in from common_metadata: comments 0..* Description: notes and comments about an element intended for external consumption Range: String in subsets: (owl) Mixed in from common_metadata: examples 0..* Description: example usages of an element Range: Example in subsets: (owl) Mixed in from common_metadata: in_subset 0..* Description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) Range: SubsetDefinition Mixed in from common_metadata: from_schema 0..1 Description: id of the schema that defined the element Range: Uri Mixed in from common_metadata: imported_from 0..1 Description: the imports entry that this element was derived from. Empty means primary source Range: String Mixed in from common_metadata: see_also 0..* Description: a reference Range: Uriorcurie in subsets: (owl) Mixed in from common_metadata: deprecated element has exact replacement 0..1 Description: When an element is deprecated, it can be automatically replaced by this uri or curie Range: Uriorcurie Mixed in from common_metadata: deprecated element has possible replacement 0..1 Description: When an element is deprecated, it can be potentially replaced by this uri or curie Range: Uriorcurie Other properties See also: https://en.wikipedia.org/wiki/Data_element","title":"Class: element"},{"location":"Element/#class-element","text":"a named element in the model URI: linkml:Element","title":"Class: element"},{"location":"Element/#uses-mixin","text":"mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations mixin: CommonMetadata - Generic metadata shared across definitions","title":"Uses Mixin"},{"location":"Element/#children","text":"Definition - base class for definitions EnumDefinition - List of values that constrain the range of a slot SchemaDefinition - a collection of subset, type, slot and class definitions SubsetDefinition - the name and description of a subset TypeDefinition - A data type definition.","title":"Children"},{"location":"Element/#referenced-by-class","text":"SlotDefinition range 0..1 Element","title":"Referenced by Class"},{"location":"Element/#attributes","text":"","title":"Attributes"},{"location":"Element/#own","text":"name 1..1 Description: the unique name of the element within the context of the schema. 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All prefixes in this list are added to the prefix sections of the target models. Range: Ncname default_curi_maps 0..* Description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables Range: String default_prefix 0..1 Description: default and base prefix -- used for ':' identifiers, @base and @vocab Range: String default_range 0..1 Description: default slot range to be used if range element is omitted from a slot definition Range: TypeDefinition subsets 0..* Description: list of subsets referenced in this model Range: SubsetDefinition types 0..* Description: data types used in the model Range: TypeDefinition enums 0..* Description: enumerated ranges Range: EnumDefinition schema_definition\u279eslots 0..* Description: slot definitions Range: SlotDefinition classes 0..* Description: class definitions Range: ClassDefinition metamodel_version 0..1 Description: Version of the metamodel used to load the schema Range: String in subsets: (owl) source_file 0..1 Description: name, uri or description of the source of the schema Range: String in subsets: (owl) source_file_date 0..1 Description: modification date of the source of the schema Range: Datetime in subsets: (owl) source_file_size 0..1 Description: size in bytes of the source of the schema Range: Integer in subsets: (owl) generation_date 0..1 Description: date and time that the schema was loaded/generated Range: Datetime in subsets: (owl) schema_definition\u279ename 1..1 Range: Ncname","title":"Own"},{"location":"SchemaDefinition/#inherited-from-element","text":"title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"SchemaDefinition/#other-properties","text":"Aliases: data dictionary See also: https://en.wikipedia.org/wiki/Data_dictionary","title":"Other properties"},{"location":"SlotDefinition/","text":"Class: slot_definition the definition of a property or a slot URI: linkml:SlotDefinition Parents is_a: Definition - base class for definitions Referenced by Class ClassDefinition attributes 0..* SlotDefinition ClassDefinition defining_slots 0..* SlotDefinition SlotDefinition inverse 0..1 SlotDefinition SlotDefinition slot_definition\u279eapply_to 0..* SlotDefinition SlotDefinition slot_definition\u279eis_a 0..1 SlotDefinition SlotDefinition slot_definition\u279emixins 0..* SlotDefinition SchemaDefinition schema_definition\u279eslots 0..* SlotDefinition ClassDefinition slot_usage 0..* SlotDefinition ClassDefinition slots 0..* SlotDefinition SlotDefinition subproperty_of 0..1 SlotDefinition UniqueKey unique_key_slots 1..* SlotDefinition Attributes Own singular_name 0..1 Description: a name that is used in the singular form Range: String domain 0..1 Description: defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 * Range: [ClassDefinition](ClassDefinition.md) range 0..1 Description: defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 * Range: [Element](Element.md) slot_uri 0..1 Description: predicate of this slot for semantic web application Range: Uriorcurie multivalued 0..1 Description: true means that slot can have more than one value Range: Boolean inherited 0..1 Description: true means that the value of a slot is inherited by subclasses Range: Boolean readonly 0..1 Description: If present, slot is read only. Text explains why Range: String ifabsent 0..1 Description: function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: [Tt]rue -- boolean True [Ff]alse -- boolean False int(value) -- integer value str(value) -- string value default_range -- schema default range bnode -- blank node identifier slot_uri -- URI for the slot class_curie -- CURIE for the containing class class_uri -- URI for the containing class Range: String required 0..1 Description: true means that the slot must be present in the loaded definition Range: Boolean recommended 0..1 Description: true means that the slot should be present in the loaded definition, but this is not required Range: Boolean inlined 0..1 Description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. Range: Boolean inlined_as_list 0..1 Description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. Range: Boolean key 0..1 Description: True means that the key slot(s) uniquely identify the container. Range: Boolean identifier 0..1 Description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container Range: Boolean designates_type 0..1 Description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition Range: Boolean alias 0..1 Description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. Range: String owner 0..1 Description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot Range: Definition domain_of 0..* Description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context Range: ClassDefinition subproperty_of 0..1 Description: Ontology property which this slot is a subproperty of Range: SlotDefinition symmetric 0..1 Description: True means that any instance of d s r implies that there is also an instance of r s d Range: Boolean inverse 0..1 Description: indicates that any instance of d s r implies that there is also an instance of r s' d Range: SlotDefinition is_class_field 0..1 Description: indicates that any instance, i, the domain of this slot will include an assert of i s range Range: Boolean role 0..1 Description: the role played by the slot range Range: String is_usage_slot 0..1 Description: True means that this slot was defined in a slot_usage situation Range: Boolean usage_slot_name 0..1 Description: The name of the slot referenced in the slot_usage Range: String minimum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or higher than this Range: Integer maximum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or lowe than this Range: Integer pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String slot_definition\u279eis_a 0..1 Range: SlotDefinition slot_definition\u279emixins 0..* Range: SlotDefinition slot_definition\u279eapply_to 0..* Range: SlotDefinition Inherited from definition: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String Other properties Aliases: slot field property attribute column variable Close Mappings: rdf:Property","title":"Class: slot_definition"},{"location":"SlotDefinition/#class-slot_definition","text":"the definition of a property or a slot URI: linkml:SlotDefinition","title":"Class: slot_definition"},{"location":"SlotDefinition/#parents","text":"is_a: Definition - base class for definitions","title":"Parents"},{"location":"SlotDefinition/#referenced-by-class","text":"ClassDefinition attributes 0..* SlotDefinition ClassDefinition defining_slots 0..* SlotDefinition SlotDefinition inverse 0..1 SlotDefinition SlotDefinition slot_definition\u279eapply_to 0..* SlotDefinition SlotDefinition slot_definition\u279eis_a 0..1 SlotDefinition SlotDefinition slot_definition\u279emixins 0..* SlotDefinition SchemaDefinition schema_definition\u279eslots 0..* SlotDefinition ClassDefinition slot_usage 0..* SlotDefinition ClassDefinition slots 0..* SlotDefinition SlotDefinition subproperty_of 0..1 SlotDefinition UniqueKey unique_key_slots 1..* SlotDefinition","title":"Referenced by Class"},{"location":"SlotDefinition/#attributes","text":"","title":"Attributes"},{"location":"SlotDefinition/#own","text":"singular_name 0..1 Description: a name that is used in the singular form Range: String domain 0..1 Description: defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 * Range: [ClassDefinition](ClassDefinition.md) range 0..1 Description: defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 * Range: [Element](Element.md) slot_uri 0..1 Description: predicate of this slot for semantic web application Range: Uriorcurie multivalued 0..1 Description: true means that slot can have more than one value Range: Boolean inherited 0..1 Description: true means that the value of a slot is inherited by subclasses Range: Boolean readonly 0..1 Description: If present, slot is read only. Text explains why Range: String ifabsent 0..1 Description: function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: [Tt]rue -- boolean True [Ff]alse -- boolean False int(value) -- integer value str(value) -- string value default_range -- schema default range bnode -- blank node identifier slot_uri -- URI for the slot class_curie -- CURIE for the containing class class_uri -- URI for the containing class Range: String required 0..1 Description: true means that the slot must be present in the loaded definition Range: Boolean recommended 0..1 Description: true means that the slot should be present in the loaded definition, but this is not required Range: Boolean inlined 0..1 Description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. Range: Boolean inlined_as_list 0..1 Description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. Range: Boolean key 0..1 Description: True means that the key slot(s) uniquely identify the container. Range: Boolean identifier 0..1 Description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container Range: Boolean designates_type 0..1 Description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition Range: Boolean alias 0..1 Description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. Range: String owner 0..1 Description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot Range: Definition domain_of 0..* Description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context Range: ClassDefinition subproperty_of 0..1 Description: Ontology property which this slot is a subproperty of Range: SlotDefinition symmetric 0..1 Description: True means that any instance of d s r implies that there is also an instance of r s d Range: Boolean inverse 0..1 Description: indicates that any instance of d s r implies that there is also an instance of r s' d Range: SlotDefinition is_class_field 0..1 Description: indicates that any instance, i, the domain of this slot will include an assert of i s range Range: Boolean role 0..1 Description: the role played by the slot range Range: String is_usage_slot 0..1 Description: True means that this slot was defined in a slot_usage situation Range: Boolean usage_slot_name 0..1 Description: The name of the slot referenced in the slot_usage Range: String minimum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or higher than this Range: Integer maximum_value 0..1 Description: for slots with ranges of type number, the value must be equal to or lowe than this Range: Integer pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String slot_definition\u279eis_a 0..1 Range: SlotDefinition slot_definition\u279emixins 0..* Range: SlotDefinition slot_definition\u279eapply_to 0..* Range: SlotDefinition","title":"Own"},{"location":"SlotDefinition/#inherited-from-definition","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie abstract 0..1 Description: an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. Range: Boolean mixin 0..1 Description: this slot or class can only be used as a mixin. Range: Boolean values_from 0..* Description: the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot Range: Uriorcurie created_by 0..1 Description: agent that created the element Range: Uriorcurie created_on 0..1 Description: time at which the element was created Range: Datetime last_updated_on 0..1 Description: time at which the element was last updated Range: Datetime modified_by 0..1 Description: agent that modified the element Range: Uriorcurie status 0..1 Description: status of the element Range: Uriorcurie Example: bibo:draft None string_serialization 0..1 Description: Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm Range: String","title":"Inherited from definition:"},{"location":"SlotDefinition/#other-properties","text":"Aliases: slot field property attribute column variable Close Mappings: rdf:Property","title":"Other properties"},{"location":"String/","text":"Type: string A character string URI: linkml:String Root (builtin) type str","title":"Type: string"},{"location":"String/#type-string","text":"A character string URI: linkml:String Root (builtin) type str","title":"Type: string"},{"location":"SubsetDefinition/","text":"Class: subset_definition the name and description of a subset URI: linkml:SubsetDefinition Parents is_a: Element - a named element in the model Referenced by Class Element in_subset 0..* SubsetDefinition SchemaDefinition subsets 0..* SubsetDefinition Attributes Inherited from element: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Class: subset_definition"},{"location":"SubsetDefinition/#class-subset_definition","text":"the name and description of a subset URI: linkml:SubsetDefinition","title":"Class: subset_definition"},{"location":"SubsetDefinition/#parents","text":"is_a: Element - a named element in the model","title":"Parents"},{"location":"SubsetDefinition/#referenced-by-class","text":"Element in_subset 0..* SubsetDefinition SchemaDefinition subsets 0..* SubsetDefinition","title":"Referenced by Class"},{"location":"SubsetDefinition/#attributes","text":"","title":"Attributes"},{"location":"SubsetDefinition/#inherited-from-element","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"Time/","text":"Type: time A time object represents a (local) time of day, independent of any particular day URI: linkml:Time Root (builtin) type XSDTime Representation str","title":"Type: time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: linkml:Time Root (builtin) type XSDTime Representation str","title":"Type: time"},{"location":"TypeDefinition/","text":"Class: type_definition A data type definition. URI: linkml:TypeDefinition Parents is_a: Element - a named element in the model Referenced by Class SchemaDefinition default_range 0..1 TypeDefinition TypeDefinition typeof 0..1 TypeDefinition SchemaDefinition types 0..* TypeDefinition Attributes Own typeof 0..1 Description: Names a parent type Range: TypeDefinition base 0..1 Description: python base type that implements this type definition Range: String type_definition\u279euri 0..1 Description: The uri that defines the possible values for the type definition Range: Uriorcurie repr 0..1 Description: the name of the python object that implements this type definition Range: String pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String Inherited from element: name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Class: type_definition"},{"location":"TypeDefinition/#class-type_definition","text":"A data type definition. URI: linkml:TypeDefinition","title":"Class: type_definition"},{"location":"TypeDefinition/#parents","text":"is_a: Element - a named element in the model","title":"Parents"},{"location":"TypeDefinition/#referenced-by-class","text":"SchemaDefinition default_range 0..1 TypeDefinition TypeDefinition typeof 0..1 TypeDefinition SchemaDefinition types 0..* TypeDefinition","title":"Referenced by Class"},{"location":"TypeDefinition/#attributes","text":"","title":"Attributes"},{"location":"TypeDefinition/#own","text":"typeof 0..1 Description: Names a parent type Range: TypeDefinition base 0..1 Description: python base type that implements this type definition Range: String type_definition\u279euri 0..1 Description: The uri that defines the possible values for the type definition Range: Uriorcurie repr 0..1 Description: the name of the python object that implements this type definition Range: String pattern 0..1 Description: the string value of the slot must conform to this regular expression Range: String","title":"Own"},{"location":"TypeDefinition/#inherited-from-element","text":"name 1..1 Description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. Range: String in subsets: (owl) title 0..1 Description: the official title of the element Range: String in subsets: (owl) id_prefixes 0..* Description: the identifier of this class or slot must begin with the URIs referenced by this prefix Range: Ncname definition_uri 0..1 Description: the \"native\" URI of the element Range: Uriorcurie aliases 0..* Range: String local_names 0..* Range: LocalName mappings 0..* Description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. Range: Uriorcurie exact mappings 0..* Description: A list of terms from different schemas or terminology systems that have identical meaning. Range: Uriorcurie close mappings 0..* Description: A list of terms from different schemas or terminology systems that have close meaning. Range: Uriorcurie related mappings 0..* Description: A list of terms from different schemas or terminology systems that have related meaning. Range: Uriorcurie narrow mappings 0..* Description: A list of terms from different schemas or terminology systems that have narrower meaning. Range: Uriorcurie broad mappings 0..* Description: A list of terms from different schemas or terminology systems that have broader meaning. Range: Uriorcurie","title":"Inherited from element:"},{"location":"UniqueKey/","text":"Class: unique_key a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey Uses Mixin mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations Referenced by Class ClassDefinition unique_keys 0..* UniqueKey Attributes Own unique_key_slots 1..* Description: list of slot names that form a key Range: SlotDefinition Mixed in from extensible: extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension Mixed in from annotatable: annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Class: unique_key"},{"location":"UniqueKey/#class-unique_key","text":"a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey","title":"Class: unique_key"},{"location":"UniqueKey/#uses-mixin","text":"mixin: Extensible - mixin for classes that support extension mixin: Annotatable - mixin for classes that support annotations","title":"Uses Mixin"},{"location":"UniqueKey/#referenced-by-class","text":"ClassDefinition unique_keys 0..* UniqueKey","title":"Referenced by Class"},{"location":"UniqueKey/#attributes","text":"","title":"Attributes"},{"location":"UniqueKey/#own","text":"unique_key_slots 1..* Description: list of slot names that form a key Range: SlotDefinition","title":"Own"},{"location":"UniqueKey/#mixed-in-from-extensible","text":"extensions 0..* Description: a tag/text tuple attached to an arbitrary element Range: Extension","title":"Mixed in from extensible:"},{"location":"UniqueKey/#mixed-in-from-annotatable","text":"annotations 0..* Description: a collection of tag/text tuples with the semantics of OWL Annotation Range: Annotation","title":"Mixed in from annotatable:"},{"location":"Uri/","text":"Type: uri a complete URI URI: linkml:Uri Root (builtin) type URI Representation str","title":"Type: uri"},{"location":"Uri/#type-uri","text":"a complete URI URI: linkml:Uri Root (builtin) type URI Representation str","title":"Type: uri"},{"location":"Uriorcurie/","text":"Type: uriorcurie a URI or a CURIE URI: linkml:Uriorcurie Root (builtin) type URIorCURIE Representation str","title":"Type: uriorcurie"},{"location":"Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: linkml:Uriorcurie Root (builtin) type URIorCURIE Representation str","title":"Type: uriorcurie"},{"location":"abstract/","text":"Slot: abstract an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. URI: linkml:abstract Domain and Range Definition \u2192 0..1 Boolean Parents Children Used by ClassDefinition Definition SlotDefinition","title":"Slot: abstract"},{"location":"abstract/#slot-abstract","text":"an abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated. URI: linkml:abstract","title":"Slot: abstract"},{"location":"abstract/#domain-and-range","text":"Definition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"abstract/#parents","text":"","title":"Parents"},{"location":"abstract/#children","text":"","title":"Children"},{"location":"abstract/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"alias/","text":"Slot: alias the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. URI: linkml:alias Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: alias"},{"location":"alias/#slot-alias","text":"the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. 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type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 URI: linkml:domain Domain and Range SlotDefinition \u2192 0..1 ClassDefinition Parents Children Used by SlotDefinition","title":"Slot: domain"},{"location":"domain/#slot-domain","text":"defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 URI: linkml:domain","title":"Slot: domain"},{"location":"domain/#domain-and-range","text":"SlotDefinition \u2192 0..1 ClassDefinition","title":"Domain and Range"},{"location":"domain/#parents","text":"","title":"Parents"},{"location":"domain/#children","text":"","title":"Children"},{"location":"domain/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"domain_of/","text":"Slot: domain_of the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context URI: linkml:domain_of Domain and Range SlotDefinition \u2192 0..* ClassDefinition Parents Children Used by SlotDefinition","title":"Slot: domain_of"},{"location":"domain_of/#slot-domain_of","text":"the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context URI: linkml:domain_of","title":"Slot: domain_of"},{"location":"domain_of/#domain-and-range","text":"SlotDefinition \u2192 0..* ClassDefinition","title":"Domain and Range"},{"location":"domain_of/#parents","text":"","title":"Parents"},{"location":"domain_of/#children","text":"","title":"Children"},{"location":"domain_of/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"emit_prefixes/","text":"Slot: emit_prefixes a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. URI: linkml:emit_prefixes Domain and Range SchemaDefinition \u2192 0..* Ncname Parents Children Used by SchemaDefinition","title":"Slot: emit_prefixes"},{"location":"emit_prefixes/#slot-emit_prefixes","text":"a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. URI: linkml:emit_prefixes","title":"Slot: emit_prefixes"},{"location":"emit_prefixes/#domain-and-range","text":"SchemaDefinition \u2192 0..* Ncname","title":"Domain and Range"},{"location":"emit_prefixes/#parents","text":"","title":"Parents"},{"location":"emit_prefixes/#children","text":"","title":"Children"},{"location":"emit_prefixes/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"enums/","text":"Slot: enums enumerated ranges URI: linkml:enums Domain and Range SchemaDefinition \u2192 0..* EnumDefinition Parents Children Used by SchemaDefinition","title":"Slot: enums"},{"location":"enums/#slot-enums","text":"enumerated ranges URI: linkml:enums","title":"Slot: enums"},{"location":"enums/#domain-and-range","text":"SchemaDefinition \u2192 0..* EnumDefinition","title":"Domain and Range"},{"location":"enums/#parents","text":"","title":"Parents"},{"location":"enums/#children","text":"","title":"Children"},{"location":"enums/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"exact_mappings/","text":"Slot: exact mappings A list of terms from different schemas or terminology systems that have identical meaning. URI: linkml:exact_mappings Domain and Range None \u2192 0..* Uriorcurie Parents is_a: mappings Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:exactMatch","title":"Slot: exact mappings"},{"location":"exact_mappings/#slot-exact-mappings","text":"A list of terms from different schemas or terminology systems that have identical meaning. URI: linkml:exact_mappings","title":"Slot: exact mappings"},{"location":"exact_mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"exact_mappings/#parents","text":"is_a: mappings","title":"Parents"},{"location":"exact_mappings/#children","text":"","title":"Children"},{"location":"exact_mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"exact_mappings/#other-properties","text":"Mappings: skos:exactMatch","title":"Other properties"},{"location":"examples/","text":"Slot: examples example usages of an element URI: linkml:examples Domain and Range Element \u2192 0..* Example Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties In Subsets: owl","title":"Slot: examples"},{"location":"examples/#slot-examples","text":"example usages of an element URI: linkml:examples","title":"Slot: examples"},{"location":"examples/#domain-and-range","text":"Element \u2192 0..* Example","title":"Domain and Range"},{"location":"examples/#parents","text":"","title":"Parents"},{"location":"examples/#children","text":"","title":"Children"},{"location":"examples/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"examples/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"extension_tag/","text":"Slot: tag a tag associated with an extension URI: linkml:extension_tag Domain and Range Extension \u2192 1..1 Uriorcurie Parents Children Used by Annotation Extension","title":"Slot: tag"},{"location":"extension_tag/#slot-tag","text":"a tag associated with an extension URI: linkml:extension_tag","title":"Slot: tag"},{"location":"extension_tag/#domain-and-range","text":"Extension \u2192 1..1 Uriorcurie","title":"Domain and Range"},{"location":"extension_tag/#parents","text":"","title":"Parents"},{"location":"extension_tag/#children","text":"","title":"Children"},{"location":"extension_tag/#used-by","text":"Annotation Extension","title":"Used by"},{"location":"extension_value/","text":"Slot: value the actual annotation URI: linkml:extension_value Domain and Range Extension \u2192 1..1 String Parents Children Used by Annotation Extension","title":"Slot: value"},{"location":"extension_value/#slot-value","text":"the actual annotation URI: linkml:extension_value","title":"Slot: value"},{"location":"extension_value/#domain-and-range","text":"Extension \u2192 1..1 String","title":"Domain and Range"},{"location":"extension_value/#parents","text":"","title":"Parents"},{"location":"extension_value/#children","text":"","title":"Children"},{"location":"extension_value/#used-by","text":"Annotation Extension","title":"Used by"},{"location":"extensions/","text":"Slot: extensions a tag/text tuple attached to an arbitrary element URI: linkml:extensions Domain and Range Extensible \u2192 0..* Extension Parents Children annotations Used by Annotation ClassDefinition Definition Element EnumDefinition Extensible Extension PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition UniqueKey","title":"Slot: extensions"},{"location":"extensions/#slot-extensions","text":"a tag/text tuple attached to an arbitrary element URI: linkml:extensions","title":"Slot: extensions"},{"location":"extensions/#domain-and-range","text":"Extensible \u2192 0..* Extension","title":"Domain and Range"},{"location":"extensions/#parents","text":"","title":"Parents"},{"location":"extensions/#children","text":"annotations","title":"Children"},{"location":"extensions/#used-by","text":"Annotation ClassDefinition Definition Element EnumDefinition Extensible Extension PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition UniqueKey","title":"Used by"},{"location":"from_schema/","text":"Slot: from_schema id of the schema that defined the element URI: linkml:from_schema Domain and Range Element \u2192 0..1 Uri Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:inScheme","title":"Slot: from_schema"},{"location":"from_schema/#slot-from_schema","text":"id of the schema that defined the element URI: linkml:from_schema","title":"Slot: from_schema"},{"location":"from_schema/#domain-and-range","text":"Element \u2192 0..1 Uri","title":"Domain and Range"},{"location":"from_schema/#parents","text":"","title":"Parents"},{"location":"from_schema/#children","text":"","title":"Children"},{"location":"from_schema/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"from_schema/#other-properties","text":"Mappings: skos:inScheme","title":"Other properties"},{"location":"generation_date/","text":"Slot: generation_date date and time that the schema was loaded/generated URI: linkml:generation_date Domain and Range SchemaDefinition \u2192 0..1 Datetime Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: generation_date"},{"location":"generation_date/#slot-generation_date","text":"date and time that the schema was loaded/generated URI: linkml:generation_date","title":"Slot: generation_date"},{"location":"generation_date/#domain-and-range","text":"SchemaDefinition \u2192 0..1 Datetime","title":"Domain and Range"},{"location":"generation_date/#parents","text":"","title":"Parents"},{"location":"generation_date/#children","text":"","title":"Children"},{"location":"generation_date/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"generation_date/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"home/","text":"Introduction about my_schema","title":"Home"},{"location":"home/#introduction","text":"about my_schema","title":"Introduction"},{"location":"id/","text":"Slot: id The official schema URI URI: linkml:id Domain and Range SchemaDefinition \u2192 1..1 Uri Parents Children Used by SchemaDefinition","title":"Slot: id"},{"location":"id/#slot-id","text":"The official schema URI URI: linkml:id","title":"Slot: id"},{"location":"id/#domain-and-range","text":"SchemaDefinition \u2192 1..1 Uri","title":"Domain and Range"},{"location":"id/#parents","text":"","title":"Parents"},{"location":"id/#children","text":"","title":"Children"},{"location":"id/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"id_prefixes/","text":"Slot: id_prefixes the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes Domain and Range Element \u2192 0..* Ncname Parents Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Comments: Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open) See also: https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28","title":"Slot: id_prefixes"},{"location":"id_prefixes/#slot-id_prefixes","text":"the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes","title":"Slot: id_prefixes"},{"location":"id_prefixes/#domain-and-range","text":"Element \u2192 0..* Ncname","title":"Domain and Range"},{"location":"id_prefixes/#parents","text":"","title":"Parents"},{"location":"id_prefixes/#children","text":"","title":"Children"},{"location":"id_prefixes/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"id_prefixes/#other-properties","text":"Comments: Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open) See also: https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28","title":"Other properties"},{"location":"identifier/","text":"Slot: identifier True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Aliases: primary key ID UID code Comments: identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both See also: https://en.wikipedia.org/wiki/Identifier","title":"Slot: identifier"},{"location":"identifier/#slot-identifier","text":"True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier","title":"Slot: identifier"},{"location":"identifier/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"identifier/#parents","text":"","title":"Parents"},{"location":"identifier/#children","text":"","title":"Children"},{"location":"identifier/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"identifier/#other-properties","text":"Aliases: primary key ID UID code Comments: identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both See also: https://en.wikipedia.org/wiki/Identifier","title":"Other properties"},{"location":"ifabsent/","text":"Slot: ifabsent function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: ifabsent"},{"location":"ifabsent/#slot-ifabsent","text":"function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent","title":"Slot: ifabsent"},{"location":"ifabsent/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"ifabsent/#parents","text":"","title":"Parents"},{"location":"ifabsent/#children","text":"","title":"Children"},{"location":"ifabsent/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"imported_from/","text":"Slot: imported_from the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from Domain and Range Element \u2192 0..1 String Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Slot: imported_from"},{"location":"imported_from/#slot-imported_from","text":"the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from","title":"Slot: imported_from"},{"location":"imported_from/#domain-and-range","text":"Element \u2192 0..1 String","title":"Domain and Range"},{"location":"imported_from/#parents","text":"","title":"Parents"},{"location":"imported_from/#children","text":"","title":"Children"},{"location":"imported_from/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"imports/","text":"Slot: imports other schemas that are included in this schema URI: linkml:imports Domain and Range SchemaDefinition \u2192 0..* Uriorcurie Parents Children Used by SchemaDefinition","title":"Slot: imports"},{"location":"imports/#slot-imports","text":"other schemas that are included in this schema URI: linkml:imports","title":"Slot: imports"},{"location":"imports/#domain-and-range","text":"SchemaDefinition \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"imports/#parents","text":"","title":"Parents"},{"location":"imports/#children","text":"","title":"Children"},{"location":"imports/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"in_subset/","text":"Slot: in_subset used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: linkml:in_subset Domain and Range Element \u2192 0..* SubsetDefinition Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: OIO:inSubset","title":"Slot: in_subset"},{"location":"in_subset/#slot-in_subset","text":"used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: linkml:in_subset","title":"Slot: in_subset"},{"location":"in_subset/#domain-and-range","text":"Element \u2192 0..* SubsetDefinition","title":"Domain and Range"},{"location":"in_subset/#parents","text":"","title":"Parents"},{"location":"in_subset/#children","text":"","title":"Children"},{"location":"in_subset/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"in_subset/#other-properties","text":"Mappings: OIO:inSubset","title":"Other properties"},{"location":"inherited/","text":"Slot: inherited true means that the value of a slot is inherited by subclasses URI: linkml:inherited Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: Inherited applies to slot values. Parent slots are always inherited by subclasses","title":"Slot: inherited"},{"location":"inherited/#slot-inherited","text":"true means that the value of a slot is inherited by subclasses URI: linkml:inherited","title":"Slot: inherited"},{"location":"inherited/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"inherited/#parents","text":"","title":"Parents"},{"location":"inherited/#children","text":"","title":"Children"},{"location":"inherited/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inherited/#other-properties","text":"Comments: Inherited applies to slot values. Parent slots are always inherited by subclasses","title":"Other properties"},{"location":"inlined/","text":"Slot: inlined True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: classes without keys or identifiers are necessarily inlined as lists","title":"Slot: inlined"},{"location":"inlined/#slot-inlined","text":"True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined","title":"Slot: inlined"},{"location":"inlined/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"inlined/#parents","text":"","title":"Parents"},{"location":"inlined/#children","text":"","title":"Children"},{"location":"inlined/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inlined/#other-properties","text":"Comments: classes without keys or identifiers are necessarily inlined as lists","title":"Other properties"},{"location":"inlined_as_list/","text":"Slot: inlined_as_list True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#slot-inlined_as_list","text":"True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"inlined_as_list/#parents","text":"","title":"Parents"},{"location":"inlined_as_list/#children","text":"","title":"Children"},{"location":"inlined_as_list/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inlined_as_list/#other-properties","text":"Comments: The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.","title":"Other properties"},{"location":"inverse/","text":"Slot: inverse indicates that any instance of d s r implies that there is also an instance of r s' d URI: linkml:inverse Domain and Range SlotDefinition \u2192 0..1 SlotDefinition Parents Children Used by SlotDefinition Other properties Mappings: owl:inverseOf","title":"Slot: inverse"},{"location":"inverse/#slot-inverse","text":"indicates that any instance of d s r implies that there is also an instance of r s' d URI: linkml:inverse","title":"Slot: inverse"},{"location":"inverse/#domain-and-range","text":"SlotDefinition \u2192 0..1 SlotDefinition","title":"Domain and Range"},{"location":"inverse/#parents","text":"","title":"Parents"},{"location":"inverse/#children","text":"","title":"Children"},{"location":"inverse/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"inverse/#other-properties","text":"Mappings: owl:inverseOf","title":"Other properties"},{"location":"is_a/","text":"Slot: is_a specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a Domain and Range Definition \u2192 0..1 Definition Parents Children class_definition\u279eis_a permissible_value\u279eis_a slot_definition\u279eis_a Used by Definition","title":"Slot: is_a"},{"location":"is_a/#slot-is_a","text":"specifies single-inheritance between classes or slots. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a","title":"Slot: is_a"},{"location":"is_a/#domain-and-range","text":"Definition \u2192 0..1 Definition","title":"Domain and Range"},{"location":"is_a/#parents","text":"","title":"Parents"},{"location":"is_a/#children","text":"class_definition\u279eis_a permissible_value\u279eis_a slot_definition\u279eis_a","title":"Children"},{"location":"is_a/#used-by","text":"Definition","title":"Used by"},{"location":"is_class_field/","text":"Slot: is_class_field indicates that any instance, i, the domain of this slot will include an assert of i s range URI: linkml:is_class_field Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: is_class_field"},{"location":"is_class_field/#slot-is_class_field","text":"indicates that any instance, i, the domain of this slot will include an assert of i s range URI: linkml:is_class_field","title":"Slot: is_class_field"},{"location":"is_class_field/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"is_class_field/#parents","text":"","title":"Parents"},{"location":"is_class_field/#children","text":"","title":"Children"},{"location":"is_class_field/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"is_usage_slot/","text":"Slot: is_usage_slot (deprecated) True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: is_usage_slot _(deprecated)_"},{"location":"is_usage_slot/#slot-is_usage_slot-deprecated","text":"True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot","title":"Slot: is_usage_slot (deprecated)"},{"location":"is_usage_slot/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"is_usage_slot/#parents","text":"","title":"Parents"},{"location":"is_usage_slot/#children","text":"","title":"Children"},{"location":"is_usage_slot/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"key/","text":"Slot: key True means that the key slot(s) uniquely identify the container. URI: linkml:key Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: see also 'unique_key' key is inherited a given domain can have at most one key slot (restriction to be removed in the future) identifiers and keys are mutually exclusive. A given domain cannot have both a key slot is automatically required. Keys cannot be optional","title":"Slot: key"},{"location":"key/#slot-key","text":"True means that the key slot(s) uniquely identify the container. URI: linkml:key","title":"Slot: key"},{"location":"key/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"key/#parents","text":"","title":"Parents"},{"location":"key/#children","text":"","title":"Children"},{"location":"key/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"key/#other-properties","text":"Comments: see also 'unique_key' key is inherited a given domain can have at most one key slot (restriction to be removed in the future) identifiers and keys are mutually exclusive. A given domain cannot have both a key slot is automatically required. Keys cannot be optional","title":"Other properties"},{"location":"last_updated_on/","text":"Slot: last_updated_on time at which the element was last updated URI: linkml:last_updated_on Domain and Range Element \u2192 0..1 Datetime Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Mappings: pav:lastUpdatedOn","title":"Slot: last_updated_on"},{"location":"last_updated_on/#slot-last_updated_on","text":"time at which the element was last updated URI: linkml:last_updated_on","title":"Slot: last_updated_on"},{"location":"last_updated_on/#domain-and-range","text":"Element \u2192 0..1 Datetime","title":"Domain and Range"},{"location":"last_updated_on/#parents","text":"","title":"Parents"},{"location":"last_updated_on/#children","text":"","title":"Children"},{"location":"last_updated_on/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"last_updated_on/#other-properties","text":"Mappings: pav:lastUpdatedOn","title":"Other properties"},{"location":"license/","text":"Slot: license license for the schema URI: linkml:license Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties Mappings: dcterms:license In Subsets: owl","title":"Slot: license"},{"location":"license/#slot-license","text":"license for the schema URI: linkml:license","title":"Slot: license"},{"location":"license/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"license/#parents","text":"","title":"Parents"},{"location":"license/#children","text":"","title":"Children"},{"location":"license/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"license/#other-properties","text":"Mappings: dcterms:license In Subsets: owl","title":"Other properties"},{"location":"local_name_source/","text":"Slot: local_name_source the ncname of the source of the name URI: linkml:local_name_source Domain and Range LocalName \u2192 1..1 Ncname Parents Children Used by LocalName","title":"Slot: local_name_source"},{"location":"local_name_source/#slot-local_name_source","text":"the ncname of the source of the name URI: linkml:local_name_source","title":"Slot: local_name_source"},{"location":"local_name_source/#domain-and-range","text":"LocalName \u2192 1..1 Ncname","title":"Domain and Range"},{"location":"local_name_source/#parents","text":"","title":"Parents"},{"location":"local_name_source/#children","text":"","title":"Children"},{"location":"local_name_source/#used-by","text":"LocalName","title":"Used by"},{"location":"local_name_value/","text":"Slot: local_name_value a name assigned to an element in a given ontology URI: linkml:local_name_value Domain and Range LocalName \u2192 1..1 String Parents Children Used by LocalName Other properties Mappings: skos:altLabel","title":"Slot: local_name_value"},{"location":"local_name_value/#slot-local_name_value","text":"a name assigned to an element in a given ontology URI: linkml:local_name_value","title":"Slot: local_name_value"},{"location":"local_name_value/#domain-and-range","text":"LocalName \u2192 1..1 String","title":"Domain and Range"},{"location":"local_name_value/#parents","text":"","title":"Parents"},{"location":"local_name_value/#children","text":"","title":"Children"},{"location":"local_name_value/#used-by","text":"LocalName","title":"Used by"},{"location":"local_name_value/#other-properties","text":"Mappings: skos:altLabel","title":"Other properties"},{"location":"local_names/","text":"Slot: local_names URI: linkml:local_names Domain and Range Element \u2192 0..* LocalName Parents Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Slot: local_names"},{"location":"local_names/#slot-local_names","text":"URI: linkml:local_names","title":"Slot: local_names"},{"location":"local_names/#domain-and-range","text":"Element \u2192 0..* LocalName","title":"Domain and Range"},{"location":"local_names/#parents","text":"","title":"Parents"},{"location":"local_names/#children","text":"","title":"Children"},{"location":"local_names/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"mappings/","text":"Slot: mappings A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. URI: linkml:mappings Domain and Range None \u2192 0..* Uriorcurie Parents Children broad mappings close mappings exact mappings narrow mappings related mappings Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:mappingRelation","title":"Slot: mappings"},{"location":"mappings/#slot-mappings","text":"A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. URI: linkml:mappings","title":"Slot: mappings"},{"location":"mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"mappings/#parents","text":"","title":"Parents"},{"location":"mappings/#children","text":"broad mappings close mappings exact mappings narrow mappings related mappings","title":"Children"},{"location":"mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"mappings/#other-properties","text":"Mappings: skos:mappingRelation","title":"Other properties"},{"location":"maximum_value/","text":"Slot: maximum_value for slots with ranges of type number, the value must be equal to or lowe than this URI: linkml:maximum_value Domain and Range SlotDefinition \u2192 0..1 Integer Parents Children Used by SlotDefinition","title":"Slot: maximum_value"},{"location":"maximum_value/#slot-maximum_value","text":"for slots with ranges of type number, the value must be equal to or lowe than this URI: linkml:maximum_value","title":"Slot: maximum_value"},{"location":"maximum_value/#domain-and-range","text":"SlotDefinition \u2192 0..1 Integer","title":"Domain and Range"},{"location":"maximum_value/#parents","text":"","title":"Parents"},{"location":"maximum_value/#children","text":"","title":"Children"},{"location":"maximum_value/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"meaning/","text":"Slot: meaning the value meaning (in the 11179 sense) of a permissible value URI: linkml:meaning Domain and Range PermissibleValue \u2192 0..1 Uriorcurie Parents Children Used by PermissibleValue","title":"Slot: meaning"},{"location":"meaning/#slot-meaning","text":"the value meaning (in the 11179 sense) of a permissible value URI: linkml:meaning","title":"Slot: meaning"},{"location":"meaning/#domain-and-range","text":"PermissibleValue \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"meaning/#parents","text":"","title":"Parents"},{"location":"meaning/#children","text":"","title":"Children"},{"location":"meaning/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"metamodel_version/","text":"Slot: metamodel_version Version of the metamodel used to load the schema URI: linkml:metamodel_version Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: metamodel_version"},{"location":"metamodel_version/#slot-metamodel_version","text":"Version of the metamodel used to load the schema URI: linkml:metamodel_version","title":"Slot: metamodel_version"},{"location":"metamodel_version/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"metamodel_version/#parents","text":"","title":"Parents"},{"location":"metamodel_version/#children","text":"","title":"Children"},{"location":"metamodel_version/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"metamodel_version/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"minimum_value/","text":"Slot: minimum_value for slots with ranges of type number, the value must be equal to or higher than this URI: linkml:minimum_value Domain and Range SlotDefinition \u2192 0..1 Integer Parents Children Used by SlotDefinition","title":"Slot: minimum_value"},{"location":"minimum_value/#slot-minimum_value","text":"for slots with ranges of type number, the value must be equal to or higher than this URI: linkml:minimum_value","title":"Slot: minimum_value"},{"location":"minimum_value/#domain-and-range","text":"SlotDefinition \u2192 0..1 Integer","title":"Domain and Range"},{"location":"minimum_value/#parents","text":"","title":"Parents"},{"location":"minimum_value/#children","text":"","title":"Children"},{"location":"minimum_value/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"mixin/","text":"Slot: mixin this slot or class can only be used as a mixin. URI: linkml:mixin Domain and Range Definition \u2192 0..1 Boolean Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Aliases: trait See also: https://en.wikipedia.org/wiki/Mixin","title":"Slot: mixin"},{"location":"mixin/#slot-mixin","text":"this slot or class can only be used as a mixin. URI: linkml:mixin","title":"Slot: mixin"},{"location":"mixin/#domain-and-range","text":"Definition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"mixin/#parents","text":"","title":"Parents"},{"location":"mixin/#children","text":"","title":"Children"},{"location":"mixin/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"mixin/#other-properties","text":"Aliases: trait See also: https://en.wikipedia.org/wiki/Mixin","title":"Other properties"},{"location":"mixins/","text":"Slot: mixins List of definitions to be mixed in. Targets may be any definition of the same type URI: linkml:mixins Domain and Range Definition \u2192 0..* Definition Parents Children class_definition\u279emixins permissible_value\u279emixins slot_definition\u279emixins Used by Definition Other properties Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance See also: https://en.wikipedia.org/wiki/Mixin","title":"Slot: mixins"},{"location":"mixins/#slot-mixins","text":"List of definitions to be mixed in. Targets may be any definition of the same type URI: linkml:mixins","title":"Slot: mixins"},{"location":"mixins/#domain-and-range","text":"Definition \u2192 0..* Definition","title":"Domain and Range"},{"location":"mixins/#parents","text":"","title":"Parents"},{"location":"mixins/#children","text":"class_definition\u279emixins permissible_value\u279emixins slot_definition\u279emixins","title":"Children"},{"location":"mixins/#used-by","text":"Definition","title":"Used by"},{"location":"mixins/#other-properties","text":"Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance See also: https://en.wikipedia.org/wiki/Mixin","title":"Other properties"},{"location":"modified_by/","text":"Slot: modified_by agent that modified the element URI: linkml:modified_by Domain and Range Element \u2192 0..1 Uriorcurie Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Mappings: oslc:modifiedBy","title":"Slot: modified_by"},{"location":"modified_by/#slot-modified_by","text":"agent that modified the element URI: linkml:modified_by","title":"Slot: modified_by"},{"location":"modified_by/#domain-and-range","text":"Element \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"modified_by/#parents","text":"","title":"Parents"},{"location":"modified_by/#children","text":"","title":"Children"},{"location":"modified_by/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"modified_by/#other-properties","text":"Mappings: oslc:modifiedBy","title":"Other properties"},{"location":"multivalued/","text":"Slot: multivalued true means that slot can have more than one value URI: linkml:multivalued Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: multivalued"},{"location":"multivalued/#slot-multivalued","text":"true means that slot can have more than one value URI: linkml:multivalued","title":"Slot: multivalued"},{"location":"multivalued/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"multivalued/#parents","text":"","title":"Parents"},{"location":"multivalued/#children","text":"","title":"Children"},{"location":"multivalued/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"name/","text":"Slot: name the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. URI: linkml:name Domain and Range Element \u2192 1..1 String Parents Children schema_definition\u279ename Used by ClassDefinition Definition Element EnumDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: rdfs:label schema:name In Subsets: owl See also: https://en.wikipedia.org/wiki/Data_element_name","title":"Slot: name"},{"location":"name/#slot-name","text":"the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. URI: linkml:name","title":"Slot: name"},{"location":"name/#domain-and-range","text":"Element \u2192 1..1 String","title":"Domain and Range"},{"location":"name/#parents","text":"","title":"Parents"},{"location":"name/#children","text":"schema_definition\u279ename","title":"Children"},{"location":"name/#used-by","text":"ClassDefinition Definition Element EnumDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"name/#other-properties","text":"Mappings: rdfs:label schema:name In Subsets: owl See also: https://en.wikipedia.org/wiki/Data_element_name","title":"Other properties"},{"location":"narrow_mappings/","text":"Slot: narrow mappings A list of terms from different schemas or terminology systems that have narrower meaning. URI: linkml:narrow_mappings Domain and Range None \u2192 0..* Uriorcurie Parents is_a: mappings Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:narrowMatch","title":"Slot: narrow mappings"},{"location":"narrow_mappings/#slot-narrow-mappings","text":"A list of terms from different schemas or terminology systems that have narrower meaning. URI: linkml:narrow_mappings","title":"Slot: narrow mappings"},{"location":"narrow_mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"narrow_mappings/#parents","text":"is_a: mappings","title":"Parents"},{"location":"narrow_mappings/#children","text":"","title":"Children"},{"location":"narrow_mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"narrow_mappings/#other-properties","text":"Mappings: skos:narrowMatch","title":"Other properties"},{"location":"notes/","text":"Slot: notes editorial notes about an element intended for internal consumption URI: linkml:notes Domain and Range Element \u2192 0..* String Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:editorialNote In Subsets: owl","title":"Slot: notes"},{"location":"notes/#slot-notes","text":"editorial notes about an element intended for internal consumption URI: linkml:notes","title":"Slot: notes"},{"location":"notes/#domain-and-range","text":"Element \u2192 0..* String","title":"Domain and Range"},{"location":"notes/#parents","text":"","title":"Parents"},{"location":"notes/#children","text":"","title":"Children"},{"location":"notes/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"notes/#other-properties","text":"Mappings: skos:editorialNote In Subsets: owl","title":"Other properties"},{"location":"owner/","text":"Slot: owner (deprecated) the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner Domain and Range SlotDefinition \u2192 0..1 Definition Parents Children Used by SlotDefinition","title":"Slot: owner _(deprecated)_"},{"location":"owner/#slot-owner-deprecated","text":"the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner","title":"Slot: owner (deprecated)"},{"location":"owner/#domain-and-range","text":"SlotDefinition \u2192 0..1 Definition","title":"Domain and Range"},{"location":"owner/#parents","text":"","title":"Parents"},{"location":"owner/#children","text":"","title":"Children"},{"location":"owner/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"pattern/","text":"Slot: pattern the string value of the slot must conform to this regular expression URI: linkml:pattern Domain and Range Definition \u2192 0..1 String Parents Children Used by SlotDefinition TypeDefinition","title":"Slot: pattern"},{"location":"pattern/#slot-pattern","text":"the string value of the slot must conform to this regular expression URI: linkml:pattern","title":"Slot: pattern"},{"location":"pattern/#domain-and-range","text":"Definition \u2192 0..1 String","title":"Domain and Range"},{"location":"pattern/#parents","text":"","title":"Parents"},{"location":"pattern/#children","text":"","title":"Children"},{"location":"pattern/#used-by","text":"SlotDefinition TypeDefinition","title":"Used by"},{"location":"permissible_value_is_a/","text":"Slot: is_a URI: linkml:permissible_value_is_a Domain and Range PermissibleValue \u2192 0..1 PermissibleValue Parents is_a: is_a Children Used by PermissibleValue","title":"Slot: is_a"},{"location":"permissible_value_is_a/#slot-is_a","text":"URI: linkml:permissible_value_is_a","title":"Slot: is_a"},{"location":"permissible_value_is_a/#domain-and-range","text":"PermissibleValue \u2192 0..1 PermissibleValue","title":"Domain and Range"},{"location":"permissible_value_is_a/#parents","text":"is_a: is_a","title":"Parents"},{"location":"permissible_value_is_a/#children","text":"","title":"Children"},{"location":"permissible_value_is_a/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"permissible_value_mixins/","text":"Slot: mixins URI: linkml:permissible_value_mixins Domain and Range PermissibleValue \u2192 0..* PermissibleValue Parents is_a: mixins Children Used by PermissibleValue","title":"Slot: mixins"},{"location":"permissible_value_mixins/#slot-mixins","text":"URI: linkml:permissible_value_mixins","title":"Slot: mixins"},{"location":"permissible_value_mixins/#domain-and-range","text":"PermissibleValue \u2192 0..* PermissibleValue","title":"Domain and Range"},{"location":"permissible_value_mixins/#parents","text":"is_a: mixins","title":"Parents"},{"location":"permissible_value_mixins/#children","text":"","title":"Children"},{"location":"permissible_value_mixins/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"permissible_values/","text":"Slot: permissible_values A list of possible values for a slot range URI: linkml:permissible_values Domain and Range EnumDefinition \u2192 0..* PermissibleValue Parents Children Used by EnumDefinition","title":"Slot: permissible_values"},{"location":"permissible_values/#slot-permissible_values","text":"A list of possible values for a slot range URI: linkml:permissible_values","title":"Slot: permissible_values"},{"location":"permissible_values/#domain-and-range","text":"EnumDefinition \u2192 0..* PermissibleValue","title":"Domain and Range"},{"location":"permissible_values/#parents","text":"","title":"Parents"},{"location":"permissible_values/#children","text":"","title":"Children"},{"location":"permissible_values/#used-by","text":"EnumDefinition","title":"Used by"},{"location":"prefix_prefix/","text":"Slot: prefix_prefix the nsname (sans ':' for a given prefix) URI: linkml:prefix_prefix Domain and Range Prefix \u2192 1..1 Ncname Parents Children Used by Prefix","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#slot-prefix_prefix","text":"the nsname (sans ':' for a given prefix) URI: linkml:prefix_prefix","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#domain-and-range","text":"Prefix \u2192 1..1 Ncname","title":"Domain and Range"},{"location":"prefix_prefix/#parents","text":"","title":"Parents"},{"location":"prefix_prefix/#children","text":"","title":"Children"},{"location":"prefix_prefix/#used-by","text":"Prefix","title":"Used by"},{"location":"prefix_reference/","text":"Slot: prefix_reference A URI associated with a given prefix URI: linkml:prefix_reference Domain and Range Prefix \u2192 1..1 Uri Parents Children Used by Prefix","title":"Slot: prefix_reference"},{"location":"prefix_reference/#slot-prefix_reference","text":"A URI associated with a given prefix URI: linkml:prefix_reference","title":"Slot: prefix_reference"},{"location":"prefix_reference/#domain-and-range","text":"Prefix \u2192 1..1 Uri","title":"Domain and Range"},{"location":"prefix_reference/#parents","text":"","title":"Parents"},{"location":"prefix_reference/#children","text":"","title":"Children"},{"location":"prefix_reference/#used-by","text":"Prefix","title":"Used by"},{"location":"prefixes/","text":"Slot: prefixes prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: linkml:prefixes Domain and Range SchemaDefinition \u2192 0..* Prefix Parents Children Used by SchemaDefinition","title":"Slot: prefixes"},{"location":"prefixes/#slot-prefixes","text":"prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: linkml:prefixes","title":"Slot: prefixes"},{"location":"prefixes/#domain-and-range","text":"SchemaDefinition \u2192 0..* Prefix","title":"Domain and Range"},{"location":"prefixes/#parents","text":"","title":"Parents"},{"location":"prefixes/#children","text":"","title":"Children"},{"location":"prefixes/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"pv_formula/","text":"Slot: pv_formula Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula Domain and Range EnumDefinition \u2192 0..1 pv_formula_options Parents Children Used by EnumDefinition Other properties Comments: you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid","title":"Slot: pv_formula"},{"location":"pv_formula/#slot-pv_formula","text":"Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula","title":"Slot: pv_formula"},{"location":"pv_formula/#domain-and-range","text":"EnumDefinition \u2192 0..1 pv_formula_options","title":"Domain and Range"},{"location":"pv_formula/#parents","text":"","title":"Parents"},{"location":"pv_formula/#children","text":"","title":"Children"},{"location":"pv_formula/#used-by","text":"EnumDefinition","title":"Used by"},{"location":"pv_formula/#other-properties","text":"Comments: you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid","title":"Other properties"},{"location":"pv_formula_options/","text":"Enum: pv_formula_options The formula used to generate the set of permissible values from the code_set values URI: linkml:pv_formula_options Other properties Permissible Values Text Description Meaning Other Information CODE The permissible values are the set of possible codes in the code set CURIE The permissible values are the set of CURIES in the code set URI The permissible values are the set of code URIs in the code set FHIR_CODING The permissible values are the set of FHIR coding elements derived from the code set","title":"Enum: pv_formula_options"},{"location":"pv_formula_options/#enum-pv_formula_options","text":"The formula used to generate the set of permissible values from the code_set values URI: linkml:pv_formula_options","title":"Enum: pv_formula_options"},{"location":"pv_formula_options/#other-properties","text":"","title":"Other properties"},{"location":"pv_formula_options/#permissible-values","text":"Text Description Meaning Other Information CODE The permissible values are the set of possible codes in the code set CURIE The permissible values are the set of CURIES in the code set URI The permissible values are the set of code URIs in the code set FHIR_CODING The permissible values are the set of FHIR coding elements derived from the code set","title":"Permissible Values"},{"location":"range/","text":"Slot: range defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 URI: linkml:range Domain and Range SlotDefinition \u2192 0..1 Element Parents Children Used by SlotDefinition Other properties Comments: range is underspecified, as not all elements can appear as the range of a slot.","title":"Slot: range"},{"location":"range/#slot-range","text":"defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 URI: linkml:range","title":"Slot: range"},{"location":"range/#domain-and-range","text":"SlotDefinition \u2192 0..1 Element","title":"Domain and Range"},{"location":"range/#parents","text":"","title":"Parents"},{"location":"range/#children","text":"","title":"Children"},{"location":"range/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"range/#other-properties","text":"Comments: range is underspecified, as not all elements can appear as the range of a slot.","title":"Other properties"},{"location":"readonly/","text":"Slot: readonly If present, slot is read only. Text explains why URI: linkml:readonly Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: readonly"},{"location":"readonly/#slot-readonly","text":"If present, slot is read only. Text explains why URI: linkml:readonly","title":"Slot: readonly"},{"location":"readonly/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"readonly/#parents","text":"","title":"Parents"},{"location":"readonly/#children","text":"","title":"Children"},{"location":"readonly/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"recommended/","text":"Slot: recommended true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition Other properties Comments: This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data See also: https://github.com/linkml/linkml/issues/177","title":"Slot: recommended"},{"location":"recommended/#slot-recommended","text":"true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended","title":"Slot: recommended"},{"location":"recommended/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"recommended/#parents","text":"","title":"Parents"},{"location":"recommended/#children","text":"","title":"Children"},{"location":"recommended/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"recommended/#other-properties","text":"Comments: This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data See also: https://github.com/linkml/linkml/issues/177","title":"Other properties"},{"location":"related_mappings/","text":"Slot: related mappings A list of terms from different schemas or terminology systems that have related meaning. URI: linkml:related_mappings Domain and Range None \u2192 0..* Uriorcurie Parents is_a: mappings Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: skos:relatedMatch","title":"Slot: related mappings"},{"location":"related_mappings/#slot-related-mappings","text":"A list of terms from different schemas or terminology systems that have related meaning. URI: linkml:related_mappings","title":"Slot: related mappings"},{"location":"related_mappings/#domain-and-range","text":"None \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"related_mappings/#parents","text":"is_a: mappings","title":"Parents"},{"location":"related_mappings/#children","text":"","title":"Children"},{"location":"related_mappings/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"related_mappings/#other-properties","text":"Mappings: skos:relatedMatch","title":"Other properties"},{"location":"repr/","text":"Slot: repr the name of the python object that implements this type definition URI: linkml:repr Domain and Range TypeDefinition \u2192 0..1 String Parents Children Used by TypeDefinition","title":"Slot: repr"},{"location":"repr/#slot-repr","text":"the name of the python object that implements this type definition URI: linkml:repr","title":"Slot: repr"},{"location":"repr/#domain-and-range","text":"TypeDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"repr/#parents","text":"","title":"Parents"},{"location":"repr/#children","text":"","title":"Children"},{"location":"repr/#used-by","text":"TypeDefinition","title":"Used by"},{"location":"required/","text":"Slot: required true means that the slot must be present in the loaded definition URI: linkml:required Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: required"},{"location":"required/#slot-required","text":"true means that the slot must be present in the loaded definition URI: linkml:required","title":"Slot: required"},{"location":"required/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"required/#parents","text":"","title":"Parents"},{"location":"required/#children","text":"","title":"Children"},{"location":"required/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"role/","text":"Slot: role the role played by the slot range URI: linkml:role Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: role"},{"location":"role/#slot-role","text":"the role played by the slot range URI: linkml:role","title":"Slot: role"},{"location":"role/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"role/#parents","text":"","title":"Parents"},{"location":"role/#children","text":"","title":"Children"},{"location":"role/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"schema_definition_name/","text":"Slot: name URI: linkml:schema_definition_name Domain and Range SchemaDefinition \u2192 1..1 Ncname Parents is_a: name Children Used by SchemaDefinition","title":"Slot: name"},{"location":"schema_definition_name/#slot-name","text":"URI: linkml:schema_definition_name","title":"Slot: name"},{"location":"schema_definition_name/#domain-and-range","text":"SchemaDefinition \u2192 1..1 Ncname","title":"Domain and Range"},{"location":"schema_definition_name/#parents","text":"is_a: name","title":"Parents"},{"location":"schema_definition_name/#children","text":"","title":"Children"},{"location":"schema_definition_name/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"see_also/","text":"Slot: see_also a reference URI: linkml:see_also Domain and Range Element \u2192 0..* Uriorcurie Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: rdfs:seeAlso In Subsets: owl","title":"Slot: see_also"},{"location":"see_also/#slot-see_also","text":"a reference URI: linkml:see_also","title":"Slot: see_also"},{"location":"see_also/#domain-and-range","text":"Element \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"see_also/#parents","text":"","title":"Parents"},{"location":"see_also/#children","text":"","title":"Children"},{"location":"see_also/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"see_also/#other-properties","text":"Mappings: rdfs:seeAlso In Subsets: owl","title":"Other properties"},{"location":"singular_name/","text":"Slot: singular_name a name that is used in the singular form URI: linkml:singular_name Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition Other properties Mappings: skos:altLabel","title":"Slot: singular_name"},{"location":"singular_name/#slot-singular_name","text":"a name that is used in the singular form URI: linkml:singular_name","title":"Slot: singular_name"},{"location":"singular_name/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"singular_name/#parents","text":"","title":"Parents"},{"location":"singular_name/#children","text":"","title":"Children"},{"location":"singular_name/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"singular_name/#other-properties","text":"Mappings: skos:altLabel","title":"Other properties"},{"location":"slot_definition_apply_to/","text":"Slot: apply_to URI: linkml:slot_definition_apply_to Domain and Range SlotDefinition \u2192 0..* SlotDefinition Parents is_a: apply_to Children Used by SlotDefinition","title":"Slot: apply_to"},{"location":"slot_definition_apply_to/#slot-apply_to","text":"URI: linkml:slot_definition_apply_to","title":"Slot: apply_to"},{"location":"slot_definition_apply_to/#domain-and-range","text":"SlotDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_apply_to/#parents","text":"is_a: apply_to","title":"Parents"},{"location":"slot_definition_apply_to/#children","text":"","title":"Children"},{"location":"slot_definition_apply_to/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definition_is_a/","text":"Slot: is_a URI: linkml:slot_definition_is_a Domain and Range SlotDefinition \u2192 0..1 SlotDefinition Parents is_a: is_a Children Used by SlotDefinition","title":"Slot: is_a"},{"location":"slot_definition_is_a/#slot-is_a","text":"URI: linkml:slot_definition_is_a","title":"Slot: is_a"},{"location":"slot_definition_is_a/#domain-and-range","text":"SlotDefinition \u2192 0..1 SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_is_a/#parents","text":"is_a: is_a","title":"Parents"},{"location":"slot_definition_is_a/#children","text":"","title":"Children"},{"location":"slot_definition_is_a/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definition_mixins/","text":"Slot: mixins URI: linkml:slot_definition_mixins Domain and Range SlotDefinition \u2192 0..* SlotDefinition Parents is_a: mixins Children Used by SlotDefinition","title":"Slot: mixins"},{"location":"slot_definition_mixins/#slot-mixins","text":"URI: linkml:slot_definition_mixins","title":"Slot: mixins"},{"location":"slot_definition_mixins/#domain-and-range","text":"SlotDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_mixins/#parents","text":"is_a: mixins","title":"Parents"},{"location":"slot_definition_mixins/#children","text":"","title":"Children"},{"location":"slot_definition_mixins/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definitions/","text":"Slot: slots slot definitions URI: linkml:slot_definitions Domain and Range SchemaDefinition \u2192 0..* SlotDefinition Parents Children Used by SchemaDefinition","title":"Slot: slots"},{"location":"slot_definitions/#slot-slots","text":"slot definitions URI: linkml:slot_definitions","title":"Slot: slots"},{"location":"slot_definitions/#domain-and-range","text":"SchemaDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definitions/#parents","text":"","title":"Parents"},{"location":"slot_definitions/#children","text":"","title":"Children"},{"location":"slot_definitions/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"slot_uri/","text":"Slot: slot_uri predicate of this slot for semantic web application URI: linkml:slot_uri Domain and Range SlotDefinition \u2192 0..1 Uriorcurie Parents Children Used by SlotDefinition","title":"Slot: slot_uri"},{"location":"slot_uri/#slot-slot_uri","text":"predicate of this slot for semantic web application URI: linkml:slot_uri","title":"Slot: slot_uri"},{"location":"slot_uri/#domain-and-range","text":"SlotDefinition \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"slot_uri/#parents","text":"","title":"Parents"},{"location":"slot_uri/#children","text":"","title":"Children"},{"location":"slot_uri/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_usage/","text":"Slot: slot_usage the redefinition of a slot in the context of the containing class definition. URI: linkml:slot_usage Domain and Range ClassDefinition \u2192 0..* SlotDefinition Parents Children Used by ClassDefinition Other properties Comments: Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints","title":"Slot: slot_usage"},{"location":"slot_usage/#slot-slot_usage","text":"the redefinition of a slot in the context of the containing class definition. URI: linkml:slot_usage","title":"Slot: slot_usage"},{"location":"slot_usage/#domain-and-range","text":"ClassDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_usage/#parents","text":"","title":"Parents"},{"location":"slot_usage/#children","text":"","title":"Children"},{"location":"slot_usage/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"slot_usage/#other-properties","text":"Comments: Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints","title":"Other properties"},{"location":"slots/","text":"Slot: slots list of slot names that are applicable to a class URI: linkml:slots Domain and Range ClassDefinition \u2192 0..* SlotDefinition Parents Children Used by ClassDefinition Other properties Comments: This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally,","title":"Slot: slots"},{"location":"slots/#slot-slots","text":"list of slot names that are applicable to a class URI: linkml:slots","title":"Slot: slots"},{"location":"slots/#domain-and-range","text":"ClassDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slots/#parents","text":"","title":"Parents"},{"location":"slots/#children","text":"","title":"Children"},{"location":"slots/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"slots/#other-properties","text":"Comments: This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally,","title":"Other properties"},{"location":"source_file/","text":"Slot: source_file name, uri or description of the source of the schema URI: linkml:source_file Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: source_file"},{"location":"source_file/#slot-source_file","text":"name, uri or description of the source of the schema URI: linkml:source_file","title":"Slot: source_file"},{"location":"source_file/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"source_file/#parents","text":"","title":"Parents"},{"location":"source_file/#children","text":"","title":"Children"},{"location":"source_file/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"source_file/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"source_file_date/","text":"Slot: source_file_date modification date of the source of the schema URI: linkml:source_file_date Domain and Range SchemaDefinition \u2192 0..1 Datetime Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: source_file_date"},{"location":"source_file_date/#slot-source_file_date","text":"modification date of the source of the schema URI: linkml:source_file_date","title":"Slot: source_file_date"},{"location":"source_file_date/#domain-and-range","text":"SchemaDefinition \u2192 0..1 Datetime","title":"Domain and Range"},{"location":"source_file_date/#parents","text":"","title":"Parents"},{"location":"source_file_date/#children","text":"","title":"Children"},{"location":"source_file_date/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"source_file_date/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"source_file_size/","text":"Slot: source_file_size size in bytes of the source of the schema URI: linkml:source_file_size Domain and Range SchemaDefinition \u2192 0..1 Integer Parents Children Used by SchemaDefinition Other properties In Subsets: owl","title":"Slot: source_file_size"},{"location":"source_file_size/#slot-source_file_size","text":"size in bytes of the source of the schema URI: linkml:source_file_size","title":"Slot: source_file_size"},{"location":"source_file_size/#domain-and-range","text":"SchemaDefinition \u2192 0..1 Integer","title":"Domain and Range"},{"location":"source_file_size/#parents","text":"","title":"Parents"},{"location":"source_file_size/#children","text":"","title":"Children"},{"location":"source_file_size/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"source_file_size/#other-properties","text":"In Subsets: owl","title":"Other properties"},{"location":"status/","text":"Slot: status status of the element URI: linkml:status Domain and Range Element \u2192 0..1 Uriorcurie Parents Children Used by ClassDefinition Definition SlotDefinition Other properties Mappings: bibo:status Examples: Example(value='bibo:draft', description=None)","title":"Slot: status"},{"location":"status/#slot-status","text":"status of the element URI: linkml:status","title":"Slot: status"},{"location":"status/#domain-and-range","text":"Element \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"status/#parents","text":"","title":"Parents"},{"location":"status/#children","text":"","title":"Children"},{"location":"status/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"status/#other-properties","text":"Mappings: bibo:status Examples: Example(value='bibo:draft', description=None)","title":"Other properties"},{"location":"string_serialization/","text":"Slot: string_serialization Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization Domain and Range Definition \u2192 0..1 String Parents Children Used by ClassDefinition Definition SlotDefinition Other properties See also: https://github.com/linkml/issues/128","title":"Slot: string_serialization"},{"location":"string_serialization/#slot-string_serialization","text":"Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization","title":"Slot: string_serialization"},{"location":"string_serialization/#domain-and-range","text":"Definition \u2192 0..1 String","title":"Domain and Range"},{"location":"string_serialization/#parents","text":"","title":"Parents"},{"location":"string_serialization/#children","text":"","title":"Children"},{"location":"string_serialization/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"string_serialization/#other-properties","text":"See also: https://github.com/linkml/issues/128","title":"Other properties"},{"location":"subclass_of/","text":"Slot: subclass_of rdfs:subClassOf to be emitted in OWL generation URI: linkml:subclass_of Domain and Range ClassDefinition \u2192 0..1 Uriorcurie Parents Children Used by ClassDefinition Other properties Mappings: rdfs:subClassOf","title":"Slot: subclass_of"},{"location":"subclass_of/#slot-subclass_of","text":"rdfs:subClassOf to be emitted in OWL generation URI: linkml:subclass_of","title":"Slot: subclass_of"},{"location":"subclass_of/#domain-and-range","text":"ClassDefinition \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"subclass_of/#parents","text":"","title":"Parents"},{"location":"subclass_of/#children","text":"","title":"Children"},{"location":"subclass_of/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"subclass_of/#other-properties","text":"Mappings: rdfs:subClassOf","title":"Other properties"},{"location":"subproperty_of/","text":"Slot: subproperty_of Ontology property which this slot is a subproperty of URI: linkml:subproperty_of Domain and Range SlotDefinition \u2192 0..1 SlotDefinition Parents Children Used by SlotDefinition Other properties Mappings: rdfs:subPropertyOf","title":"Slot: subproperty_of"},{"location":"subproperty_of/#slot-subproperty_of","text":"Ontology property which this slot is a subproperty of URI: linkml:subproperty_of","title":"Slot: subproperty_of"},{"location":"subproperty_of/#domain-and-range","text":"SlotDefinition \u2192 0..1 SlotDefinition","title":"Domain and Range"},{"location":"subproperty_of/#parents","text":"","title":"Parents"},{"location":"subproperty_of/#children","text":"","title":"Children"},{"location":"subproperty_of/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"subproperty_of/#other-properties","text":"Mappings: rdfs:subPropertyOf","title":"Other properties"},{"location":"subsets/","text":"Slot: subsets list of subsets referenced in this model URI: linkml:subsets Domain and Range SchemaDefinition \u2192 0..* SubsetDefinition Parents Children Used by SchemaDefinition","title":"Slot: subsets"},{"location":"subsets/#slot-subsets","text":"list of subsets referenced in this model URI: linkml:subsets","title":"Slot: subsets"},{"location":"subsets/#domain-and-range","text":"SchemaDefinition \u2192 0..* SubsetDefinition","title":"Domain and Range"},{"location":"subsets/#parents","text":"","title":"Parents"},{"location":"subsets/#children","text":"","title":"Children"},{"location":"subsets/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"symmetric/","text":"Slot: symmetric True means that any instance of d s r implies that there is also an instance of r s d URI: linkml:symmetric Domain and Range SlotDefinition \u2192 0..1 Boolean Parents Children Used by SlotDefinition","title":"Slot: symmetric"},{"location":"symmetric/#slot-symmetric","text":"True means that any instance of d s r implies that there is also an instance of r s d URI: linkml:symmetric","title":"Slot: symmetric"},{"location":"symmetric/#domain-and-range","text":"SlotDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"symmetric/#parents","text":"","title":"Parents"},{"location":"symmetric/#children","text":"","title":"Children"},{"location":"symmetric/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"text/","text":"Slot: text URI: linkml:text Domain and Range PermissibleValue \u2192 1..1 String Parents Children Used by PermissibleValue","title":"Slot: text"},{"location":"text/#slot-text","text":"URI: linkml:text","title":"Slot: text"},{"location":"text/#domain-and-range","text":"PermissibleValue \u2192 1..1 String","title":"Domain and Range"},{"location":"text/#parents","text":"","title":"Parents"},{"location":"text/#children","text":"","title":"Children"},{"location":"text/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"title/","text":"Slot: title the official title of the element URI: linkml:title Domain and Range Element \u2192 0..1 String Parents Children Used by ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition Other properties Mappings: dcterms:title In Subsets: owl","title":"Slot: title"},{"location":"title/#slot-title","text":"the official title of the element URI: linkml:title","title":"Slot: title"},{"location":"title/#domain-and-range","text":"Element \u2192 0..1 String","title":"Domain and Range"},{"location":"title/#parents","text":"","title":"Parents"},{"location":"title/#children","text":"","title":"Children"},{"location":"title/#used-by","text":"ClassDefinition Definition Element EnumDefinition SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"title/#other-properties","text":"Mappings: dcterms:title In Subsets: owl","title":"Other properties"},{"location":"todos/","text":"Slot: todos Outstanding issue that needs resolution URI: linkml:todos Domain and Range Element \u2192 0..* String Parents Children Used by ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Slot: todos"},{"location":"todos/#slot-todos","text":"Outstanding issue that needs resolution URI: linkml:todos","title":"Slot: todos"},{"location":"todos/#domain-and-range","text":"Element \u2192 0..* String","title":"Domain and Range"},{"location":"todos/#parents","text":"","title":"Parents"},{"location":"todos/#children","text":"","title":"Children"},{"location":"todos/#used-by","text":"ClassDefinition CommonMetadata Definition Element EnumDefinition PermissibleValue SchemaDefinition SlotDefinition SubsetDefinition TypeDefinition","title":"Used by"},{"location":"tree_root/","text":"Slot: tree_root indicator that this is the root class in tree structures URI: linkml:tree_root Domain and Range ClassDefinition \u2192 0..1 Boolean Parents Children Used by ClassDefinition","title":"Slot: tree_root"},{"location":"tree_root/#slot-tree_root","text":"indicator that this is the root class in tree structures URI: linkml:tree_root","title":"Slot: tree_root"},{"location":"tree_root/#domain-and-range","text":"ClassDefinition \u2192 0..1 Boolean","title":"Domain and Range"},{"location":"tree_root/#parents","text":"","title":"Parents"},{"location":"tree_root/#children","text":"","title":"Children"},{"location":"tree_root/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"type_uri/","text":"Slot: uri The uri that defines the possible values for the type definition URI: linkml:type_uri Domain and Range TypeDefinition \u2192 0..1 Uriorcurie Parents Children Used by TypeDefinition Other properties Comments: uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) every root type must have a type uri","title":"Slot: uri"},{"location":"type_uri/#slot-uri","text":"The uri that defines the possible values for the type definition URI: linkml:type_uri","title":"Slot: uri"},{"location":"type_uri/#domain-and-range","text":"TypeDefinition \u2192 0..1 Uriorcurie","title":"Domain and Range"},{"location":"type_uri/#parents","text":"","title":"Parents"},{"location":"type_uri/#children","text":"","title":"Children"},{"location":"type_uri/#used-by","text":"TypeDefinition","title":"Used by"},{"location":"type_uri/#other-properties","text":"Comments: uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) every root type must have a type uri","title":"Other properties"},{"location":"typeof/","text":"Slot: typeof Names a parent type URI: linkml:typeof Domain and Range TypeDefinition \u2192 0..1 TypeDefinition Parents Children Used by TypeDefinition Other properties Comments: the target type definition of the typeof slot is referred to as the \"parent type\" the type definition containing the typeof slot is referred to as the \"child type\" type definitions without a typeof slot are referred to as a \"root type\"","title":"Slot: typeof"},{"location":"typeof/#slot-typeof","text":"Names a parent type URI: linkml:typeof","title":"Slot: typeof"},{"location":"typeof/#domain-and-range","text":"TypeDefinition \u2192 0..1 TypeDefinition","title":"Domain and Range"},{"location":"typeof/#parents","text":"","title":"Parents"},{"location":"typeof/#children","text":"","title":"Children"},{"location":"typeof/#used-by","text":"TypeDefinition","title":"Used by"},{"location":"typeof/#other-properties","text":"Comments: the target type definition of the typeof slot is referred to as the \"parent type\" the type definition containing the typeof slot is referred to as the \"child type\" type definitions without a typeof slot are referred to as a \"root type\"","title":"Other properties"},{"location":"types/","text":"Slot: types data types used in the model URI: linkml:types Domain and Range SchemaDefinition \u2192 0..* TypeDefinition Parents Children Used by SchemaDefinition","title":"Slot: types"},{"location":"types/#slot-types","text":"data types used in the model URI: linkml:types","title":"Slot: types"},{"location":"types/#domain-and-range","text":"SchemaDefinition \u2192 0..* TypeDefinition","title":"Domain and Range"},{"location":"types/#parents","text":"","title":"Parents"},{"location":"types/#children","text":"","title":"Children"},{"location":"types/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"union_of/","text":"Slot: union_of indicates that the domain class consists exactly of the members of the classes in the range URI: linkml:union_of Domain and Range ClassDefinition \u2192 0..* ClassDefinition Parents Children Used by ClassDefinition","title":"Slot: union_of"},{"location":"union_of/#slot-union_of","text":"indicates that the domain class consists exactly of the members of the classes in the range URI: linkml:union_of","title":"Slot: union_of"},{"location":"union_of/#domain-and-range","text":"ClassDefinition \u2192 0..* ClassDefinition","title":"Domain and Range"},{"location":"union_of/#parents","text":"","title":"Parents"},{"location":"union_of/#children","text":"","title":"Children"},{"location":"union_of/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"unique_key_slots/","text":"Slot: unique_key_slots list of slot names that form a key URI: linkml:unique_key_slots Domain and Range UniqueKey \u2192 1..* SlotDefinition Parents Children Used by UniqueKey","title":"Slot: unique_key_slots"},{"location":"unique_key_slots/#slot-unique_key_slots","text":"list of slot names that form a key URI: linkml:unique_key_slots","title":"Slot: unique_key_slots"},{"location":"unique_key_slots/#domain-and-range","text":"UniqueKey \u2192 1..* SlotDefinition","title":"Domain and Range"},{"location":"unique_key_slots/#parents","text":"","title":"Parents"},{"location":"unique_key_slots/#children","text":"","title":"Children"},{"location":"unique_key_slots/#used-by","text":"UniqueKey","title":"Used by"},{"location":"unique_keys/","text":"Slot: unique_keys Set of unique keys for this slot URI: linkml:unique_keys Domain and Range ClassDefinition \u2192 0..* UniqueKey Parents Children Used by Other properties Mappings: owl:hasKey","title":"Slot: unique_keys"},{"location":"unique_keys/#slot-unique_keys","text":"Set of unique keys for this slot URI: linkml:unique_keys","title":"Slot: unique_keys"},{"location":"unique_keys/#domain-and-range","text":"ClassDefinition \u2192 0..* UniqueKey","title":"Domain and Range"},{"location":"unique_keys/#parents","text":"","title":"Parents"},{"location":"unique_keys/#children","text":"","title":"Children"},{"location":"unique_keys/#used-by","text":"","title":"Used by"},{"location":"unique_keys/#other-properties","text":"Mappings: owl:hasKey","title":"Other properties"},{"location":"usage_slot_name/","text":"Slot: usage_slot_name The name of the slot referenced in the slot_usage URI: linkml:usage_slot_name Domain and Range SlotDefinition \u2192 0..1 String Parents Children Used by SlotDefinition","title":"Slot: usage_slot_name"},{"location":"usage_slot_name/#slot-usage_slot_name","text":"The name of the slot referenced in the slot_usage URI: linkml:usage_slot_name","title":"Slot: usage_slot_name"},{"location":"usage_slot_name/#domain-and-range","text":"SlotDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"usage_slot_name/#parents","text":"","title":"Parents"},{"location":"usage_slot_name/#children","text":"","title":"Children"},{"location":"usage_slot_name/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"value/","text":"Slot: value example value URI: linkml:value Domain and Range Example \u2192 0..1 String Parents Children Used by Example Other properties Mappings: skos:example","title":"Slot: value"},{"location":"value/#slot-value","text":"example value URI: linkml:value","title":"Slot: value"},{"location":"value/#domain-and-range","text":"Example \u2192 0..1 String","title":"Domain and Range"},{"location":"value/#parents","text":"","title":"Parents"},{"location":"value/#children","text":"","title":"Children"},{"location":"value/#used-by","text":"Example","title":"Used by"},{"location":"value/#other-properties","text":"Mappings: skos:example","title":"Other properties"},{"location":"value_description/","text":"Slot: description description of what the value is doing URI: linkml:value_description Domain and Range Example \u2192 0..1 String Parents Children Used by Example","title":"Slot: description"},{"location":"value_description/#slot-description","text":"description of what the value is doing URI: linkml:value_description","title":"Slot: description"},{"location":"value_description/#domain-and-range","text":"Example \u2192 0..1 String","title":"Domain and Range"},{"location":"value_description/#parents","text":"","title":"Parents"},{"location":"value_description/#children","text":"","title":"Children"},{"location":"value_description/#used-by","text":"Example","title":"Used by"},{"location":"values_from/","text":"Slot: values_from the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot URI: linkml:values_from Domain and Range Definition \u2192 0..* Uriorcurie Parents Children Used by ClassDefinition Definition SlotDefinition","title":"Slot: values_from"},{"location":"values_from/#slot-values_from","text":"the identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot URI: linkml:values_from","title":"Slot: values_from"},{"location":"values_from/#domain-and-range","text":"Definition \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"values_from/#parents","text":"","title":"Parents"},{"location":"values_from/#children","text":"","title":"Children"},{"location":"values_from/#used-by","text":"ClassDefinition Definition SlotDefinition","title":"Used by"},{"location":"version/","text":"Slot: version particular version of schema URI: linkml:version Domain and Range SchemaDefinition \u2192 0..1 String Parents Children Used by SchemaDefinition Other properties Mappings: pav:version schema:schemaVersion In Subsets: owl","title":"Slot: version"},{"location":"version/#slot-version","text":"particular version of schema URI: linkml:version","title":"Slot: version"},{"location":"version/#domain-and-range","text":"SchemaDefinition \u2192 0..1 String","title":"Domain and Range"},{"location":"version/#parents","text":"","title":"Parents"},{"location":"version/#children","text":"","title":"Children"},{"location":"version/#used-by","text":"SchemaDefinition","title":"Used by"},{"location":"version/#other-properties","text":"Mappings: pav:version schema:schemaVersion In Subsets: owl","title":"Other properties"}]}
\ No newline at end of file
diff --git a/docs/sitemap.xml b/docs/sitemap.xml
index b3eee7b5..8e7a6c57 100644
--- a/docs/sitemap.xml
+++ b/docs/sitemap.xml
@@ -2,822 +2,822 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2021-09-17</lastmod>
+         <lastmod>2021-09-24</lastmod>
          <changefreq>daily</changefreq>
     </url>
 </urlset>
\ No newline at end of file
diff --git a/docs/sitemap.xml.gz b/docs/sitemap.xml.gz
index ff08cb2aae67c9f59959df082b742035f3bec0b7..25bfef4da266da86f2ca82df9230ef7cdba9aa0c 100644
GIT binary patch
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literal 284
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diff --git a/docs/title/index.html b/docs/title/index.html
index c7c0e0ef..9dd1e042 100644
--- a/docs/title/index.html
+++ b/docs/title/index.html
@@ -92,15 +92,22 @@
             <div class="section">
               
                 <h1 id="slot-title">Slot: title</h1>
-<p>the official title of the schema</p>
+<p>the official title of the element</p>
 <p>URI: <a href="https://w3id.org/linkml/title">linkml:title</a></p>
 <h2 id="domain-and-range">Domain and Range</h2>
-<p><a href="../SchemaDefinition/">SchemaDefinition</a> &#8594;  <sub>0..1</sub> <a href="../String/">String</a></p>
+<p><a href="../Element/">Element</a> &#8594;  <sub>0..1</sub> <a href="../String/">String</a></p>
 <h2 id="parents">Parents</h2>
 <h2 id="children">Children</h2>
 <h2 id="used-by">Used by</h2>
 <ul>
+<li><a href="../ClassDefinition/">ClassDefinition</a></li>
+<li><a href="../Definition/">Definition</a></li>
+<li><a href="../Element/">Element</a></li>
+<li><a href="../EnumDefinition/">EnumDefinition</a></li>
 <li><a href="../SchemaDefinition/">SchemaDefinition</a></li>
+<li><a href="../SlotDefinition/">SlotDefinition</a></li>
+<li><a href="../SubsetDefinition/">SubsetDefinition</a></li>
+<li><a href="../TypeDefinition/">TypeDefinition</a></li>
 </ul>
 <h2 id="other-properties">Other properties</h2>
 <table>
diff --git a/linkml_model/annotations.py b/linkml_model/annotations.py
index 3fedcb69..9fb06678 100644
--- a/linkml_model/annotations.py
+++ b/linkml_model/annotations.py
@@ -1,5 +1,5 @@
 # Auto generated from annotations.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-09-17 20:25
+# Generation date: 2021-09-24 02:32
 # Schema: annotations
 #
 # id: https://w3id.org/linkml/annotations
diff --git a/linkml_model/extensions.py b/linkml_model/extensions.py
index 1654026f..d3916aa1 100644
--- a/linkml_model/extensions.py
+++ b/linkml_model/extensions.py
@@ -1,5 +1,5 @@
 # Auto generated from extensions.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-09-17 20:25
+# Generation date: 2021-09-24 02:32
 # Schema: extensions
 #
 # id: https://w3id.org/linkml/extensions
diff --git a/linkml_model/graphql/meta.graphql b/linkml_model/graphql/meta.graphql
index 09ed53b9..c969e027 100644
--- a/linkml_model/graphql/meta.graphql
+++ b/linkml_model/graphql/meta.graphql
@@ -20,6 +20,7 @@ type Annotation implements Annotatable
 type ClassDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -87,6 +88,7 @@ interface CommonMetadata
 interface Definition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -129,6 +131,7 @@ interface Definition
 type Element implements Extensible, Annotatable, CommonMetadata
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -159,6 +162,7 @@ type Element implements Extensible, Annotatable, CommonMetadata
 type EnumDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -246,6 +250,7 @@ type Prefix
 
 type SchemaDefinition
   {
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -272,7 +277,6 @@ type SchemaDefinition
     deprecatedElementHasExactReplacement: Uriorcurie
     deprecatedElementHasPossibleReplacement: Uriorcurie
     id: Uri!
-    title: String
     version: String
     imports: [Uriorcurie]
     license: String
@@ -297,6 +301,7 @@ type SchemaDefinition
 type SlotDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -367,6 +372,7 @@ type SlotDefinition
 type SubsetDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -397,6 +403,7 @@ type SubsetDefinition
 type TypeDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
diff --git a/linkml_model/json/annotations.json b/linkml_model/json/annotations.json
index 5bd89deb..d4c11c15 100644
--- a/linkml_model/json/annotations.json
+++ b/linkml_model/json/annotations.json
@@ -316,9 +316,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "annotations.yaml",
-  "source_file_date": "Fri Sep 17 20:22:48 2021",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
   "source_file_size": 833,
-  "generation_date": "2021-09-17 20:24",
+  "generation_date": "2021-09-24 02:30",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",
diff --git a/linkml_model/json/extensions.json b/linkml_model/json/extensions.json
index 59b07501..7da1246c 100644
--- a/linkml_model/json/extensions.json
+++ b/linkml_model/json/extensions.json
@@ -260,9 +260,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "extensions.yaml",
-  "source_file_date": "Fri Sep 17 20:22:48 2021",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
   "source_file_size": 1043,
-  "generation_date": "2021-09-17 20:24",
+  "generation_date": "2021-09-24 02:31",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",
diff --git a/linkml_model/json/mappings.json b/linkml_model/json/mappings.json
index f20c55b3..12cdf668 100644
--- a/linkml_model/json/mappings.json
+++ b/linkml_model/json/mappings.json
@@ -311,9 +311,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "mappings.yaml",
-  "source_file_date": "Fri Sep 17 20:22:48 2021",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
   "source_file_size": 2656,
-  "generation_date": "2021-09-17 20:24",
+  "generation_date": "2021-09-24 02:30",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",
diff --git a/linkml_model/json/meta.json b/linkml_model/json/meta.json
index 9460fca6..1643c79d 100644
--- a/linkml_model/json/meta.json
+++ b/linkml_model/json/meta.json
@@ -283,6 +283,26 @@
       ],
       "@type": "SlotDefinition"
     },
+    {
+      "name": "title",
+      "definition_uri": "https://w3id.org/linkml/title",
+      "mappings": [
+        "http://purl.org/dc/terms/title"
+      ],
+      "description": "the official title of the element",
+      "in_subset": [
+        "owl"
+      ],
+      "from_schema": "https://w3id.org/linkml/meta",
+      "domain": "Element",
+      "range": "string",
+      "slot_uri": "http://purl.org/dc/terms/title",
+      "owner": "Element",
+      "domain_of": [
+        "Element"
+      ],
+      "@type": "SlotDefinition"
+    },
     {
       "name": "definition_uri",
       "definition_uri": "https://w3id.org/linkml/definition_uri",
@@ -850,26 +870,6 @@
       ],
       "@type": "SlotDefinition"
     },
-    {
-      "name": "title",
-      "definition_uri": "https://w3id.org/linkml/title",
-      "mappings": [
-        "http://purl.org/dc/terms/title"
-      ],
-      "description": "the official title of the schema",
-      "in_subset": [
-        "owl"
-      ],
-      "from_schema": "https://w3id.org/linkml/meta",
-      "domain": "SchemaDefinition",
-      "range": "string",
-      "slot_uri": "http://purl.org/dc/terms/title",
-      "owner": "SchemaDefinition",
-      "domain_of": [
-        "SchemaDefinition"
-      ],
-      "@type": "SlotDefinition"
-    },
     {
       "name": "version",
       "definition_uri": "https://w3id.org/linkml/version",
@@ -2479,6 +2479,7 @@
       ],
       "slots": [
         "name",
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -2522,6 +2523,7 @@
       ],
       "is_a": "Element",
       "slots": [
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -2548,7 +2550,6 @@
         "deprecated_element_has_exact_replacement",
         "deprecated_element_has_possible_replacement",
         "id",
-        "title",
         "version",
         "imports",
         "license",
@@ -2581,6 +2582,7 @@
       "is_a": "Element",
       "slots": [
         "name",
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -2624,6 +2626,7 @@
       "is_a": "Element",
       "slots": [
         "name",
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -2666,6 +2669,7 @@
       "abstract": true,
       "slots": [
         "name",
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -2716,6 +2720,7 @@
       "is_a": "Element",
       "slots": [
         "name",
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -2770,6 +2775,7 @@
       "is_a": "Definition",
       "slots": [
         "name",
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -2858,6 +2864,7 @@
       "is_a": "Definition",
       "slots": [
         "name",
+        "title",
         "id_prefixes",
         "definition_uri",
         "aliases",
@@ -3079,9 +3086,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "meta.yaml",
-  "source_file_date": "Fri Sep 17 20:22:48 2021",
-  "source_file_size": 34577,
-  "generation_date": "2021-09-17 20:24",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
+  "source_file_size": 34568,
+  "generation_date": "2021-09-24 02:30",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",
diff --git a/linkml_model/json/types.json b/linkml_model/json/types.json
index 307ea595..ba4b6430 100644
--- a/linkml_model/json/types.json
+++ b/linkml_model/json/types.json
@@ -169,9 +169,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "types.yaml",
-  "source_file_date": "Fri Sep 17 20:22:48 2021",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
   "source_file_size": 2676,
-  "generation_date": "2021-09-17 20:24",
+  "generation_date": "2021-09-24 02:30",
   "@type": "SchemaDefinition",
   "@context": [
     {
diff --git a/linkml_model/json/validation.json b/linkml_model/json/validation.json
new file mode 100644
index 00000000..c84090de
--- /dev/null
+++ b/linkml_model/json/validation.json
@@ -0,0 +1,450 @@
+{
+  "name": "reporting",
+  "description": "A datamodel for reports on data",
+  "id": "https://w3id.org/linkml/reporting",
+  "title": "LinkML Report Metamodel",
+  "imports": [
+    "linkml:types"
+  ],
+  "license": "https://creativecommons.org/publicdomain/zero/1.0/",
+  "prefixes": [
+    {
+      "prefix_prefix": "linkml",
+      "prefix_reference": "https://w3id.org/linkml/"
+    },
+    {
+      "prefix_prefix": "reporting",
+      "prefix_reference": "https://w3id.org/linkml/report"
+    },
+    {
+      "prefix_prefix": "skos",
+      "prefix_reference": "http://www.w3.org/2004/02/skos/core#"
+    },
+    {
+      "prefix_prefix": "pav",
+      "prefix_reference": "http://purl.org/pav/"
+    },
+    {
+      "prefix_prefix": "schema",
+      "prefix_reference": "http://schema.org/"
+    },
+    {
+      "prefix_prefix": "sh",
+      "prefix_reference": "https://w3id.org/shacl/"
+    }
+  ],
+  "emit_prefixes": [
+    "linkml",
+    "rdf",
+    "rdfs",
+    "xsd",
+    "owl"
+  ],
+  "default_curi_maps": [
+    "semweb_context"
+  ],
+  "default_prefix": "reporting",
+  "default_range": "string",
+  "types": [
+    {
+      "name": "string",
+      "definition_uri": "https://w3id.org/linkml/String",
+      "description": "A character string",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "str",
+      "uri": "http://www.w3.org/2001/XMLSchema#string",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "integer",
+      "definition_uri": "https://w3id.org/linkml/Integer",
+      "description": "An integer",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "int",
+      "uri": "http://www.w3.org/2001/XMLSchema#integer",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "boolean",
+      "definition_uri": "https://w3id.org/linkml/Boolean",
+      "description": "A binary (true or false) value",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "Bool",
+      "uri": "http://www.w3.org/2001/XMLSchema#boolean",
+      "repr": "bool",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "float",
+      "definition_uri": "https://w3id.org/linkml/Float",
+      "description": "A real number that conforms to the xsd:float specification",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "float",
+      "uri": "http://www.w3.org/2001/XMLSchema#float",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "double",
+      "definition_uri": "https://w3id.org/linkml/Double",
+      "description": "A real number that conforms to the xsd:double specification",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "float",
+      "uri": "http://www.w3.org/2001/XMLSchema#double",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "decimal",
+      "definition_uri": "https://w3id.org/linkml/Decimal",
+      "description": "A real number with arbitrary precision that conforms to the xsd:decimal specification",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "Decimal",
+      "uri": "http://www.w3.org/2001/XMLSchema#decimal",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "time",
+      "definition_uri": "https://w3id.org/linkml/Time",
+      "description": "A time object represents a (local) time of day, independent of any particular day",
+      "notes": [
+        "URI is dateTime because OWL reasoners don't work with straight date or time"
+      ],
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "XSDTime",
+      "uri": "http://www.w3.org/2001/XMLSchema#dateTime",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "date",
+      "definition_uri": "https://w3id.org/linkml/Date",
+      "description": "a date (year, month and day) in an idealized calendar",
+      "notes": [
+        "URI is dateTime because OWL reasoners don't work with straight date or time"
+      ],
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "XSDDate",
+      "uri": "http://www.w3.org/2001/XMLSchema#date",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "datetime",
+      "definition_uri": "https://w3id.org/linkml/Datetime",
+      "description": "The combination of a date and time",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "XSDDateTime",
+      "uri": "http://www.w3.org/2001/XMLSchema#dateTime",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "uriorcurie",
+      "definition_uri": "https://w3id.org/linkml/Uriorcurie",
+      "description": "a URI or a CURIE",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "URIorCURIE",
+      "uri": "http://www.w3.org/2001/XMLSchema#anyURI",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "uri",
+      "definition_uri": "https://w3id.org/linkml/Uri",
+      "description": "a complete URI",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "URI",
+      "uri": "http://www.w3.org/2001/XMLSchema#anyURI",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "ncname",
+      "definition_uri": "https://w3id.org/linkml/Ncname",
+      "description": "Prefix part of CURIE",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "NCName",
+      "uri": "http://www.w3.org/2001/XMLSchema#string",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "objectidentifier",
+      "definition_uri": "https://w3id.org/linkml/Objectidentifier",
+      "description": "A URI or CURIE that represents an object in the model.",
+      "comments": [
+        "Used for inheritence and type checking"
+      ],
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "ElementIdentifier",
+      "uri": "http://www.w3.org/ns/shex#iri",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    },
+    {
+      "name": "nodeidentifier",
+      "definition_uri": "https://w3id.org/linkml/Nodeidentifier",
+      "description": "A URI, CURIE or BNODE that represents a node in a model.",
+      "from_schema": "https://w3id.org/linkml/types",
+      "imported_from": "linkml:types",
+      "base": "NodeIdentifier",
+      "uri": "http://www.w3.org/ns/shex#nonLiteral",
+      "repr": "str",
+      "@type": "TypeDefinition"
+    }
+  ],
+  "enums": [
+    {
+      "name": "problem_type",
+      "definition_uri": "https://w3id.org/linkml/reportProblemType",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "permissible_values": [
+        {
+          "text": "undeclared_slot",
+          "description": "Applies when a slot is used in data but the slot is undeclared in the datamodel"
+        },
+        {
+          "text": "inapplicable_slot",
+          "description": "Applies when a slot is used in an instance of a class where the slot is not applicable for that class"
+        },
+        {
+          "text": "missing_slot_value",
+          "description": "Applies when an instance of a class has a required slot which is not filled in"
+        },
+        {
+          "text": "slot_range_violation",
+          "description": "Applies when the value of a slot is inconsistent with the declared range"
+        },
+        {
+          "text": "parsing_error",
+          "description": "The data could not be parsed"
+        }
+      ]
+    },
+    {
+      "name": "severity_options",
+      "definition_uri": "https://w3id.org/linkml/reportSeverityOptions",
+      "exact_mappings": [
+        "sh:Severity"
+      ],
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "permissible_values": [
+        {
+          "text": "FATAL"
+        },
+        {
+          "text": "ERROR",
+          "meaning": "sh:Violation"
+        },
+        {
+          "text": "WARNING",
+          "meaning": "sh:Warning"
+        },
+        {
+          "text": "INFO",
+          "meaning": "sh:Info"
+        }
+      ]
+    }
+  ],
+  "slots": [
+    {
+      "name": "type",
+      "definition_uri": "https://w3id.org/linkml/reporttype",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "problem_type",
+      "slot_uri": "https://w3id.org/linkml/reporttype",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "subject",
+      "definition_uri": "https://w3id.org/linkml/reportsubject",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "nodeidentifier",
+      "slot_uri": "https://w3id.org/linkml/reportsubject",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "instantiates",
+      "definition_uri": "https://w3id.org/linkml/reportinstantiates",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "nodeidentifier",
+      "slot_uri": "https://w3id.org/linkml/reportinstantiates",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "predicate",
+      "definition_uri": "https://w3id.org/linkml/reportpredicate",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "nodeidentifier",
+      "slot_uri": "https://w3id.org/linkml/reportpredicate",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "object",
+      "definition_uri": "https://w3id.org/linkml/reportobject",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "nodeidentifier",
+      "slot_uri": "https://w3id.org/linkml/reportobject",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "object_str",
+      "definition_uri": "https://w3id.org/linkml/reportobject_str",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "string",
+      "slot_uri": "https://w3id.org/linkml/reportobject_str",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "source",
+      "definition_uri": "https://w3id.org/linkml/reportsource",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "nodeidentifier",
+      "slot_uri": "https://w3id.org/linkml/reportsource",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "severity",
+      "definition_uri": "https://w3id.org/linkml/reportseverity",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "severity_options",
+      "slot_uri": "https://w3id.org/linkml/reportseverity",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "info",
+      "definition_uri": "https://w3id.org/linkml/reportinfo",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "string",
+      "slot_uri": "https://w3id.org/linkml/reportinfo",
+      "owner": "ValidationResult",
+      "domain_of": [
+        "ValidationResult"
+      ],
+      "@type": "SlotDefinition"
+    },
+    {
+      "name": "validationReport__results",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "range": "ValidationResult",
+      "slot_uri": "https://w3id.org/linkml/reportresults",
+      "multivalued": true,
+      "inlined": true,
+      "alias": "results",
+      "owner": "ValidationReport",
+      "domain_of": [
+        "ValidationReport"
+      ],
+      "@type": "SlotDefinition"
+    }
+  ],
+  "classes": [
+    {
+      "name": "ValidationReport",
+      "definition_uri": "https://w3id.org/linkml/reportValidationReport",
+      "mappings": [
+        "sh:ValidationReport"
+      ],
+      "description": "A report object",
+      "todos": [
+        "add prov object"
+      ],
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "slots": [
+        "validationReport__results"
+      ],
+      "slot_usage": {},
+      "attributes": [
+        {
+          "name": "results",
+          "range": "ValidationResult",
+          "multivalued": true,
+          "@type": "SlotDefinition"
+        }
+      ],
+      "class_uri": "https://w3id.org/shacl/ValidationReport",
+      "@type": "ClassDefinition"
+    },
+    {
+      "name": "ValidationResult",
+      "definition_uri": "https://w3id.org/linkml/reportValidationResult",
+      "mappings": [
+        "sh:ValidationResult"
+      ],
+      "description": "An individual result arising from validation of a data instance using a particular rule",
+      "from_schema": "https://w3id.org/linkml/reporting",
+      "slots": [
+        "type",
+        "severity",
+        "subject",
+        "instantiates",
+        "predicate",
+        "object",
+        "object_str",
+        "source",
+        "info"
+      ],
+      "slot_usage": {},
+      "class_uri": "https://w3id.org/shacl/ValidationResult",
+      "@type": "ClassDefinition"
+    }
+  ],
+  "metamodel_version": "1.7.0",
+  "source_file": "validation.yaml",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
+  "source_file_size": 2645,
+  "generation_date": "2021-09-24 02:31",
+  "@type": "SchemaDefinition",
+  "@context": [
+    "https://w3id.org/linkml/types.context.jsonld",
+    {
+      "@base": "https://w3id.org/linkml/report"
+    }
+  ]
+}
+
diff --git a/linkml_model/jsonld/annotations.context.jsonld b/linkml_model/jsonld/annotations.context.jsonld
index 49915eb6..a619bf21 100644
--- a/linkml_model/jsonld/annotations.context.jsonld
+++ b/linkml_model/jsonld/annotations.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",
diff --git a/linkml_model/jsonld/annotations.model.context.jsonld b/linkml_model/jsonld/annotations.model.context.jsonld
index 49915eb6..a619bf21 100644
--- a/linkml_model/jsonld/annotations.model.context.jsonld
+++ b/linkml_model/jsonld/annotations.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",
diff --git a/linkml_model/jsonld/extensions.context.jsonld b/linkml_model/jsonld/extensions.context.jsonld
index 22f6800c..b9b9c531 100644
--- a/linkml_model/jsonld/extensions.context.jsonld
+++ b/linkml_model/jsonld/extensions.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",
diff --git a/linkml_model/jsonld/extensions.model.context.jsonld b/linkml_model/jsonld/extensions.model.context.jsonld
index 22f6800c..b9b9c531 100644
--- a/linkml_model/jsonld/extensions.model.context.jsonld
+++ b/linkml_model/jsonld/extensions.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",
diff --git a/linkml_model/jsonld/mappings.context.jsonld b/linkml_model/jsonld/mappings.context.jsonld
index ac1c5678..952683ba 100644
--- a/linkml_model/jsonld/mappings.context.jsonld
+++ b/linkml_model/jsonld/mappings.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",
diff --git a/linkml_model/jsonld/mappings.model.context.jsonld b/linkml_model/jsonld/mappings.model.context.jsonld
index ac1c5678..952683ba 100644
--- a/linkml_model/jsonld/mappings.model.context.jsonld
+++ b/linkml_model/jsonld/mappings.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",
diff --git a/linkml_model/jsonld/meta.context.jsonld b/linkml_model/jsonld/meta.context.jsonld
index 630037fd..30f2feb1 100644
--- a/linkml_model/jsonld/meta.context.jsonld
+++ b/linkml_model/jsonld/meta.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",
diff --git a/linkml_model/jsonld/meta.model.context.jsonld b/linkml_model/jsonld/meta.model.context.jsonld
index 630037fd..30f2feb1 100644
--- a/linkml_model/jsonld/meta.model.context.jsonld
+++ b/linkml_model/jsonld/meta.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",
diff --git a/linkml_model/jsonld/types.context.jsonld b/linkml_model/jsonld/types.context.jsonld
index e9d23f6e..2bee7fa3 100644
--- a/linkml_model/jsonld/types.context.jsonld
+++ b/linkml_model/jsonld/types.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "shex": "http://www.w3.org/ns/shex#",
diff --git a/linkml_model/jsonld/types.model.context.jsonld b/linkml_model/jsonld/types.model.context.jsonld
index e9d23f6e..2bee7fa3 100644
--- a/linkml_model/jsonld/types.model.context.jsonld
+++ b/linkml_model/jsonld/types.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-17 20:24\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "shex": "http://www.w3.org/ns/shex#",
diff --git a/linkml_model/jsonld/validation.context.jsonld b/linkml_model/jsonld/validation.context.jsonld
new file mode 100644
index 00000000..332a7bdd
--- /dev/null
+++ b/linkml_model/jsonld/validation.context.jsonld
@@ -0,0 +1,60 @@
+{
+   "_comments": "Auto generated from validation.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: reporting\n    \n    id: https://w3id.org/linkml/reporting\n    description: A datamodel for reports on data\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "@context": {
+      "linkml": "https://w3id.org/linkml/",
+      "owl": "http://www.w3.org/2002/07/owl#",
+      "pav": "http://purl.org/pav/",
+      "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+      "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+      "reporting": {
+         "@id": "https://w3id.org/linkml/report",
+         "@prefix": true
+      },
+      "schema": "http://schema.org/",
+      "sh": "https://w3id.org/shacl/",
+      "skos": "http://www.w3.org/2004/02/skos/core#",
+      "xsd": "http://www.w3.org/2001/XMLSchema#",
+      "@vocab": "https://w3id.org/linkml/report",
+      "instantiates": {
+         "@type": "shex:nonLiteral"
+      },
+      "object": {
+         "@type": "shex:nonLiteral"
+      },
+      "predicate": {
+         "@type": "shex:nonLiteral"
+      },
+      "severity": {
+         "@context": {
+            "@vocab": "@null",
+            "text": "skos:notation",
+            "description": "skos:prefLabel",
+            "meaning": "@id"
+         }
+      },
+      "source": {
+         "@type": "shex:nonLiteral"
+      },
+      "subject": {
+         "@type": "shex:nonLiteral"
+      },
+      "type": {
+         "@context": {
+            "@vocab": "@null",
+            "text": "skos:notation",
+            "description": "skos:prefLabel",
+            "meaning": "@id"
+         }
+      },
+      "results": {
+         "@type": "@id"
+      },
+      "ValidationReport": {
+         "@id": "sh:ValidationReport"
+      },
+      "ValidationResult": {
+         "@id": "sh:ValidationResult"
+      }
+   }
+}
+
diff --git a/linkml_model/jsonld/validation.model.context.jsonld b/linkml_model/jsonld/validation.model.context.jsonld
new file mode 100644
index 00000000..332a7bdd
--- /dev/null
+++ b/linkml_model/jsonld/validation.model.context.jsonld
@@ -0,0 +1,60 @@
+{
+   "_comments": "Auto generated from validation.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-09-24 02:31\n    Schema: reporting\n    \n    id: https://w3id.org/linkml/reporting\n    description: A datamodel for reports on data\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "@context": {
+      "linkml": "https://w3id.org/linkml/",
+      "owl": "http://www.w3.org/2002/07/owl#",
+      "pav": "http://purl.org/pav/",
+      "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+      "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+      "reporting": {
+         "@id": "https://w3id.org/linkml/report",
+         "@prefix": true
+      },
+      "schema": "http://schema.org/",
+      "sh": "https://w3id.org/shacl/",
+      "skos": "http://www.w3.org/2004/02/skos/core#",
+      "xsd": "http://www.w3.org/2001/XMLSchema#",
+      "@vocab": "https://w3id.org/linkml/report",
+      "instantiates": {
+         "@type": "shex:nonLiteral"
+      },
+      "object": {
+         "@type": "shex:nonLiteral"
+      },
+      "predicate": {
+         "@type": "shex:nonLiteral"
+      },
+      "severity": {
+         "@context": {
+            "@vocab": "@null",
+            "text": "skos:notation",
+            "description": "skos:prefLabel",
+            "meaning": "@id"
+         }
+      },
+      "source": {
+         "@type": "shex:nonLiteral"
+      },
+      "subject": {
+         "@type": "shex:nonLiteral"
+      },
+      "type": {
+         "@context": {
+            "@vocab": "@null",
+            "text": "skos:notation",
+            "description": "skos:prefLabel",
+            "meaning": "@id"
+         }
+      },
+      "results": {
+         "@type": "@id"
+      },
+      "ValidationReport": {
+         "@id": "sh:ValidationReport"
+      },
+      "ValidationResult": {
+         "@id": "sh:ValidationResult"
+      }
+   }
+}
+
diff --git a/linkml_model/jsonschema/meta.schema.json b/linkml_model/jsonschema/meta.schema.json
index 4cc61c45..4c801824 100644
--- a/linkml_model/jsonschema/meta.schema.json
+++ b/linkml_model/jsonschema/meta.schema.json
@@ -291,6 +291,10 @@
                "description": "rdfs:subClassOf to be emitted in OWL generation",
                "type": "string"
             },
+            "title": {
+               "description": "the official title of the element",
+               "type": "string"
+            },
             "todos": {
                "description": "Outstanding issue that needs resolution",
                "items": {
@@ -498,6 +502,10 @@
                },
                "type": "array"
             },
+            "title": {
+               "description": "the official title of the element",
+               "type": "string"
+            },
             "todos": {
                "description": "Outstanding issue that needs resolution",
                "items": {
@@ -966,7 +974,7 @@
                "type": "array"
             },
             "title": {
-               "description": "the official title of the schema",
+               "description": "the official title of the element",
                "type": "string"
             },
             "todos": {
@@ -1307,6 +1315,10 @@
                "description": "True means that any instance of  d s r implies that there is also an instance of r s d",
                "type": "boolean"
             },
+            "title": {
+               "description": "the official title of the element",
+               "type": "string"
+            },
             "todos": {
                "description": "Outstanding issue that needs resolution",
                "items": {
@@ -1484,6 +1496,10 @@
                },
                "type": "array"
             },
+            "title": {
+               "description": "the official title of the element",
+               "type": "string"
+            },
             "todos": {
                "description": "Outstanding issue that needs resolution",
                "items": {
@@ -1662,6 +1678,10 @@
                },
                "type": "array"
             },
+            "title": {
+               "description": "the official title of the element",
+               "type": "string"
+            },
             "todos": {
                "description": "Outstanding issue that needs resolution",
                "items": {
diff --git a/linkml_model/jsonschema/validation.schema.json b/linkml_model/jsonschema/validation.schema.json
new file mode 100644
index 00000000..6c9c0d6d
--- /dev/null
+++ b/linkml_model/jsonschema/validation.schema.json
@@ -0,0 +1,85 @@
+{
+   "$defs": {
+      "ProblemType": {
+         "description": "",
+         "enum": [
+            "undeclared_slot",
+            "inapplicable_slot",
+            "missing_slot_value",
+            "slot_range_violation",
+            "parsing_error"
+         ],
+         "title": "ProblemType",
+         "type": "string"
+      },
+      "SeverityOptions": {
+         "description": "",
+         "enum": [
+            "FATAL",
+            "ERROR",
+            "WARNING",
+            "INFO"
+         ],
+         "title": "SeverityOptions",
+         "type": "string"
+      },
+      "ValidationReport": {
+         "additionalProperties": false,
+         "description": "A report object",
+         "properties": {
+            "results": {
+               "items": {
+                  "$ref": "#/$defs/ValidationResult"
+               },
+               "type": "array"
+            }
+         },
+         "required": [],
+         "title": "ValidationReport",
+         "type": "object"
+      },
+      "ValidationResult": {
+         "additionalProperties": false,
+         "description": "An individual result arising from validation of a data instance using a particular rule",
+         "properties": {
+            "info": {
+               "type": "string"
+            },
+            "instantiates": {
+               "type": "string"
+            },
+            "object": {
+               "type": "string"
+            },
+            "object_str": {
+               "type": "string"
+            },
+            "predicate": {
+               "type": "string"
+            },
+            "severity": {
+               "$ref": "#/$defs/SeverityOptions"
+            },
+            "source": {
+               "type": "string"
+            },
+            "subject": {
+               "type": "string"
+            },
+            "type": {
+               "$ref": "#/$defs/ProblemType"
+            }
+         },
+         "required": [],
+         "title": "ValidationResult",
+         "type": "object"
+      }
+   },
+   "$id": "https://w3id.org/linkml/reporting",
+   "$schema": "http://json-schema.org/draft-07/schema#",
+   "additionalProperties": true,
+   "properties": {},
+   "title": "reporting",
+   "type": "object"
+}
+
diff --git a/linkml_model/mappings.py b/linkml_model/mappings.py
index 0ea8acfa..79d2686c 100644
--- a/linkml_model/mappings.py
+++ b/linkml_model/mappings.py
@@ -1,5 +1,5 @@
 # Auto generated from mappings.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-09-17 20:25
+# Generation date: 2021-09-24 02:32
 # Schema: mappings
 #
 # id: https://w3id.org/linkml/mappings
diff --git a/linkml_model/meta.py b/linkml_model/meta.py
index 3b192bc2..4d439bd6 100644
--- a/linkml_model/meta.py
+++ b/linkml_model/meta.py
@@ -1,5 +1,5 @@
 # Auto generated from meta.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-09-17 20:25
+# Generation date: 2021-09-24 02:32
 # Schema: meta
 #
 # id: https://w3id.org/linkml/meta
@@ -185,6 +185,7 @@ class Element(YAMLRoot):
     class_model_uri: ClassVar[URIRef] = LINKML.Element
 
     name: Union[str, ElementName] = None
+    title: Optional[str] = None
     id_prefixes: Optional[Union[Union[str, NCName], List[Union[str, NCName]]]] = empty_list()
     definition_uri: Optional[Union[str, URIorCURIE]] = None
     aliases: Optional[Union[str, List[str]]] = empty_list()
@@ -217,6 +218,9 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
         if not isinstance(self.name, ElementName):
             self.name = ElementName(self.name)
 
+        if self.title is not None and not isinstance(self.title, str):
+            self.title = str(self.title)
+
         if not isinstance(self.id_prefixes, list):
             self.id_prefixes = [self.id_prefixes] if self.id_prefixes is not None else []
         self.id_prefixes = [v if isinstance(v, NCName) else NCName(v) for v in self.id_prefixes]
@@ -319,7 +323,6 @@ class SchemaDefinition(Element):
 
     name: Union[str, SchemaDefinitionName] = None
     id: Union[str, URI] = None
-    title: Optional[str] = None
     version: Optional[str] = None
     imports: Optional[Union[Union[str, URIorCURIE], List[Union[str, URIorCURIE]]]] = empty_list()
     license: Optional[str] = None
@@ -352,9 +355,6 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
         if not isinstance(self.id, URI):
             self.id = URI(self.id)
 
-        if self.title is not None and not isinstance(self.title, str):
-            self.title = str(self.title)
-
         if self.version is not None and not isinstance(self.version, str):
             self.version = str(self.version)
 
diff --git a/linkml_model/owl/meta.owl.ttl b/linkml_model/owl/meta.owl.ttl
index b71dc875..256b2791 100644
--- a/linkml_model/owl/meta.owl.ttl
+++ b/linkml_model/owl/meta.owl.ttl
@@ -128,11 +128,11 @@ linkml:meta a owl:Ontology ;
     dcterms:title "LinkML Schema Metamodel" ;
     pav:version "2.0.0" ;
     skos:definition "A metamodel for defining linked open data schemas" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:metamodel_version "1.7.0" ;
     linkml:source_file "meta.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
-    linkml:source_file_size 34577 .
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
+    linkml:source_file_size 34568 .
 
 linkml:permissible_value_is_a a owl:ObjectProperty,
         linkml:SlotDefinition ;
@@ -807,9 +807,9 @@ linkml:text a owl:ObjectProperty,
 linkml:title a owl:ObjectProperty,
         linkml:SlotDefinition ;
     rdfs:label "title" ;
-    rdfs:domain linkml:SchemaDefinition ;
+    rdfs:domain linkml:Element ;
     rdfs:range linkml:String ;
-    skos:definition "the official title of the schema" .
+    skos:definition "the official title of the element" .
 
 linkml:tree_root a owl:ObjectProperty,
         linkml:SlotDefinition ;
@@ -869,67 +869,67 @@ linkml:CommonMetadata a owl:Class,
     rdfs:label "common_metadata" ;
     rdfs:subClassOf [ a owl:Restriction ;
             owl:allValuesFrom linkml:String ;
-            owl:onProperty linkml:notes ],
+            owl:onProperty linkml:comments ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:imported_from ],
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:deprecated_element_has_exact_replacement ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:String ;
-            owl:onProperty linkml:todos ],
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:see_also ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:deprecated ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:SubsetDefinition ;
-            owl:onProperty linkml:in_subset ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:AltDescription ;
             owl:onProperty linkml:alt_descriptions ],
+        [ a owl:Restriction ;
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Uri ;
+            owl:onProperty linkml:from_schema ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:String ;
-            owl:onProperty linkml:comments ],
+            owl:onProperty linkml:todos ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
             owl:onProperty linkml:deprecated_element_has_possible_replacement ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:SubsetDefinition ;
+            owl:onProperty linkml:in_subset ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:Example ;
             owl:onProperty linkml:examples ],
         [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:deprecated_element_has_exact_replacement ],
-        [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uri ;
-            owl:onProperty linkml:from_schema ],
+            owl:allValuesFrom linkml:String ;
+            owl:onProperty linkml:notes ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:description ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:see_also ],
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:imported_from ],
         linkml:mixin ;
     skos:definition "Generic metadata shared across definitions" .
 
 linkml:UniqueKey a owl:Class,
         linkml:ClassDefinition ;
     rdfs:label "unique_key" ;
-    rdfs:subClassOf [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Extension ;
-            owl:onProperty linkml:extensions ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Annotation ;
-            owl:onProperty linkml:annotations ],
-        [ a owl:Class ;
+    rdfs:subClassOf [ a owl:Class ;
             owl:intersectionOf ( [ a owl:Restriction ;
                         owl:allValuesFrom linkml:SlotDefinition ;
                         owl:onProperty linkml:unique_key_slots ] [ a owl:Restriction ;
                         owl:onProperty linkml:unique_key_slots ;
                         owl:someValuesFrom linkml:SlotDefinition ] ) ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Extension ;
+            owl:onProperty linkml:extensions ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Annotation ;
+            owl:onProperty linkml:annotations ],
         linkml:Annotatable,
         linkml:Extensible ;
     skos:definition "a collection of slots whose values uniquely identify an instance of a class" .
@@ -1066,12 +1066,12 @@ linkml:LocalName a owl:Class,
         linkml:ClassDefinition ;
     rdfs:label "local_name" ;
     rdfs:subClassOf [ a owl:Restriction ;
-            owl:onClass linkml:Ncname ;
-            owl:onProperty linkml:local_name_source ;
-            owl:qualifiedCardinality 1 ],
-        [ a owl:Restriction ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:local_name_value ;
+            owl:qualifiedCardinality 1 ],
+        [ a owl:Restriction ;
+            owl:onClass linkml:Ncname ;
+            owl:onProperty linkml:local_name_source ;
             owl:qualifiedCardinality 1 ] ;
     skos:definition "an attributed label" .
 
@@ -1195,24 +1195,24 @@ linkml:EnumDefinition a owl:Class,
         linkml:ClassDefinition ;
     rdfs:label "enum_definition" ;
     rdfs:subClassOf [ a owl:Restriction ;
-            owl:allValuesFrom linkml:PermissibleValue ;
-            owl:onProperty linkml:permissible_values ],
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:code_set ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
-            owl:onProperty linkml:code_set_tag ],
+            owl:onProperty linkml:code_set_version ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
-            owl:onProperty linkml:code_set_version ],
+            owl:onProperty linkml:code_set_tag ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass <http://UNKNOWN.org/pv_formula_options> ;
             owl:onProperty linkml:pv_formula ],
         [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:code_set ],
+            owl:allValuesFrom linkml:PermissibleValue ;
+            owl:onProperty linkml:permissible_values ],
         linkml:Element ;
     skos:definition "List of values that constrain the range of a slot" .
 
@@ -1254,16 +1254,16 @@ linkml:Extension a owl:Class,
         linkml:ClassDefinition ;
     rdfs:label "extension" ;
     rdfs:subClassOf [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Extension ;
-            owl:onProperty linkml:extensions ],
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:tag ;
+            owl:qualifiedCardinality 1 ],
         [ a owl:Restriction ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:value ;
             owl:qualifiedCardinality 1 ],
         [ a owl:Restriction ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:tag ;
-            owl:qualifiedCardinality 1 ] ;
+            owl:allValuesFrom linkml:Extension ;
+            owl:onProperty linkml:extensions ] ;
     skos:definition "a tag/value pair used to add non-model information to an entry" .
 
 linkml:Ncname a owl:Class,
@@ -1279,71 +1279,71 @@ linkml:PermissibleValue a owl:Class,
         linkml:ClassDefinition ;
     rdfs:label "permissible_value" ;
     rdfs:subClassOf [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:see_also ],
+        [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:description ],
         [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uri ;
-            owl:onProperty linkml:from_schema ],
+            owl:allValuesFrom linkml:PermissibleValue ;
+            owl:onProperty linkml:mixins ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Annotation ;
-            owl:onProperty linkml:annotations ],
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:deprecated ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Example ;
-            owl:onProperty linkml:examples ],
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:PermissibleValue ;
+            owl:onProperty linkml:is_a ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:meaning ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:SubsetDefinition ;
-            owl:onProperty linkml:in_subset ],
+            owl:onProperty linkml:deprecated_element_has_exact_replacement ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:deprecated ],
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:deprecated_element_has_possible_replacement ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:String ;
             owl:onProperty linkml:comments ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Extension ;
-            owl:onProperty linkml:extensions ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:text ;
+            owl:qualifiedCardinality 1 ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:PermissibleValue ;
-            owl:onProperty linkml:is_a ],
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:meaning ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:deprecated_element_has_exact_replacement ],
+            owl:onClass linkml:Uri ;
+            owl:onProperty linkml:from_schema ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Example ;
+            owl:onProperty linkml:examples ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:imported_from ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:PermissibleValue ;
-            owl:onProperty linkml:mixins ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:see_also ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:String ;
             owl:onProperty linkml:notes ],
         [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:deprecated_element_has_possible_replacement ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:String ;
-            owl:onProperty linkml:todos ],
+            owl:allValuesFrom linkml:Extension ;
+            owl:onProperty linkml:extensions ],
         [ a owl:Restriction ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:text ;
-            owl:qualifiedCardinality 1 ],
+            owl:allValuesFrom linkml:SubsetDefinition ;
+            owl:onProperty linkml:in_subset ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:AltDescription ;
             owl:onProperty linkml:alt_descriptions ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Annotation ;
+            owl:onProperty linkml:annotations ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:String ;
+            owl:onProperty linkml:todos ],
         linkml:Annotatable,
         linkml:CommonMetadata,
         linkml:Extensible ;
@@ -1357,30 +1357,15 @@ linkml:Definition a owl:Class,
     rdfs:label "definition" ;
     rdfs:seeAlso "https://en.wikipedia.org/wiki/Data_element_definition" ;
     rdfs:subClassOf [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:status ],
-        [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:string_serialization ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Definition ;
-            owl:onProperty linkml:apply_to ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:Definition ;
             owl:onProperty linkml:mixins ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:values_from ],
-        [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Datetime ;
-            owl:onProperty linkml:created_on ],
-        [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Definition ;
-            owl:onProperty linkml:is_a ],
+            owl:allValuesFrom linkml:Definition ;
+            owl:onProperty linkml:apply_to ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
@@ -1393,6 +1378,10 @@ linkml:Definition a owl:Class,
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
             owl:onProperty linkml:created_by ],
+        [ a owl:Restriction ;
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Definition ;
+            owl:onProperty linkml:is_a ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
@@ -1401,6 +1390,17 @@ linkml:Definition a owl:Class,
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
             owl:onProperty linkml:mixin ],
+        [ a owl:Restriction ;
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Datetime ;
+            owl:onProperty linkml:created_on ],
+        [ a owl:Restriction ;
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:status ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:values_from ],
         linkml:Element ;
     skos:definition "base class for definitions" .
 
@@ -1409,65 +1409,58 @@ linkml:SchemaDefinition a owl:Class,
     rdfs:label "schema_definition" ;
     rdfs:seeAlso "https://en.wikipedia.org/wiki/Data_dictionary" ;
     rdfs:subClassOf [ a owl:Restriction ;
+            owl:allValuesFrom linkml:TypeDefinition ;
+            owl:onProperty linkml:types ],
+        [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:version ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:String ;
-            owl:onProperty linkml:default_curi_maps ],
-        [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Integer ;
-            owl:onProperty linkml:source_file_size ],
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:imports ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:ClassDefinition ;
-            owl:onProperty linkml:classes ],
+            owl:allValuesFrom linkml:Ncname ;
+            owl:onProperty linkml:emit_prefixes ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:SubsetDefinition ;
-            owl:onProperty linkml:subsets ],
+            owl:allValuesFrom linkml:Prefix ;
+            owl:onProperty linkml:prefixes ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Datetime ;
-            owl:onProperty linkml:generation_date ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:source_file ],
+        [ a owl:Restriction ;
+            owl:onClass linkml:Ncname ;
+            owl:onProperty linkml:name ;
+            owl:qualifiedCardinality 1 ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
-            owl:onProperty linkml:source_file ],
+            owl:onProperty linkml:metamodel_version ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Datetime ;
             owl:onProperty linkml:source_file_date ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:license ],
+            owl:onClass linkml:Datetime ;
+            owl:onProperty linkml:generation_date ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:SlotDefinition ;
-            owl:onProperty linkml:slots ],
+            owl:allValuesFrom linkml:String ;
+            owl:onProperty linkml:default_curi_maps ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:TypeDefinition ;
-            owl:onProperty linkml:types ],
+            owl:allValuesFrom linkml:SubsetDefinition ;
+            owl:onProperty linkml:subsets ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
-            owl:onProperty linkml:default_prefix ],
+            owl:onProperty linkml:license ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:EnumDefinition ;
             owl:onProperty linkml:enums ],
-        [ a owl:Restriction ;
-            owl:onClass linkml:Ncname ;
-            owl:onProperty linkml:name ;
-            owl:qualifiedCardinality 1 ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:metamodel_version ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Ncname ;
-            owl:onProperty linkml:emit_prefixes ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:imports ],
+            owl:onClass linkml:Integer ;
+            owl:onProperty linkml:source_file_size ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:TypeDefinition ;
@@ -1475,10 +1468,13 @@ linkml:SchemaDefinition a owl:Class,
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
-            owl:onProperty linkml:title ],
+            owl:onProperty linkml:default_prefix ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Prefix ;
-            owl:onProperty linkml:prefixes ],
+            owl:allValuesFrom linkml:SlotDefinition ;
+            owl:onProperty linkml:slots ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:ClassDefinition ;
+            owl:onProperty linkml:classes ],
         [ a owl:Restriction ;
             owl:onClass linkml:Uri ;
             owl:onProperty linkml:id ;
@@ -1492,24 +1488,24 @@ linkml:TypeDefinition a owl:Class,
     rdfs:label "type_definition" ;
     rdfs:subClassOf [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:repr ],
+            owl:onClass linkml:TypeDefinition ;
+            owl:onProperty linkml:typeof ],
+        [ a owl:Restriction ;
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:uri ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:pattern ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:TypeDefinition ;
-            owl:onProperty linkml:typeof ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:repr ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:base ],
-        [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:uri ],
         linkml:Element ;
     skos:definition "A data type definition." .
 
@@ -1518,22 +1514,36 @@ linkml:Element a owl:Class,
     rdfs:label "element" ;
     rdfs:seeAlso "https://en.wikipedia.org/wiki/Data_element" ;
     rdfs:subClassOf [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:see_also ],
+        [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uri ;
             owl:onProperty linkml:from_schema ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:broad_mappings ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:narrow_mappings ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:LocalName ;
+            owl:onProperty linkml:local_names ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:imported_from ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:exact_mappings ],
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:deprecated ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:String ;
-            owl:onProperty linkml:notes ],
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:title ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Annotation ;
-            owl:onProperty linkml:annotations ],
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:related_mappings ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
@@ -1543,66 +1553,56 @@ linkml:Element a owl:Class,
             owl:onProperty linkml:in_subset ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:related_mappings ],
+            owl:onProperty linkml:exact_mappings ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:String ;
             owl:onProperty linkml:comments ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:AltDescription ;
-            owl:onProperty linkml:alt_descriptions ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:see_also ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:Ncname ;
             owl:onProperty linkml:id_prefixes ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:broad_mappings ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:close_mappings ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:String ;
-            owl:onProperty linkml:aliases ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:name ;
+            owl:qualifiedCardinality 1 ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
             owl:onProperty linkml:deprecated_element_has_possible_replacement ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Extension ;
-            owl:onProperty linkml:extensions ],
+            owl:allValuesFrom linkml:Annotation ;
+            owl:onProperty linkml:annotations ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Uriorcurie ;
-            owl:onProperty linkml:narrow_mappings ],
+            owl:allValuesFrom linkml:String ;
+            owl:onProperty linkml:notes ],
         [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:deprecated ],
+            owl:allValuesFrom linkml:Example ;
+            owl:onProperty linkml:examples ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Extension ;
+            owl:onProperty linkml:extensions ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
             owl:onProperty linkml:description ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:Example ;
-            owl:onProperty linkml:examples ],
-        [ a owl:Restriction ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:name ;
-            owl:qualifiedCardinality 1 ],
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:deprecated_element_has_exact_replacement ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:Uriorcurie ;
             owl:onProperty linkml:mappings ],
         [ a owl:Restriction ;
-            owl:allValuesFrom linkml:LocalName ;
-            owl:onProperty linkml:local_names ],
+            owl:allValuesFrom linkml:String ;
+            owl:onProperty linkml:aliases ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:String ;
             owl:onProperty linkml:todos ],
         [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:deprecated_element_has_exact_replacement ],
+            owl:allValuesFrom linkml:AltDescription ;
+            owl:onProperty linkml:alt_descriptions ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:Uriorcurie ;
+            owl:onProperty linkml:close_mappings ],
         linkml:Annotatable,
         linkml:CommonMetadata,
         linkml:Extensible ;
@@ -1621,42 +1621,42 @@ linkml:ClassDefinition a owl:Class,
         linkml:ClassDefinition ;
     rdfs:label "class_definition" ;
     rdfs:subClassOf [ a owl:Restriction ;
+            owl:allValuesFrom linkml:ClassDefinition ;
+            owl:onProperty linkml:mixins ],
+        [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:ClassDefinition ;
             owl:onProperty linkml:is_a ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:ClassDefinition ;
             owl:onProperty linkml:apply_to ],
+        [ a owl:Restriction ;
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:Boolean ;
+            owl:onProperty linkml:tree_root ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:SlotDefinition ;
-            owl:onProperty linkml:slots ],
+            owl:onProperty linkml:defining_slots ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:SlotDefinition ;
+            owl:onProperty linkml:attributes ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
             owl:onProperty linkml:subclass_of ],
-        [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:tree_root ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Uriorcurie ;
             owl:onProperty linkml:class_uri ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:SlotDefinition ;
-            owl:onProperty linkml:defining_slots ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:ClassDefinition ;
-            owl:onProperty linkml:mixins ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:SlotDefinition ;
-            owl:onProperty linkml:attributes ],
+            owl:onProperty linkml:slot_usage ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:ClassDefinition ;
             owl:onProperty linkml:union_of ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:SlotDefinition ;
-            owl:onProperty linkml:slot_usage ],
+            owl:onProperty linkml:slots ],
         linkml:Definition ;
     skos:altLabel "message",
         "observation",
@@ -1689,12 +1689,8 @@ linkml:SlotDefinition a owl:Class,
     rdfs:label "slot_definition" ;
     rdfs:subClassOf [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:inherited ],
-        [ a owl:Restriction ;
-            owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:identifier ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:readonly ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
@@ -1702,112 +1698,116 @@ linkml:SlotDefinition a owl:Class,
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:key ],
+            owl:onProperty linkml:designates_type ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:recommended ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:singular_name ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:SlotDefinition ;
-            owl:onProperty linkml:subproperty_of ],
+            owl:onProperty linkml:inverse ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Integer ;
-            owl:onProperty linkml:minimum_value ],
+            owl:onClass linkml:ClassDefinition ;
+            owl:onProperty linkml:domain ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:ifabsent ],
+            owl:onClass linkml:Uriorcurie ;
+            owl:onProperty linkml:slot_uri ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:inlined_as_list ],
+            owl:onClass linkml:SlotDefinition ;
+            owl:onProperty linkml:subproperty_of ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:ClassDefinition ;
-            owl:onProperty linkml:domain ],
+            owl:onClass linkml:Element ;
+            owl:onProperty linkml:range ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Definition ;
-            owl:onProperty linkml:owner ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:pattern ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:symmetric ],
-        [ a owl:Restriction ;
-            owl:allValuesFrom linkml:SlotDefinition ;
-            owl:onProperty linkml:mixins ],
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:ifabsent ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:designates_type ],
+            owl:onProperty linkml:identifier ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:String ;
-            owl:onProperty linkml:usage_slot_name ],
+            owl:onProperty linkml:alias ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:pattern ],
+            owl:onClass linkml:SlotDefinition ;
+            owl:onProperty linkml:is_a ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:SlotDefinition ;
-            owl:onProperty linkml:apply_to ],
+            owl:onProperty linkml:mixins ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:multivalued ],
+            owl:onProperty linkml:inherited ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:inlined ],
+            owl:onProperty linkml:inlined_as_list ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:is_usage_slot ],
+            owl:onProperty linkml:key ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Integer ;
-            owl:onProperty linkml:maximum_value ],
+            owl:onClass linkml:Boolean ;
+            owl:onProperty linkml:recommended ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Element ;
-            owl:onProperty linkml:range ],
+            owl:onClass linkml:Boolean ;
+            owl:onProperty linkml:multivalued ],
+        [ a owl:Restriction ;
+            owl:maxQualifiedCardinality 1 ;
+            owl:onClass linkml:String ;
+            owl:onProperty linkml:usage_slot_name ],
         [ a owl:Restriction ;
             owl:allValuesFrom linkml:ClassDefinition ;
             owl:onProperty linkml:domain_of ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:is_class_field ],
+            owl:onProperty linkml:required ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:readonly ],
+            owl:onClass linkml:Boolean ;
+            owl:onProperty linkml:is_class_field ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:alias ],
+            owl:onClass linkml:Definition ;
+            owl:onProperty linkml:owner ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:Uriorcurie ;
-            owl:onProperty linkml:slot_uri ],
+            owl:onClass linkml:Boolean ;
+            owl:onProperty linkml:symmetric ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
             owl:onClass linkml:Boolean ;
-            owl:onProperty linkml:required ],
+            owl:onProperty linkml:inlined ],
+        [ a owl:Restriction ;
+            owl:allValuesFrom linkml:SlotDefinition ;
+            owl:onProperty linkml:apply_to ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:SlotDefinition ;
-            owl:onProperty linkml:inverse ],
+            owl:onClass linkml:Integer ;
+            owl:onProperty linkml:maximum_value ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:String ;
-            owl:onProperty linkml:singular_name ],
+            owl:onClass linkml:Integer ;
+            owl:onProperty linkml:minimum_value ],
         [ a owl:Restriction ;
             owl:maxQualifiedCardinality 1 ;
-            owl:onClass linkml:SlotDefinition ;
-            owl:onProperty linkml:is_a ],
+            owl:onClass linkml:Boolean ;
+            owl:onProperty linkml:is_usage_slot ],
         linkml:Definition ;
     skos:altLabel "attribute",
         "column",
diff --git a/linkml_model/rdf/annotations.model.ttl b/linkml_model/rdf/annotations.model.ttl
index de992d57..0c8f2418 100644
--- a/linkml_model/rdf/annotations.model.ttl
+++ b/linkml_model/rdf/annotations.model.ttl
@@ -4,24 +4,16 @@
 
 [] a linkml:SchemaDefinition ;
     linkml:classes [ a linkml:ClassDefinition ;
-            linkml:class_uri "https://w3id.org/linkml/Extensible" ;
-            linkml:definition_uri "https://w3id.org/linkml/Extensible" ;
-            linkml:description "mixin for classes that support extension" ;
+            linkml:class_uri "https://w3id.org/linkml/Extension" ;
+            linkml:definition_uri "https://w3id.org/linkml/Extension" ;
+            linkml:description "a tag/value pair used to add non-model information to an entry" ;
             linkml:from_schema "https://w3id.org/linkml/extensions" ;
             linkml:imported_from "linkml:extensions" ;
-            linkml:mixin true ;
-            linkml:name "Extensible" ;
-            linkml:slot_usage [ ] ;
-            linkml:slots "extensions" ],
-        [ a linkml:ClassDefinition ;
-            linkml:class_uri "https://w3id.org/linkml/Annotatable" ;
-            linkml:definition_uri "https://w3id.org/linkml/Annotatable" ;
-            linkml:description "mixin for classes that support annotations" ;
-            linkml:from_schema "https://w3id.org/linkml/annotations" ;
-            linkml:mixin true ;
-            linkml:name "Annotatable" ;
+            linkml:name "Extension" ;
             linkml:slot_usage [ ] ;
-            linkml:slots "annotations" ],
+            linkml:slots "extension_tag",
+                "extension_value",
+                "extensions" ],
         [ a linkml:ClassDefinition ;
             linkml:class_uri "https://w3id.org/linkml/Annotation" ;
             linkml:definition_uri "https://w3id.org/linkml/Annotation" ;
@@ -36,21 +28,29 @@
                 "extension_value",
                 "extensions" ],
         [ a linkml:ClassDefinition ;
-            linkml:class_uri "https://w3id.org/linkml/Extension" ;
-            linkml:definition_uri "https://w3id.org/linkml/Extension" ;
-            linkml:description "a tag/value pair used to add non-model information to an entry" ;
+            linkml:class_uri "https://w3id.org/linkml/Annotatable" ;
+            linkml:definition_uri "https://w3id.org/linkml/Annotatable" ;
+            linkml:description "mixin for classes that support annotations" ;
+            linkml:from_schema "https://w3id.org/linkml/annotations" ;
+            linkml:mixin true ;
+            linkml:name "Annotatable" ;
+            linkml:slot_usage [ ] ;
+            linkml:slots "annotations" ],
+        [ a linkml:ClassDefinition ;
+            linkml:class_uri "https://w3id.org/linkml/Extensible" ;
+            linkml:definition_uri "https://w3id.org/linkml/Extensible" ;
+            linkml:description "mixin for classes that support extension" ;
             linkml:from_schema "https://w3id.org/linkml/extensions" ;
             linkml:imported_from "linkml:extensions" ;
-            linkml:name "Extension" ;
+            linkml:mixin true ;
+            linkml:name "Extensible" ;
             linkml:slot_usage [ ] ;
-            linkml:slots "extension_tag",
-                "extension_value",
-                "extensions" ] ;
+            linkml:slots "extensions" ] ;
     linkml:default_prefix "linkml" ;
     linkml:default_range "string" ;
     linkml:description "Annotations mixin" ;
     linkml:emit_prefixes "linkml" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/annotations" ;
     linkml:imports "linkml:extensions",
         "linkml:types" ;
@@ -60,19 +60,18 @@
     linkml:prefixes [ linkml:prefix_prefix "linkml" ;
             linkml:prefix_reference "https://w3id.org/linkml/" ] ;
     linkml:slots [ a linkml:SlotDefinition ;
-            linkml:definition_uri "https://w3id.org/linkml/extensions" ;
-            linkml:description "a tag/text tuple attached to an arbitrary element" ;
-            linkml:domain "Extensible" ;
-            linkml:domain_of "Extensible",
-                "Extension" ;
+            linkml:alias "value" ;
+            linkml:definition_uri "https://w3id.org/linkml/extension_value" ;
+            linkml:description "the actual annotation" ;
+            linkml:domain "Extension" ;
+            linkml:domain_of "Extension" ;
             linkml:from_schema "https://w3id.org/linkml/extensions" ;
             linkml:imported_from "linkml:extensions" ;
-            linkml:inlined true ;
-            linkml:multivalued true ;
-            linkml:name "extensions" ;
-            linkml:owner "Extensible" ;
-            linkml:range "Extension" ;
-            linkml:slot_uri "https://w3id.org/linkml/extensions" ],
+            linkml:name "extension_value" ;
+            linkml:owner "Extension" ;
+            linkml:range "string" ;
+            linkml:required true ;
+            linkml:slot_uri "https://w3id.org/linkml/value" ],
         [ a linkml:SlotDefinition ;
             linkml:alias "tag" ;
             linkml:definition_uri "https://w3id.org/linkml/extension_tag" ;
@@ -86,19 +85,6 @@
             linkml:range "uriorcurie" ;
             linkml:required true ;
             linkml:slot_uri "https://w3id.org/linkml/tag" ],
-        [ a linkml:SlotDefinition ;
-            linkml:alias "value" ;
-            linkml:definition_uri "https://w3id.org/linkml/extension_value" ;
-            linkml:description "the actual annotation" ;
-            linkml:domain "Extension" ;
-            linkml:domain_of "Extension" ;
-            linkml:from_schema "https://w3id.org/linkml/extensions" ;
-            linkml:imported_from "linkml:extensions" ;
-            linkml:name "extension_value" ;
-            linkml:owner "Extension" ;
-            linkml:range "string" ;
-            linkml:required true ;
-            linkml:slot_uri "https://w3id.org/linkml/value" ],
         [ a linkml:SlotDefinition ;
             linkml:definition_uri "https://w3id.org/linkml/annotations" ;
             linkml:description "a collection of tag/text tuples with the semantics of OWL Annotation" ;
@@ -112,20 +98,60 @@
             linkml:name "annotations" ;
             linkml:owner "Annotation" ;
             linkml:range "Annotation" ;
-            linkml:slot_uri "https://w3id.org/linkml/annotations" ] ;
+            linkml:slot_uri "https://w3id.org/linkml/annotations" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/extensions" ;
+            linkml:description "a tag/text tuple attached to an arbitrary element" ;
+            linkml:domain "Extensible" ;
+            linkml:domain_of "Extensible",
+                "Extension" ;
+            linkml:from_schema "https://w3id.org/linkml/extensions" ;
+            linkml:imported_from "linkml:extensions" ;
+            linkml:inlined true ;
+            linkml:multivalued true ;
+            linkml:name "extensions" ;
+            linkml:owner "Extensible" ;
+            linkml:range "Extension" ;
+            linkml:slot_uri "https://w3id.org/linkml/extensions" ] ;
     linkml:source_file "annotations.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 833 ;
     linkml:types [ a linkml:TypeDefinition ;
-            linkml:base "ElementIdentifier" ;
-            linkml:comments "Used for inheritence and type checking" ;
-            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
-            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:base "NCName" ;
+            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
+            linkml:description "Prefix part of CURIE" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "objectidentifier" ;
+            linkml:name "ncname" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#iri" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDDateTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
+            linkml:description "The combination of a date and time" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "datetime" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "int" ;
+            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
+            linkml:description "An integer" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "integer" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
         [ a linkml:TypeDefinition ;
             linkml:base "Bool" ;
             linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
@@ -136,39 +162,30 @@
             linkml:repr "bool" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Float" ;
-            linkml:description "A real number that conforms to the xsd:float specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "float" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "NCName" ;
-            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
-            linkml:description "Prefix part of CURIE" ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "ncname" ;
-            linkml:repr "str" ;
+            linkml:name "string" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDDate" ;
-            linkml:definition_uri "https://w3id.org/linkml/Date" ;
-            linkml:description "a date (year, month and day) in an idealized calendar" ;
+            linkml:base "ElementIdentifier" ;
+            linkml:comments "Used for inheritence and type checking" ;
+            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
+            linkml:description "A URI or CURIE that represents an object in the model." ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "date" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:name "objectidentifier" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
+            linkml:uri "http://www.w3.org/ns/shex#iri" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "URIorCURIE" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
-            linkml:description "a URI or a CURIE" ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uriorcurie" ;
+            linkml:name "uri" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
@@ -180,15 +197,6 @@
             linkml:name "nodeidentifier" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "XSDDateTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
-            linkml:description "The combination of a date and time" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "datetime" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
             linkml:base "float" ;
             linkml:definition_uri "https://w3id.org/linkml/Double" ;
@@ -198,48 +206,40 @@
             linkml:name "double" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "str" ;
-            linkml:definition_uri "https://w3id.org/linkml/String" ;
-            linkml:description "A character string" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "string" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "Decimal" ;
-            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
-            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
+            linkml:base "URIorCURIE" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
+            linkml:description "a URI or a CURIE" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "decimal" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
+            linkml:name "uriorcurie" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "int" ;
-            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
-            linkml:description "An integer" ;
+            linkml:base "XSDDate" ;
+            linkml:definition_uri "https://w3id.org/linkml/Date" ;
+            linkml:description "a date (year, month and day) in an idealized calendar" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "integer" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
+            linkml:name "date" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "URI" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
-            linkml:description "a complete URI" ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Float" ;
+            linkml:description "A real number that conforms to the xsd:float specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uri" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+            linkml:name "float" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ] ;
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/annotations.ttl b/linkml_model/rdf/annotations.ttl
index 8ad35f1e..42ef2d00 100644
--- a/linkml_model/rdf/annotations.ttl
+++ b/linkml_model/rdf/annotations.ttl
@@ -50,7 +50,7 @@
     linkml:default_range "string" ;
     linkml:description "Annotations mixin" ;
     linkml:emit_prefixes "linkml" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/annotations" ;
     linkml:imports "linkml:extensions",
         "linkml:types" ;
@@ -60,19 +60,6 @@
     linkml:prefixes [ linkml:prefix_prefix "linkml" ;
             linkml:prefix_reference "https://w3id.org/linkml/" ] ;
     linkml:slots [ a linkml:SlotDefinition ;
-            linkml:alias "tag" ;
-            linkml:definition_uri "https://w3id.org/linkml/extension_tag" ;
-            linkml:description "a tag associated with an extension" ;
-            linkml:domain "Extension" ;
-            linkml:domain_of "Extension" ;
-            linkml:from_schema "https://w3id.org/linkml/extensions" ;
-            linkml:imported_from "linkml:extensions" ;
-            linkml:name "extension_tag" ;
-            linkml:owner "Extension" ;
-            linkml:range "uriorcurie" ;
-            linkml:required true ;
-            linkml:slot_uri "https://w3id.org/linkml/tag" ],
-        [ a linkml:SlotDefinition ;
             linkml:definition_uri "https://w3id.org/linkml/extensions" ;
             linkml:description "a tag/text tuple attached to an arbitrary element" ;
             linkml:domain "Extensible" ;
@@ -86,6 +73,32 @@
             linkml:owner "Extensible" ;
             linkml:range "Extension" ;
             linkml:slot_uri "https://w3id.org/linkml/extensions" ],
+        [ a linkml:SlotDefinition ;
+            linkml:alias "value" ;
+            linkml:definition_uri "https://w3id.org/linkml/extension_value" ;
+            linkml:description "the actual annotation" ;
+            linkml:domain "Extension" ;
+            linkml:domain_of "Extension" ;
+            linkml:from_schema "https://w3id.org/linkml/extensions" ;
+            linkml:imported_from "linkml:extensions" ;
+            linkml:name "extension_value" ;
+            linkml:owner "Extension" ;
+            linkml:range "string" ;
+            linkml:required true ;
+            linkml:slot_uri "https://w3id.org/linkml/value" ],
+        [ a linkml:SlotDefinition ;
+            linkml:alias "tag" ;
+            linkml:definition_uri "https://w3id.org/linkml/extension_tag" ;
+            linkml:description "a tag associated with an extension" ;
+            linkml:domain "Extension" ;
+            linkml:domain_of "Extension" ;
+            linkml:from_schema "https://w3id.org/linkml/extensions" ;
+            linkml:imported_from "linkml:extensions" ;
+            linkml:name "extension_tag" ;
+            linkml:owner "Extension" ;
+            linkml:range "uriorcurie" ;
+            linkml:required true ;
+            linkml:slot_uri "https://w3id.org/linkml/tag" ],
         [ a linkml:SlotDefinition ;
             linkml:definition_uri "https://w3id.org/linkml/annotations" ;
             linkml:description "a collection of tag/text tuples with the semantics of OWL Annotation" ;
@@ -99,24 +112,21 @@
             linkml:name "annotations" ;
             linkml:owner "Annotation" ;
             linkml:range "Annotation" ;
-            linkml:slot_uri "https://w3id.org/linkml/annotations" ],
-        [ a linkml:SlotDefinition ;
-            linkml:alias "value" ;
-            linkml:definition_uri "https://w3id.org/linkml/extension_value" ;
-            linkml:description "the actual annotation" ;
-            linkml:domain "Extension" ;
-            linkml:domain_of "Extension" ;
-            linkml:from_schema "https://w3id.org/linkml/extensions" ;
-            linkml:imported_from "linkml:extensions" ;
-            linkml:name "extension_value" ;
-            linkml:owner "Extension" ;
-            linkml:range "string" ;
-            linkml:required true ;
-            linkml:slot_uri "https://w3id.org/linkml/value" ] ;
+            linkml:slot_uri "https://w3id.org/linkml/annotations" ] ;
     linkml:source_file "annotations.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 833 ;
     linkml:types [ a linkml:TypeDefinition ;
+            linkml:base "ElementIdentifier" ;
+            linkml:comments "Used for inheritence and type checking" ;
+            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
+            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "objectidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#iri" ],
+        [ a linkml:TypeDefinition ;
             linkml:base "float" ;
             linkml:definition_uri "https://w3id.org/linkml/Float" ;
             linkml:description "A real number that conforms to the xsd:float specification" ;
@@ -124,6 +134,34 @@
             linkml:imported_from "linkml:types" ;
             linkml:name "float" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Bool" ;
+            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
+            linkml:description "A binary (true or false) value" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "boolean" ;
+            linkml:repr "bool" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "nodeidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
         [ a linkml:TypeDefinition ;
             linkml:base "int" ;
             linkml:definition_uri "https://w3id.org/linkml/Integer" ;
@@ -133,14 +171,14 @@
             linkml:name "integer" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "URI" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
-            linkml:description "a complete URI" ;
+            linkml:base "NCName" ;
+            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
+            linkml:description "Prefix part of CURIE" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uri" ;
+            linkml:name "ncname" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
             linkml:base "XSDDateTime" ;
             linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
@@ -150,15 +188,6 @@
             linkml:name "datetime" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "Bool" ;
-            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
-            linkml:description "A binary (true or false) value" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "boolean" ;
-            linkml:repr "bool" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
         [ a linkml:TypeDefinition ;
             linkml:base "URIorCURIE" ;
             linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
@@ -169,32 +198,14 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDDate" ;
-            linkml:definition_uri "https://w3id.org/linkml/Date" ;
-            linkml:description "a date (year, month and day) in an idealized calendar" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "date" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Double" ;
-            linkml:description "A real number that conforms to the xsd:double specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "double" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "NodeIdentifier" ;
-            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
-            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "nodeidentifier" ;
+            linkml:name "uri" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
             linkml:base "str" ;
             linkml:definition_uri "https://w3id.org/linkml/String" ;
@@ -204,14 +215,23 @@
             linkml:name "string" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "NCName" ;
-            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
-            linkml:description "Prefix part of CURIE" ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Double" ;
+            linkml:description "A real number that conforms to the xsd:double specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "ncname" ;
+            linkml:name "double" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDDate" ;
+            linkml:definition_uri "https://w3id.org/linkml/Date" ;
+            linkml:description "a date (year, month and day) in an idealized calendar" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "date" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
         [ a linkml:TypeDefinition ;
             linkml:base "Decimal" ;
             linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
@@ -219,27 +239,7 @@
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
             linkml:name "decimal" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "ElementIdentifier" ;
-            linkml:comments "Used for inheritence and type checking" ;
-            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
-            linkml:description "A URI or CURIE that represents an object in the model." ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "objectidentifier" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#iri" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ] ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/extensions.model.ttl b/linkml_model/rdf/extensions.model.ttl
index 402bae61..da2237d7 100644
--- a/linkml_model/rdf/extensions.model.ttl
+++ b/linkml_model/rdf/extensions.model.ttl
@@ -4,15 +4,6 @@
 
 [] a linkml:SchemaDefinition ;
     linkml:classes [ a linkml:ClassDefinition ;
-            linkml:class_uri "https://w3id.org/linkml/Extensible" ;
-            linkml:definition_uri "https://w3id.org/linkml/Extensible" ;
-            linkml:description "mixin for classes that support extension" ;
-            linkml:from_schema "https://w3id.org/linkml/extensions" ;
-            linkml:mixin true ;
-            linkml:name "Extensible" ;
-            linkml:slot_usage [ ] ;
-            linkml:slots "extensions" ],
-        [ a linkml:ClassDefinition ;
             linkml:class_uri "https://w3id.org/linkml/Extension" ;
             linkml:definition_uri "https://w3id.org/linkml/Extension" ;
             linkml:description "a tag/value pair used to add non-model information to an entry" ;
@@ -21,12 +12,21 @@
             linkml:slot_usage [ ] ;
             linkml:slots "extension_tag",
                 "extension_value",
-                "extensions" ] ;
+                "extensions" ],
+        [ a linkml:ClassDefinition ;
+            linkml:class_uri "https://w3id.org/linkml/Extensible" ;
+            linkml:definition_uri "https://w3id.org/linkml/Extensible" ;
+            linkml:description "mixin for classes that support extension" ;
+            linkml:from_schema "https://w3id.org/linkml/extensions" ;
+            linkml:mixin true ;
+            linkml:name "Extensible" ;
+            linkml:slot_usage [ ] ;
+            linkml:slots "extensions" ] ;
     linkml:default_prefix "linkml" ;
     linkml:default_range "string" ;
     linkml:description "Extension mixin" ;
     linkml:emit_prefixes "linkml" ;
-    linkml:generation_date "2021-09-17 20:25" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/extensions" ;
     linkml:imports "linkml:types" ;
     linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
@@ -72,18 +72,9 @@
             linkml:required true ;
             linkml:slot_uri "https://w3id.org/linkml/tag" ] ;
     linkml:source_file "extensions.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 1043 ;
     linkml:types [ a linkml:TypeDefinition ;
-            linkml:base "URIorCURIE" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
-            linkml:description "a URI or a CURIE" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "uriorcurie" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
-        [ a linkml:TypeDefinition ;
             linkml:base "NCName" ;
             linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
             linkml:description "Prefix part of CURIE" ;
@@ -92,6 +83,15 @@
             linkml:name "ncname" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Bool" ;
+            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
+            linkml:description "A binary (true or false) value" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "boolean" ;
+            linkml:repr "bool" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
         [ a linkml:TypeDefinition ;
             linkml:base "XSDDate" ;
             linkml:definition_uri "https://w3id.org/linkml/Date" ;
@@ -103,31 +103,24 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "Decimal" ;
-            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
-            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "decimal" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "NodeIdentifier" ;
-            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
-            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:base "URIorCURIE" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
+            linkml:description "a URI or a CURIE" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "nodeidentifier" ;
+            linkml:name "uriorcurie" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "URI" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
-            linkml:description "a complete URI" ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uri" ;
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
             linkml:base "float" ;
             linkml:definition_uri "https://w3id.org/linkml/Float" ;
@@ -136,25 +129,6 @@
             linkml:imported_from "linkml:types" ;
             linkml:name "float" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "Bool" ;
-            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
-            linkml:description "A binary (true or false) value" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "boolean" ;
-            linkml:repr "bool" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
             linkml:base "XSDDateTime" ;
             linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
@@ -165,13 +139,24 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "str" ;
-            linkml:definition_uri "https://w3id.org/linkml/String" ;
-            linkml:description "A character string" ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "string" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+            linkml:name "nodeidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "ElementIdentifier" ;
+            linkml:comments "Used for inheritence and type checking" ;
+            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
+            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "objectidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#iri" ],
         [ a linkml:TypeDefinition ;
             linkml:base "int" ;
             linkml:definition_uri "https://w3id.org/linkml/Integer" ;
@@ -180,6 +165,15 @@
             linkml:imported_from "linkml:types" ;
             linkml:name "integer" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uri" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
             linkml:base "float" ;
             linkml:definition_uri "https://w3id.org/linkml/Double" ;
@@ -189,15 +183,21 @@
             linkml:name "double" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "ElementIdentifier" ;
-            linkml:comments "Used for inheritence and type checking" ;
-            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
-            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "objectidentifier" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#iri" ] ;
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/extensions.ttl b/linkml_model/rdf/extensions.ttl
index 45d24785..86597fd4 100644
--- a/linkml_model/rdf/extensions.ttl
+++ b/linkml_model/rdf/extensions.ttl
@@ -4,15 +4,6 @@
 
 [] a linkml:SchemaDefinition ;
     linkml:classes [ a linkml:ClassDefinition ;
-            linkml:class_uri "https://w3id.org/linkml/Extensible" ;
-            linkml:definition_uri "https://w3id.org/linkml/Extensible" ;
-            linkml:description "mixin for classes that support extension" ;
-            linkml:from_schema "https://w3id.org/linkml/extensions" ;
-            linkml:mixin true ;
-            linkml:name "Extensible" ;
-            linkml:slot_usage [ ] ;
-            linkml:slots "extensions" ],
-        [ a linkml:ClassDefinition ;
             linkml:class_uri "https://w3id.org/linkml/Extension" ;
             linkml:definition_uri "https://w3id.org/linkml/Extension" ;
             linkml:description "a tag/value pair used to add non-model information to an entry" ;
@@ -21,12 +12,21 @@
             linkml:slot_usage [ ] ;
             linkml:slots "extension_tag",
                 "extension_value",
-                "extensions" ] ;
+                "extensions" ],
+        [ a linkml:ClassDefinition ;
+            linkml:class_uri "https://w3id.org/linkml/Extensible" ;
+            linkml:definition_uri "https://w3id.org/linkml/Extensible" ;
+            linkml:description "mixin for classes that support extension" ;
+            linkml:from_schema "https://w3id.org/linkml/extensions" ;
+            linkml:mixin true ;
+            linkml:name "Extensible" ;
+            linkml:slot_usage [ ] ;
+            linkml:slots "extensions" ] ;
     linkml:default_prefix "linkml" ;
     linkml:default_range "string" ;
     linkml:description "Extension mixin" ;
     linkml:emit_prefixes "linkml" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/extensions" ;
     linkml:imports "linkml:types" ;
     linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
@@ -35,19 +35,6 @@
     linkml:prefixes [ linkml:prefix_prefix "linkml" ;
             linkml:prefix_reference "https://w3id.org/linkml/" ] ;
     linkml:slots [ a linkml:SlotDefinition ;
-            linkml:definition_uri "https://w3id.org/linkml/extensions" ;
-            linkml:description "a tag/text tuple attached to an arbitrary element" ;
-            linkml:domain "Extensible" ;
-            linkml:domain_of "Extensible",
-                "Extension" ;
-            linkml:from_schema "https://w3id.org/linkml/extensions" ;
-            linkml:inlined true ;
-            linkml:multivalued true ;
-            linkml:name "extensions" ;
-            linkml:owner "Extensible" ;
-            linkml:range "Extension" ;
-            linkml:slot_uri "https://w3id.org/linkml/extensions" ],
-        [ a linkml:SlotDefinition ;
             linkml:alias "tag" ;
             linkml:definition_uri "https://w3id.org/linkml/extension_tag" ;
             linkml:description "a tag associated with an extension" ;
@@ -70,29 +57,48 @@
             linkml:owner "Extension" ;
             linkml:range "string" ;
             linkml:required true ;
-            linkml:slot_uri "https://w3id.org/linkml/value" ] ;
+            linkml:slot_uri "https://w3id.org/linkml/value" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/extensions" ;
+            linkml:description "a tag/text tuple attached to an arbitrary element" ;
+            linkml:domain "Extensible" ;
+            linkml:domain_of "Extensible",
+                "Extension" ;
+            linkml:from_schema "https://w3id.org/linkml/extensions" ;
+            linkml:inlined true ;
+            linkml:multivalued true ;
+            linkml:name "extensions" ;
+            linkml:owner "Extensible" ;
+            linkml:range "Extension" ;
+            linkml:slot_uri "https://w3id.org/linkml/extensions" ] ;
     linkml:source_file "extensions.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 1043 ;
     linkml:types [ a linkml:TypeDefinition ;
-            linkml:base "Bool" ;
-            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
-            linkml:description "A binary (true or false) value" ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "boolean" ;
-            linkml:repr "bool" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URIorCURIE" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
+            linkml:description "a URI or a CURIE" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uriorcurie" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
             linkml:base "XSDDateTime" ;
             linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
@@ -103,21 +109,24 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "Decimal" ;
-            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
-            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "decimal" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Double" ;
-            linkml:description "A real number that conforms to the xsd:double specification" ;
+            linkml:base "NCName" ;
+            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
+            linkml:description "Prefix part of CURIE" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "double" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
+            linkml:name "ncname" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
             linkml:base "URI" ;
             linkml:definition_uri "https://w3id.org/linkml/Uri" ;
@@ -128,15 +137,14 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "ElementIdentifier" ;
-            linkml:comments "Used for inheritence and type checking" ;
-            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
-            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "objectidentifier" ;
+            linkml:name "nodeidentifier" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#iri" ],
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
         [ a linkml:TypeDefinition ;
             linkml:base "XSDDate" ;
             linkml:definition_uri "https://w3id.org/linkml/Date" ;
@@ -156,13 +164,13 @@
             linkml:name "integer" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "str" ;
-            linkml:definition_uri "https://w3id.org/linkml/String" ;
-            linkml:description "A character string" ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Double" ;
+            linkml:description "A real number that conforms to the xsd:double specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "string" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+            linkml:name "double" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
         [ a linkml:TypeDefinition ;
             linkml:base "float" ;
             linkml:definition_uri "https://w3id.org/linkml/Float" ;
@@ -172,32 +180,24 @@
             linkml:name "float" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "NodeIdentifier" ;
-            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
-            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "nodeidentifier" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "URIorCURIE" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
-            linkml:description "a URI or a CURIE" ;
+            linkml:base "Bool" ;
+            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
+            linkml:description "A binary (true or false) value" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uriorcurie" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+            linkml:name "boolean" ;
+            linkml:repr "bool" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "NCName" ;
-            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
-            linkml:description "Prefix part of CURIE" ;
+            linkml:base "ElementIdentifier" ;
+            linkml:comments "Used for inheritence and type checking" ;
+            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
+            linkml:description "A URI or CURIE that represents an object in the model." ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "ncname" ;
+            linkml:name "objectidentifier" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ] ;
+            linkml:uri "http://www.w3.org/ns/shex#iri" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/mappings.model.ttl b/linkml_model/rdf/mappings.model.ttl
index 0946b27e..11fc6acf 100644
--- a/linkml_model/rdf/mappings.model.ttl
+++ b/linkml_model/rdf/mappings.model.ttl
@@ -16,31 +16,21 @@
         "rdfs",
         "skos",
         "xsd" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/mappings" ;
     linkml:imports "linkml:types" ;
     linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
     linkml:metamodel_version "1.7.0" ;
     linkml:name "mappings" ;
-    linkml:prefixes [ linkml:prefix_prefix "OIO" ;
-            linkml:prefix_reference "http://www.geneontology.org/formats/oboInOwl#" ],
+    linkml:prefixes [ linkml:prefix_prefix "skos" ;
+            linkml:prefix_reference "http://www.w3.org/2004/02/skos/core#" ],
         [ linkml:prefix_prefix "linkml" ;
             linkml:prefix_reference "https://w3id.org/linkml/" ],
         [ linkml:prefix_prefix "IAO" ;
             linkml:prefix_reference "http://purl.obolibrary.org/obo/IAO_" ],
-        [ linkml:prefix_prefix "skos" ;
-            linkml:prefix_reference "http://www.w3.org/2004/02/skos/core#" ] ;
+        [ linkml:prefix_prefix "OIO" ;
+            linkml:prefix_reference "http://www.geneontology.org/formats/oboInOwl#" ] ;
     linkml:slots [ a linkml:SlotDefinition ;
-            skos:mappingRelation skos:exactMatch ;
-            linkml:definition_uri "https://w3id.org/linkml/exact_mappings" ;
-            linkml:description "A list of terms from different schemas or terminology systems that have identical meaning." ;
-            linkml:from_schema "https://w3id.org/linkml/mappings" ;
-            linkml:is_a "mappings" ;
-            linkml:multivalued true ;
-            linkml:name "exact_mappings" ;
-            linkml:range "uriorcurie" ;
-            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#exactMatch" ],
-        [ a linkml:SlotDefinition ;
             skos:mappingRelation skos:broadMatch ;
             linkml:definition_uri "https://w3id.org/linkml/broad_mappings" ;
             linkml:description "A list of terms from different schemas or terminology systems that have broader meaning." ;
@@ -69,24 +59,15 @@
             linkml:range "uriorcurie" ;
             linkml:slot_uri "http://www.w3.org/2004/02/skos/core#narrowMatch" ],
         [ a linkml:SlotDefinition ;
-            skos:mappingRelation skos:mappingRelation ;
-            linkml:definition_uri "https://w3id.org/linkml/mappings" ;
-            linkml:description "A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective." ;
-            linkml:from_schema "https://w3id.org/linkml/mappings" ;
-            linkml:multivalued true ;
-            linkml:name "mappings" ;
-            linkml:range "uriorcurie" ;
-            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#mappingRelation" ],
-        [ a linkml:SlotDefinition ;
-            skos:mappingRelation skos:relatedMatch ;
-            linkml:definition_uri "https://w3id.org/linkml/related_mappings" ;
-            linkml:description "A list of terms from different schemas or terminology systems that have related meaning." ;
+            skos:mappingRelation skos:exactMatch ;
+            linkml:definition_uri "https://w3id.org/linkml/exact_mappings" ;
+            linkml:description "A list of terms from different schemas or terminology systems that have identical meaning." ;
             linkml:from_schema "https://w3id.org/linkml/mappings" ;
             linkml:is_a "mappings" ;
             linkml:multivalued true ;
-            linkml:name "related_mappings" ;
+            linkml:name "exact_mappings" ;
             linkml:range "uriorcurie" ;
-            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#relatedMatch" ],
+            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#exactMatch" ],
         [ a linkml:SlotDefinition ;
             skos:mappingRelation skos:closeMatch ;
             linkml:definition_uri "https://w3id.org/linkml/close_mappings" ;
@@ -104,48 +85,73 @@
             linkml:from_schema "https://w3id.org/linkml/mappings" ;
             linkml:name "deprecated_element_has_possible_replacement" ;
             linkml:range "uriorcurie" ;
-            linkml:slot_uri "https://w3id.org/linkml/deprecated_element_has_possible_replacement" ] ;
+            linkml:slot_uri "https://w3id.org/linkml/deprecated_element_has_possible_replacement" ],
+        [ a linkml:SlotDefinition ;
+            skos:mappingRelation skos:relatedMatch ;
+            linkml:definition_uri "https://w3id.org/linkml/related_mappings" ;
+            linkml:description "A list of terms from different schemas or terminology systems that have related meaning." ;
+            linkml:from_schema "https://w3id.org/linkml/mappings" ;
+            linkml:is_a "mappings" ;
+            linkml:multivalued true ;
+            linkml:name "related_mappings" ;
+            linkml:range "uriorcurie" ;
+            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#relatedMatch" ],
+        [ a linkml:SlotDefinition ;
+            skos:mappingRelation skos:mappingRelation ;
+            linkml:definition_uri "https://w3id.org/linkml/mappings" ;
+            linkml:description "A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective." ;
+            linkml:from_schema "https://w3id.org/linkml/mappings" ;
+            linkml:multivalued true ;
+            linkml:name "mappings" ;
+            linkml:range "uriorcurie" ;
+            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#mappingRelation" ] ;
     linkml:source_file "mappings.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 2656 ;
     linkml:title "LinkML Schema Mappings" ;
     linkml:types [ a linkml:TypeDefinition ;
-            linkml:base "NodeIdentifier" ;
-            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
-            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:base "XSDDateTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
+            linkml:description "The combination of a date and time" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "nodeidentifier" ;
+            linkml:name "datetime" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "int" ;
-            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
-            linkml:description "An integer" ;
+            linkml:base "Bool" ;
+            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
+            linkml:description "A binary (true or false) value" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "integer" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
+            linkml:name "boolean" ;
+            linkml:repr "bool" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Double" ;
+            linkml:description "A real number that conforms to the xsd:double specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+            linkml:name "double" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "ElementIdentifier" ;
-            linkml:comments "Used for inheritence and type checking" ;
-            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
-            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Float" ;
+            linkml:description "A real number that conforms to the xsd:float specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "objectidentifier" ;
+            linkml:name "float" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uri" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#iri" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
             linkml:base "NCName" ;
             linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
@@ -156,22 +162,23 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "Bool" ;
-            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
-            linkml:description "A binary (true or false) value" ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "boolean" ;
-            linkml:repr "bool" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Float" ;
-            linkml:description "A real number that conforms to the xsd:float specification" ;
+            linkml:base "ElementIdentifier" ;
+            linkml:comments "Used for inheritence and type checking" ;
+            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
+            linkml:description "A URI or CURIE that represents an object in the model." ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "float" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
+            linkml:name "objectidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#iri" ],
         [ a linkml:TypeDefinition ;
             linkml:base "Decimal" ;
             linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
@@ -180,14 +187,6 @@
             linkml:imported_from "linkml:types" ;
             linkml:name "decimal" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "str" ;
-            linkml:definition_uri "https://w3id.org/linkml/String" ;
-            linkml:description "A character string" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "string" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
             linkml:base "XSDDate" ;
             linkml:definition_uri "https://w3id.org/linkml/Date" ;
@@ -199,12 +198,13 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDDateTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
-            linkml:description "The combination of a date and time" ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "datetime" ;
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
@@ -217,22 +217,22 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Double" ;
-            linkml:description "A real number that conforms to the xsd:double specification" ;
+            linkml:base "int" ;
+            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
+            linkml:description "An integer" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "double" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
+            linkml:name "integer" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "URI" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
-            linkml:description "a complete URI" ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uri" ;
+            linkml:name "nodeidentifier" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ] ;
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/mappings.ttl b/linkml_model/rdf/mappings.ttl
index 0607fbb4..87faa189 100644
--- a/linkml_model/rdf/mappings.ttl
+++ b/linkml_model/rdf/mappings.ttl
@@ -16,37 +16,21 @@
         "rdfs",
         "skos",
         "xsd" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/mappings" ;
     linkml:imports "linkml:types" ;
     linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
     linkml:metamodel_version "1.7.0" ;
     linkml:name "mappings" ;
-    linkml:prefixes [ linkml:prefix_prefix "linkml" ;
-            linkml:prefix_reference "https://w3id.org/linkml/" ],
+    linkml:prefixes [ linkml:prefix_prefix "skos" ;
+            linkml:prefix_reference "http://www.w3.org/2004/02/skos/core#" ],
         [ linkml:prefix_prefix "OIO" ;
             linkml:prefix_reference "http://www.geneontology.org/formats/oboInOwl#" ],
+        [ linkml:prefix_prefix "linkml" ;
+            linkml:prefix_reference "https://w3id.org/linkml/" ],
         [ linkml:prefix_prefix "IAO" ;
-            linkml:prefix_reference "http://purl.obolibrary.org/obo/IAO_" ],
-        [ linkml:prefix_prefix "skos" ;
-            linkml:prefix_reference "http://www.w3.org/2004/02/skos/core#" ] ;
+            linkml:prefix_reference "http://purl.obolibrary.org/obo/IAO_" ] ;
     linkml:slots [ a linkml:SlotDefinition ;
-            skos:mappingRelation <http://purl.obolibrary.org/obo/IAO_0100001> ;
-            linkml:definition_uri "https://w3id.org/linkml/deprecated_element_has_exact_replacement" ;
-            linkml:description "When an element is deprecated, it can be automatically replaced by this uri or curie" ;
-            linkml:from_schema "https://w3id.org/linkml/mappings" ;
-            linkml:name "deprecated_element_has_exact_replacement" ;
-            linkml:range "uriorcurie" ;
-            linkml:slot_uri "https://w3id.org/linkml/deprecated_element_has_exact_replacement" ],
-        [ a linkml:SlotDefinition ;
-            skos:mappingRelation OIO:consider ;
-            linkml:definition_uri "https://w3id.org/linkml/deprecated_element_has_possible_replacement" ;
-            linkml:description "When an element is deprecated, it can be potentially replaced by this uri or curie" ;
-            linkml:from_schema "https://w3id.org/linkml/mappings" ;
-            linkml:name "deprecated_element_has_possible_replacement" ;
-            linkml:range "uriorcurie" ;
-            linkml:slot_uri "https://w3id.org/linkml/deprecated_element_has_possible_replacement" ],
-        [ a linkml:SlotDefinition ;
             skos:mappingRelation skos:exactMatch ;
             linkml:definition_uri "https://w3id.org/linkml/exact_mappings" ;
             linkml:description "A list of terms from different schemas or terminology systems that have identical meaning." ;
@@ -56,16 +40,6 @@
             linkml:name "exact_mappings" ;
             linkml:range "uriorcurie" ;
             linkml:slot_uri "http://www.w3.org/2004/02/skos/core#exactMatch" ],
-        [ a linkml:SlotDefinition ;
-            skos:mappingRelation skos:broadMatch ;
-            linkml:definition_uri "https://w3id.org/linkml/broad_mappings" ;
-            linkml:description "A list of terms from different schemas or terminology systems that have broader meaning." ;
-            linkml:from_schema "https://w3id.org/linkml/mappings" ;
-            linkml:is_a "mappings" ;
-            linkml:multivalued true ;
-            linkml:name "broad_mappings" ;
-            linkml:range "uriorcurie" ;
-            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#broadMatch" ],
         [ a linkml:SlotDefinition ;
             skos:mappingRelation skos:closeMatch ;
             linkml:definition_uri "https://w3id.org/linkml/close_mappings" ;
@@ -86,6 +60,23 @@
             linkml:name "related_mappings" ;
             linkml:range "uriorcurie" ;
             linkml:slot_uri "http://www.w3.org/2004/02/skos/core#relatedMatch" ],
+        [ a linkml:SlotDefinition ;
+            skos:mappingRelation skos:mappingRelation ;
+            linkml:definition_uri "https://w3id.org/linkml/mappings" ;
+            linkml:description "A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective." ;
+            linkml:from_schema "https://w3id.org/linkml/mappings" ;
+            linkml:multivalued true ;
+            linkml:name "mappings" ;
+            linkml:range "uriorcurie" ;
+            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#mappingRelation" ],
+        [ a linkml:SlotDefinition ;
+            skos:mappingRelation OIO:consider ;
+            linkml:definition_uri "https://w3id.org/linkml/deprecated_element_has_possible_replacement" ;
+            linkml:description "When an element is deprecated, it can be potentially replaced by this uri or curie" ;
+            linkml:from_schema "https://w3id.org/linkml/mappings" ;
+            linkml:name "deprecated_element_has_possible_replacement" ;
+            linkml:range "uriorcurie" ;
+            linkml:slot_uri "https://w3id.org/linkml/deprecated_element_has_possible_replacement" ],
         [ a linkml:SlotDefinition ;
             skos:mappingRelation skos:narrowMatch ;
             linkml:definition_uri "https://w3id.org/linkml/narrow_mappings" ;
@@ -97,37 +88,35 @@
             linkml:range "uriorcurie" ;
             linkml:slot_uri "http://www.w3.org/2004/02/skos/core#narrowMatch" ],
         [ a linkml:SlotDefinition ;
-            skos:mappingRelation skos:mappingRelation ;
-            linkml:definition_uri "https://w3id.org/linkml/mappings" ;
-            linkml:description "A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective." ;
+            skos:mappingRelation <http://purl.obolibrary.org/obo/IAO_0100001> ;
+            linkml:definition_uri "https://w3id.org/linkml/deprecated_element_has_exact_replacement" ;
+            linkml:description "When an element is deprecated, it can be automatically replaced by this uri or curie" ;
+            linkml:from_schema "https://w3id.org/linkml/mappings" ;
+            linkml:name "deprecated_element_has_exact_replacement" ;
+            linkml:range "uriorcurie" ;
+            linkml:slot_uri "https://w3id.org/linkml/deprecated_element_has_exact_replacement" ],
+        [ a linkml:SlotDefinition ;
+            skos:mappingRelation skos:broadMatch ;
+            linkml:definition_uri "https://w3id.org/linkml/broad_mappings" ;
+            linkml:description "A list of terms from different schemas or terminology systems that have broader meaning." ;
             linkml:from_schema "https://w3id.org/linkml/mappings" ;
+            linkml:is_a "mappings" ;
             linkml:multivalued true ;
-            linkml:name "mappings" ;
+            linkml:name "broad_mappings" ;
             linkml:range "uriorcurie" ;
-            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#mappingRelation" ] ;
+            linkml:slot_uri "http://www.w3.org/2004/02/skos/core#broadMatch" ] ;
     linkml:source_file "mappings.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 2656 ;
     linkml:title "LinkML Schema Mappings" ;
     linkml:types [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "URIorCURIE" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
-            linkml:description "a URI or a CURIE" ;
+            linkml:base "int" ;
+            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
+            linkml:description "An integer" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uriorcurie" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+            linkml:name "integer" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
         [ a linkml:TypeDefinition ;
             linkml:base "ElementIdentifier" ;
             linkml:comments "Used for inheritence and type checking" ;
@@ -139,32 +128,24 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/ns/shex#iri" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "NodeIdentifier" ;
-            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
-            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:base "NCName" ;
+            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
+            linkml:description "Prefix part of CURIE" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "nodeidentifier" ;
+            linkml:name "ncname" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "Decimal" ;
-            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
-            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:imported_from "linkml:types" ;
-            linkml:name "decimal" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDDate" ;
-            linkml:definition_uri "https://w3id.org/linkml/Date" ;
-            linkml:description "a date (year, month and day) in an idealized calendar" ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "date" ;
+            linkml:name "time" ;
             linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
         [ a linkml:TypeDefinition ;
             linkml:base "XSDDateTime" ;
             linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
@@ -183,22 +164,31 @@
             linkml:name "double" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "NCName" ;
-            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
-            linkml:description "Prefix part of CURIE" ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "ncname" ;
+            linkml:name "uri" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Float" ;
-            linkml:description "A real number that conforms to the xsd:float specification" ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "float" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
+            linkml:name "nodeidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
             linkml:base "Bool" ;
             linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
@@ -209,30 +199,40 @@
             linkml:repr "bool" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "int" ;
-            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
-            linkml:description "An integer" ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Float" ;
+            linkml:description "A real number that conforms to the xsd:float specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "integer" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
+            linkml:name "float" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "URI" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
-            linkml:description "a complete URI" ;
+            linkml:base "XSDDate" ;
+            linkml:definition_uri "https://w3id.org/linkml/Date" ;
+            linkml:description "a date (year, month and day) in an idealized calendar" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "uri" ;
+            linkml:name "date" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URIorCURIE" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
+            linkml:description "a URI or a CURIE" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uriorcurie" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "str" ;
-            linkml:definition_uri "https://w3id.org/linkml/String" ;
-            linkml:description "A character string" ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
             linkml:imported_from "linkml:types" ;
-            linkml:name "string" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ] ;
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/meta.model.ttl b/linkml_model/rdf/meta.model.ttl
index 837673c9..fee4ea00 100644
--- a/linkml_model/rdf/meta.model.ttl
+++ b/linkml_model/rdf/meta.model.ttl
@@ -315,18 +315,6 @@ linkml:subproperty_of a linkml:SlotDefinition ;
     linkml:range linkml:SlotDefinition ;
     linkml:slot_uri rdfs:subPropertyOf .
 
-linkml:title a linkml:SlotDefinition ;
-    OIO:inSubset linkml:owl ;
-    skos:definition "the official title of the schema" ;
-    skos:inScheme linkml:meta ;
-    skos:mappingRelation dcterms:title ;
-    linkml:definition_uri linkml:title ;
-    linkml:domain linkml:SchemaDefinition ;
-    linkml:domain_of linkml:SchemaDefinition ;
-    linkml:owner linkml:SchemaDefinition ;
-    linkml:range linkml:string ;
-    linkml:slot_uri dcterms:title .
-
 linkml:type_uri a linkml:SlotDefinition ;
     skos:definition "The uri that defines the possible values for the type definition" ;
     skos:inScheme linkml:meta ;
@@ -1223,6 +1211,7 @@ linkml:SubsetDefinition a linkml:ClassDefinition ;
         linkml:notes,
         linkml:related_mappings,
         linkml:see_also,
+        linkml:title,
         linkml:todos .
 
 linkml:abstract a linkml:SlotDefinition ;
@@ -1521,6 +1510,18 @@ linkml:related_mappings a linkml:SlotDefinition ;
     linkml:range linkml:uriorcurie ;
     linkml:slot_uri skos:relatedMatch .
 
+linkml:title a linkml:SlotDefinition ;
+    OIO:inSubset linkml:owl ;
+    skos:definition "the official title of the element" ;
+    skos:inScheme linkml:meta ;
+    skos:mappingRelation dcterms:title ;
+    linkml:definition_uri linkml:title ;
+    linkml:domain linkml:Element ;
+    linkml:domain_of linkml:Element ;
+    linkml:owner linkml:Element ;
+    linkml:range linkml:string ;
+    linkml:slot_uri dcterms:title .
+
 linkml:Example a linkml:ClassDefinition ;
     skos:definition "usage example and description" ;
     skos:inScheme linkml:meta ;
@@ -1802,6 +1803,7 @@ linkml:EnumDefinition a linkml:ClassDefinition ;
         linkml:pv_formula,
         linkml:related_mappings,
         linkml:see_also,
+        linkml:title,
         linkml:todos .
 
 linkml:PermissibleValue a linkml:ClassDefinition ;
@@ -1951,6 +1953,7 @@ linkml:TypeDefinition a linkml:ClassDefinition ;
         linkml:related_mappings,
         linkml:repr,
         linkml:see_also,
+        linkml:title,
         linkml:todos,
         linkml:type_uri,
         linkml:typeof .
@@ -2000,6 +2003,7 @@ linkml:Definition a linkml:ClassDefinition ;
         linkml:see_also,
         linkml:status,
         linkml:string_serialization,
+        linkml:title,
         linkml:todos,
         linkml:values_from .
 
@@ -2047,6 +2051,7 @@ linkml:Element a linkml:ClassDefinition ;
         linkml:notes,
         linkml:related_mappings,
         linkml:see_also,
+        linkml:title,
         linkml:todos .
 
 linkml:ClassDefinition a linkml:ClassDefinition ;
@@ -2104,6 +2109,7 @@ linkml:ClassDefinition a linkml:ClassDefinition ;
         linkml:status,
         linkml:string_serialization,
         linkml:subclass_of,
+        linkml:title,
         linkml:todos,
         linkml:tree_root,
         linkml:union_of,
@@ -2203,27 +2209,27 @@ linkml:meta a linkml:SchemaDefinition ;
         "skos",
         "xsd" ;
     linkml:enums linkml:pv_formula_options ;
-    linkml:generation_date "2021-09-17 20:24"^^xsd:dateTime ;
+    linkml:generation_date "2021-09-24 02:31"^^xsd:dateTime ;
     linkml:id linkml:meta ;
     linkml:imports linkml:annotations,
         linkml:extensions,
         linkml:mappings,
         linkml:types ;
     linkml:metamodel_version "1.7.0" ;
-    linkml:prefixes [ linkml:prefix_prefix "linkml" ;
-            linkml:prefix_reference linkml: ],
+    linkml:prefixes [ linkml:prefix_prefix "oslc" ;
+            linkml:prefix_reference oslc: ],
         [ linkml:prefix_prefix "OIO" ;
             linkml:prefix_reference OIO: ],
-        [ linkml:prefix_prefix "pav" ;
-            linkml:prefix_reference pav: ],
         [ linkml:prefix_prefix "skos" ;
             linkml:prefix_reference skos: ],
+        [ linkml:prefix_prefix "pav" ;
+            linkml:prefix_reference pav: ],
         [ linkml:prefix_prefix "bibo" ;
             linkml:prefix_reference bibo: ],
+        [ linkml:prefix_prefix "linkml" ;
+            linkml:prefix_reference linkml: ],
         [ linkml:prefix_prefix "schema" ;
-            linkml:prefix_reference schema: ],
-        [ linkml:prefix_prefix "oslc" ;
-            linkml:prefix_reference oslc: ] ;
+            linkml:prefix_reference schema: ] ;
     linkml:slots linkml:abstract,
         linkml:alias,
         linkml:aliases,
@@ -2351,8 +2357,8 @@ linkml:meta a linkml:SchemaDefinition ;
         linkml:values_from,
         linkml:version ;
     linkml:source_file "meta.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021"^^xsd:dateTime ;
-    linkml:source_file_size 34577 ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021"^^xsd:dateTime ;
+    linkml:source_file_size 34568 ;
     linkml:subsets linkml:owl ;
     linkml:types linkml:boolean,
         linkml:date,
@@ -2446,6 +2452,7 @@ linkml:SlotDefinition a linkml:ClassDefinition ;
         linkml:string_serialization,
         linkml:subproperty_of,
         linkml:symmetric,
+        linkml:title,
         linkml:todos,
         linkml:usage_slot_name,
         linkml:values_from .
diff --git a/linkml_model/rdf/meta.ttl b/linkml_model/rdf/meta.ttl
index f625eaa2..2312f515 100644
--- a/linkml_model/rdf/meta.ttl
+++ b/linkml_model/rdf/meta.ttl
@@ -315,18 +315,6 @@ linkml:subproperty_of a linkml:SlotDefinition ;
     linkml:range linkml:SlotDefinition ;
     linkml:slot_uri rdfs:subPropertyOf .
 
-linkml:title a linkml:SlotDefinition ;
-    OIO:inSubset linkml:owl ;
-    skos:definition "the official title of the schema" ;
-    skos:inScheme linkml:meta ;
-    skos:mappingRelation dcterms:title ;
-    linkml:definition_uri linkml:title ;
-    linkml:domain linkml:SchemaDefinition ;
-    linkml:domain_of linkml:SchemaDefinition ;
-    linkml:owner linkml:SchemaDefinition ;
-    linkml:range linkml:string ;
-    linkml:slot_uri dcterms:title .
-
 linkml:type_uri a linkml:SlotDefinition ;
     skos:definition "The uri that defines the possible values for the type definition" ;
     skos:inScheme linkml:meta ;
@@ -1223,6 +1211,7 @@ linkml:SubsetDefinition a linkml:ClassDefinition ;
         linkml:notes,
         linkml:related_mappings,
         linkml:see_also,
+        linkml:title,
         linkml:todos .
 
 linkml:abstract a linkml:SlotDefinition ;
@@ -1521,6 +1510,18 @@ linkml:related_mappings a linkml:SlotDefinition ;
     linkml:range linkml:uriorcurie ;
     linkml:slot_uri skos:relatedMatch .
 
+linkml:title a linkml:SlotDefinition ;
+    OIO:inSubset linkml:owl ;
+    skos:definition "the official title of the element" ;
+    skos:inScheme linkml:meta ;
+    skos:mappingRelation dcterms:title ;
+    linkml:definition_uri linkml:title ;
+    linkml:domain linkml:Element ;
+    linkml:domain_of linkml:Element ;
+    linkml:owner linkml:Element ;
+    linkml:range linkml:string ;
+    linkml:slot_uri dcterms:title .
+
 linkml:Example a linkml:ClassDefinition ;
     skos:definition "usage example and description" ;
     skos:inScheme linkml:meta ;
@@ -1802,6 +1803,7 @@ linkml:EnumDefinition a linkml:ClassDefinition ;
         linkml:pv_formula,
         linkml:related_mappings,
         linkml:see_also,
+        linkml:title,
         linkml:todos .
 
 linkml:PermissibleValue a linkml:ClassDefinition ;
@@ -1951,6 +1953,7 @@ linkml:TypeDefinition a linkml:ClassDefinition ;
         linkml:related_mappings,
         linkml:repr,
         linkml:see_also,
+        linkml:title,
         linkml:todos,
         linkml:type_uri,
         linkml:typeof .
@@ -2000,6 +2003,7 @@ linkml:Definition a linkml:ClassDefinition ;
         linkml:see_also,
         linkml:status,
         linkml:string_serialization,
+        linkml:title,
         linkml:todos,
         linkml:values_from .
 
@@ -2047,6 +2051,7 @@ linkml:Element a linkml:ClassDefinition ;
         linkml:notes,
         linkml:related_mappings,
         linkml:see_also,
+        linkml:title,
         linkml:todos .
 
 linkml:ClassDefinition a linkml:ClassDefinition ;
@@ -2104,6 +2109,7 @@ linkml:ClassDefinition a linkml:ClassDefinition ;
         linkml:status,
         linkml:string_serialization,
         linkml:subclass_of,
+        linkml:title,
         linkml:todos,
         linkml:tree_root,
         linkml:union_of,
@@ -2203,23 +2209,23 @@ linkml:meta a linkml:SchemaDefinition ;
         "skos",
         "xsd" ;
     linkml:enums linkml:pv_formula_options ;
-    linkml:generation_date "2021-09-17 20:24"^^xsd:dateTime ;
+    linkml:generation_date "2021-09-24 02:31"^^xsd:dateTime ;
     linkml:id linkml:meta ;
     linkml:imports linkml:annotations,
         linkml:extensions,
         linkml:mappings,
         linkml:types ;
     linkml:metamodel_version "1.7.0" ;
-    linkml:prefixes [ linkml:prefix_prefix "bibo" ;
-            linkml:prefix_reference bibo: ],
-        [ linkml:prefix_prefix "OIO" ;
-            linkml:prefix_reference OIO: ],
-        [ linkml:prefix_prefix "oslc" ;
-            linkml:prefix_reference oslc: ],
-        [ linkml:prefix_prefix "pav" ;
+    linkml:prefixes [ linkml:prefix_prefix "pav" ;
             linkml:prefix_reference pav: ],
+        [ linkml:prefix_prefix "bibo" ;
+            linkml:prefix_reference bibo: ],
         [ linkml:prefix_prefix "schema" ;
             linkml:prefix_reference schema: ],
+        [ linkml:prefix_prefix "oslc" ;
+            linkml:prefix_reference oslc: ],
+        [ linkml:prefix_prefix "OIO" ;
+            linkml:prefix_reference OIO: ],
         [ linkml:prefix_prefix "linkml" ;
             linkml:prefix_reference linkml: ],
         [ linkml:prefix_prefix "skos" ;
@@ -2351,8 +2357,8 @@ linkml:meta a linkml:SchemaDefinition ;
         linkml:values_from,
         linkml:version ;
     linkml:source_file "meta.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021"^^xsd:dateTime ;
-    linkml:source_file_size 34577 ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021"^^xsd:dateTime ;
+    linkml:source_file_size 34568 ;
     linkml:subsets linkml:owl ;
     linkml:types linkml:boolean,
         linkml:date,
@@ -2446,6 +2452,7 @@ linkml:SlotDefinition a linkml:ClassDefinition ;
         linkml:string_serialization,
         linkml:subproperty_of,
         linkml:symmetric,
+        linkml:title,
         linkml:todos,
         linkml:usage_slot_name,
         linkml:values_from .
diff --git a/linkml_model/rdf/types.model.ttl b/linkml_model/rdf/types.model.ttl
index 596fe5f3..e613a10d 100644
--- a/linkml_model/rdf/types.model.ttl
+++ b/linkml_model/rdf/types.model.ttl
@@ -6,22 +6,29 @@
     linkml:default_prefix "linkml" ;
     linkml:default_range "string" ;
     linkml:description "Shared type definitions for the core LinkML mode and metamodel" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/types" ;
     linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
     linkml:metamodel_version "1.7.0" ;
     linkml:name "types" ;
-    linkml:prefixes [ linkml:prefix_prefix "shex" ;
-            linkml:prefix_reference "http://www.w3.org/ns/shex#" ],
-        [ linkml:prefix_prefix "linkml" ;
+    linkml:prefixes [ linkml:prefix_prefix "linkml" ;
             linkml:prefix_reference "https://w3id.org/linkml/" ],
         [ linkml:prefix_prefix "xsd" ;
-            linkml:prefix_reference "http://www.w3.org/2001/XMLSchema#" ] ;
+            linkml:prefix_reference "http://www.w3.org/2001/XMLSchema#" ],
+        [ linkml:prefix_prefix "shex" ;
+            linkml:prefix_reference "http://www.w3.org/ns/shex#" ] ;
     linkml:source_file "types.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 2676 ;
     linkml:title "Core LinkML metamodel types" ;
     linkml:types [ a linkml:TypeDefinition ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
             linkml:base "ElementIdentifier" ;
             linkml:comments "Used for inheritence and type checking" ;
             linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
@@ -47,29 +54,19 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDDateTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
-            linkml:description "The combination of a date and time" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "datetime" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "str" ;
-            linkml:definition_uri "https://w3id.org/linkml/String" ;
-            linkml:description "A character string" ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "string" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Double" ;
+            linkml:description "A real number that conforms to the xsd:double specification" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+            linkml:name "double" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
         [ a linkml:TypeDefinition ;
             linkml:base "Bool" ;
             linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
@@ -78,6 +75,14 @@
             linkml:name "boolean" ;
             linkml:repr "bool" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "nodeidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
         [ a linkml:TypeDefinition ;
             linkml:base "NCName" ;
             linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
@@ -87,12 +92,22 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Double" ;
-            linkml:description "A real number that conforms to the xsd:double specification" ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "double" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "uri" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
             linkml:base "URIorCURIE" ;
             linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
@@ -109,28 +124,13 @@
             linkml:name "integer" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "NodeIdentifier" ;
-            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
-            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "nodeidentifier" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "Decimal" ;
-            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
-            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "decimal" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "URI" ;
-            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
-            linkml:description "a complete URI" ;
+            linkml:base "XSDDateTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
+            linkml:description "The combination of a date and time" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "uri" ;
+            linkml:name "datetime" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ] ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/types.ttl b/linkml_model/rdf/types.ttl
index 2eec3aec..99335b09 100644
--- a/linkml_model/rdf/types.ttl
+++ b/linkml_model/rdf/types.ttl
@@ -6,22 +6,37 @@
     linkml:default_prefix "linkml" ;
     linkml:default_range "string" ;
     linkml:description "Shared type definitions for the core LinkML mode and metamodel" ;
-    linkml:generation_date "2021-09-17 20:24" ;
+    linkml:generation_date "2021-09-24 02:31" ;
     linkml:id "https://w3id.org/linkml/types" ;
     linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
     linkml:metamodel_version "1.7.0" ;
     linkml:name "types" ;
-    linkml:prefixes [ linkml:prefix_prefix "linkml" ;
-            linkml:prefix_reference "https://w3id.org/linkml/" ],
-        [ linkml:prefix_prefix "shex" ;
+    linkml:prefixes [ linkml:prefix_prefix "shex" ;
             linkml:prefix_reference "http://www.w3.org/ns/shex#" ],
+        [ linkml:prefix_prefix "linkml" ;
+            linkml:prefix_reference "https://w3id.org/linkml/" ],
         [ linkml:prefix_prefix "xsd" ;
             linkml:prefix_reference "http://www.w3.org/2001/XMLSchema#" ] ;
     linkml:source_file "types.yaml" ;
-    linkml:source_file_date "Fri Sep 17 20:22:48 2021" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
     linkml:source_file_size 2676 ;
     linkml:title "Core LinkML metamodel types" ;
     linkml:types [ a linkml:TypeDefinition ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDDateTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
+            linkml:description "The combination of a date and time" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "datetime" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
             linkml:base "ElementIdentifier" ;
             linkml:comments "Used for inheritence and type checking" ;
             linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
@@ -30,6 +45,51 @@
             linkml:name "objectidentifier" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/ns/shex#iri" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Bool" ;
+            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
+            linkml:description "A binary (true or false) value" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "boolean" ;
+            linkml:repr "bool" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDDate" ;
+            linkml:definition_uri "https://w3id.org/linkml/Date" ;
+            linkml:description "a date (year, month and day) in an idealized calendar" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "date" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Double" ;
+            linkml:description "A real number that conforms to the xsd:double specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "double" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Float" ;
+            linkml:description "A real number that conforms to the xsd:float specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "float" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "int" ;
+            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
+            linkml:description "An integer" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:name "integer" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
         [ a linkml:TypeDefinition ;
             linkml:base "NCName" ;
             linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
@@ -54,51 +114,6 @@
             linkml:name "uri" ;
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "XSDTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Time" ;
-            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "time" ;
-            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Float" ;
-            linkml:description "A real number that conforms to the xsd:float specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "float" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "float" ;
-            linkml:definition_uri "https://w3id.org/linkml/Double" ;
-            linkml:description "A real number that conforms to the xsd:double specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "double" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "Decimal" ;
-            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
-            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "decimal" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "XSDDateTime" ;
-            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
-            linkml:description "The combination of a date and time" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "datetime" ;
-            linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "str" ;
-            linkml:definition_uri "https://w3id.org/linkml/String" ;
-            linkml:description "A character string" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "string" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
         [ a linkml:TypeDefinition ;
             linkml:base "URIorCURIE" ;
             linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
@@ -108,29 +123,14 @@
             linkml:repr "str" ;
             linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
         [ a linkml:TypeDefinition ;
-            linkml:base "int" ;
-            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
-            linkml:description "An integer" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "integer" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "Bool" ;
-            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
-            linkml:description "A binary (true or false) value" ;
-            linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "boolean" ;
-            linkml:repr "bool" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
-        [ a linkml:TypeDefinition ;
-            linkml:base "XSDDate" ;
-            linkml:definition_uri "https://w3id.org/linkml/Date" ;
-            linkml:description "a date (year, month and day) in an idealized calendar" ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
             linkml:from_schema "https://w3id.org/linkml/types" ;
-            linkml:name "date" ;
+            linkml:name "time" ;
             linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
             linkml:repr "str" ;
-            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ] ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ] ;
     linkml:version "2.0.0" .
 
 
diff --git a/linkml_model/rdf/validation.model.ttl b/linkml_model/rdf/validation.model.ttl
new file mode 100644
index 00000000..f4b8082a
--- /dev/null
+++ b/linkml_model/rdf/validation.model.ttl
@@ -0,0 +1,300 @@
+@prefix : <https://w3id.org/linkml/> .
+@prefix linkml: <https://w3id.org/linkml/> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+
+[] a linkml:SchemaDefinition ;
+    linkml:classes [ a linkml:ClassDefinition ;
+            linkml:attributes [ a linkml:SlotDefinition ;
+                    linkml:multivalued true ;
+                    linkml:name "results" ;
+                    linkml:range "ValidationResult" ] ;
+            linkml:class_uri "https://w3id.org/shacl/ValidationReport" ;
+            linkml:definition_uri "https://w3id.org/linkml/reportValidationReport" ;
+            linkml:description "A report object" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:mappings "sh:ValidationReport" ;
+            linkml:name "ValidationReport" ;
+            linkml:slot_usage [ ] ;
+            linkml:slots "validationReport__results" ;
+            linkml:todos "add prov object" ],
+        [ a linkml:ClassDefinition ;
+            linkml:class_uri "https://w3id.org/shacl/ValidationResult" ;
+            linkml:definition_uri "https://w3id.org/linkml/reportValidationResult" ;
+            linkml:description "An individual result arising from validation of a data instance using a particular rule" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:mappings "sh:ValidationResult" ;
+            linkml:name "ValidationResult" ;
+            linkml:slot_usage [ ] ;
+            linkml:slots "info",
+                "instantiates",
+                "object",
+                "object_str",
+                "predicate",
+                "severity",
+                "source",
+                "subject",
+                "type" ] ;
+    linkml:default_curi_maps "semweb_context" ;
+    linkml:default_prefix "reporting" ;
+    linkml:default_range "string" ;
+    linkml:description "A datamodel for reports on data" ;
+    linkml:emit_prefixes "linkml",
+        "owl",
+        "rdf",
+        "rdfs",
+        "xsd" ;
+    linkml:enums [ linkml:definition_uri "https://w3id.org/linkml/reportProblemType" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "problem_type" ;
+            linkml:permissible_values [ linkml:description "Applies when the value of a slot is inconsistent with the declared range" ;
+                    linkml:text "slot_range_violation" ],
+                [ linkml:description "Applies when a slot is used in data but the slot is undeclared in the datamodel" ;
+                    linkml:text "undeclared_slot" ],
+                [ linkml:description "The data could not be parsed" ;
+                    linkml:text "parsing_error" ],
+                [ linkml:description "Applies when an instance of a class has a required slot which is not filled in" ;
+                    linkml:text "missing_slot_value" ],
+                [ linkml:description "Applies when a slot is used in an instance of a class where the slot is not applicable for that class" ;
+                    linkml:text "inapplicable_slot" ] ],
+        [ linkml:definition_uri "https://w3id.org/linkml/reportSeverityOptions" ;
+            linkml:exact_mappings "sh:Severity" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "severity_options" ;
+            linkml:permissible_values [ linkml:text "FATAL" ],
+                [ linkml:meaning "sh:Warning" ;
+                    linkml:text "WARNING" ],
+                [ linkml:meaning "sh:Info" ;
+                    linkml:text "INFO" ],
+                [ linkml:meaning "sh:Violation" ;
+                    linkml:text "ERROR" ] ] ;
+    linkml:generation_date "2021-09-24 02:31" ;
+    linkml:id "https://w3id.org/linkml/reporting" ;
+    linkml:imports "linkml:types" ;
+    linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
+    linkml:metamodel_version "1.7.0" ;
+    linkml:name "reporting" ;
+    linkml:prefixes [ linkml:prefix_prefix "skos" ;
+            linkml:prefix_reference "http://www.w3.org/2004/02/skos/core#" ],
+        [ linkml:prefix_prefix "linkml" ;
+            linkml:prefix_reference "https://w3id.org/linkml/" ],
+        [ linkml:prefix_prefix "sh" ;
+            linkml:prefix_reference "https://w3id.org/shacl/" ],
+        [ linkml:prefix_prefix "reporting" ;
+            linkml:prefix_reference "https://w3id.org/linkml/report" ],
+        [ linkml:prefix_prefix "schema" ;
+            linkml:prefix_reference "http://schema.org/" ],
+        [ linkml:prefix_prefix "pav" ;
+            linkml:prefix_reference "http://purl.org/pav/" ] ;
+    linkml:slots [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportobject_str" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "object_str" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "string" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportobject_str" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportpredicate" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "predicate" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportpredicate" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportinstantiates" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "instantiates" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportinstantiates" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportseverity" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "severity" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "severity_options" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportseverity" ],
+        [ a linkml:SlotDefinition ;
+            linkml:alias "results" ;
+            linkml:domain_of "ValidationReport" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:inlined true ;
+            linkml:multivalued true ;
+            linkml:name "validationReport__results" ;
+            linkml:owner "ValidationReport" ;
+            linkml:range "ValidationResult" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportresults" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportsubject" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "subject" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportsubject" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reporttype" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "type" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "problem_type" ;
+            linkml:slot_uri "https://w3id.org/linkml/reporttype" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportobject" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "object" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportobject" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportsource" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "source" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportsource" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportinfo" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "info" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "string" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportinfo" ] ;
+    linkml:source_file "validation.yaml" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
+    linkml:source_file_size 2645 ;
+    linkml:title "LinkML Report Metamodel" ;
+    linkml:types [ a linkml:TypeDefinition ;
+            linkml:base "XSDDate" ;
+            linkml:definition_uri "https://w3id.org/linkml/Date" ;
+            linkml:description "a date (year, month and day) in an idealized calendar" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "date" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDDateTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
+            linkml:description "The combination of a date and time" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "datetime" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URIorCURIE" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
+            linkml:description "a URI or a CURIE" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uriorcurie" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "int" ;
+            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
+            linkml:description "An integer" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "integer" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "nodeidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "ElementIdentifier" ;
+            linkml:comments "Used for inheritence and type checking" ;
+            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
+            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "objectidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#iri" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Double" ;
+            linkml:description "A real number that conforms to the xsd:double specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "double" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Float" ;
+            linkml:description "A real number that conforms to the xsd:float specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "float" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Bool" ;
+            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
+            linkml:description "A binary (true or false) value" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "boolean" ;
+            linkml:repr "bool" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uri" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "NCName" ;
+            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
+            linkml:description "Prefix part of CURIE" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "ncname" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ] .
+
+
+
diff --git a/linkml_model/rdf/validation.ttl b/linkml_model/rdf/validation.ttl
new file mode 100644
index 00000000..a03442f0
--- /dev/null
+++ b/linkml_model/rdf/validation.ttl
@@ -0,0 +1,300 @@
+@prefix : <https://w3id.org/linkml/> .
+@prefix linkml: <https://w3id.org/linkml/> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+
+[] a linkml:SchemaDefinition ;
+    linkml:classes [ a linkml:ClassDefinition ;
+            linkml:class_uri "https://w3id.org/shacl/ValidationResult" ;
+            linkml:definition_uri "https://w3id.org/linkml/reportValidationResult" ;
+            linkml:description "An individual result arising from validation of a data instance using a particular rule" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:mappings "sh:ValidationResult" ;
+            linkml:name "ValidationResult" ;
+            linkml:slot_usage [ ] ;
+            linkml:slots "info",
+                "instantiates",
+                "object",
+                "object_str",
+                "predicate",
+                "severity",
+                "source",
+                "subject",
+                "type" ],
+        [ a linkml:ClassDefinition ;
+            linkml:attributes [ a linkml:SlotDefinition ;
+                    linkml:multivalued true ;
+                    linkml:name "results" ;
+                    linkml:range "ValidationResult" ] ;
+            linkml:class_uri "https://w3id.org/shacl/ValidationReport" ;
+            linkml:definition_uri "https://w3id.org/linkml/reportValidationReport" ;
+            linkml:description "A report object" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:mappings "sh:ValidationReport" ;
+            linkml:name "ValidationReport" ;
+            linkml:slot_usage [ ] ;
+            linkml:slots "validationReport__results" ;
+            linkml:todos "add prov object" ] ;
+    linkml:default_curi_maps "semweb_context" ;
+    linkml:default_prefix "reporting" ;
+    linkml:default_range "string" ;
+    linkml:description "A datamodel for reports on data" ;
+    linkml:emit_prefixes "linkml",
+        "owl",
+        "rdf",
+        "rdfs",
+        "xsd" ;
+    linkml:enums [ linkml:definition_uri "https://w3id.org/linkml/reportProblemType" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "problem_type" ;
+            linkml:permissible_values [ linkml:description "Applies when a slot is used in an instance of a class where the slot is not applicable for that class" ;
+                    linkml:text "inapplicable_slot" ],
+                [ linkml:description "Applies when the value of a slot is inconsistent with the declared range" ;
+                    linkml:text "slot_range_violation" ],
+                [ linkml:description "Applies when an instance of a class has a required slot which is not filled in" ;
+                    linkml:text "missing_slot_value" ],
+                [ linkml:description "The data could not be parsed" ;
+                    linkml:text "parsing_error" ],
+                [ linkml:description "Applies when a slot is used in data but the slot is undeclared in the datamodel" ;
+                    linkml:text "undeclared_slot" ] ],
+        [ linkml:definition_uri "https://w3id.org/linkml/reportSeverityOptions" ;
+            linkml:exact_mappings "sh:Severity" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "severity_options" ;
+            linkml:permissible_values [ linkml:meaning "sh:Violation" ;
+                    linkml:text "ERROR" ],
+                [ linkml:meaning "sh:Warning" ;
+                    linkml:text "WARNING" ],
+                [ linkml:meaning "sh:Info" ;
+                    linkml:text "INFO" ],
+                [ linkml:text "FATAL" ] ] ;
+    linkml:generation_date "2021-09-24 02:31" ;
+    linkml:id "https://w3id.org/linkml/reporting" ;
+    linkml:imports "linkml:types" ;
+    linkml:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
+    linkml:metamodel_version "1.7.0" ;
+    linkml:name "reporting" ;
+    linkml:prefixes [ linkml:prefix_prefix "skos" ;
+            linkml:prefix_reference "http://www.w3.org/2004/02/skos/core#" ],
+        [ linkml:prefix_prefix "sh" ;
+            linkml:prefix_reference "https://w3id.org/shacl/" ],
+        [ linkml:prefix_prefix "linkml" ;
+            linkml:prefix_reference "https://w3id.org/linkml/" ],
+        [ linkml:prefix_prefix "schema" ;
+            linkml:prefix_reference "http://schema.org/" ],
+        [ linkml:prefix_prefix "pav" ;
+            linkml:prefix_reference "http://purl.org/pav/" ],
+        [ linkml:prefix_prefix "reporting" ;
+            linkml:prefix_reference "https://w3id.org/linkml/report" ] ;
+    linkml:slots [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportpredicate" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "predicate" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportpredicate" ],
+        [ a linkml:SlotDefinition ;
+            linkml:alias "results" ;
+            linkml:domain_of "ValidationReport" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:inlined true ;
+            linkml:multivalued true ;
+            linkml:name "validationReport__results" ;
+            linkml:owner "ValidationReport" ;
+            linkml:range "ValidationResult" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportresults" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reporttype" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "type" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "problem_type" ;
+            linkml:slot_uri "https://w3id.org/linkml/reporttype" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportinfo" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "info" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "string" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportinfo" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportsource" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "source" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportsource" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportinstantiates" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "instantiates" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportinstantiates" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportobject" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "object" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportobject" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportobject_str" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "object_str" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "string" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportobject_str" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportseverity" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "severity" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "severity_options" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportseverity" ],
+        [ a linkml:SlotDefinition ;
+            linkml:definition_uri "https://w3id.org/linkml/reportsubject" ;
+            linkml:domain_of "ValidationResult" ;
+            linkml:from_schema "https://w3id.org/linkml/reporting" ;
+            linkml:name "subject" ;
+            linkml:owner "ValidationResult" ;
+            linkml:range "nodeidentifier" ;
+            linkml:slot_uri "https://w3id.org/linkml/reportsubject" ] ;
+    linkml:source_file "validation.yaml" ;
+    linkml:source_file_date "Fri Sep 24 02:29:20 2021" ;
+    linkml:source_file_size 2645 ;
+    linkml:title "LinkML Report Metamodel" ;
+    linkml:types [ a linkml:TypeDefinition ;
+            linkml:base "ElementIdentifier" ;
+            linkml:comments "Used for inheritence and type checking" ;
+            linkml:definition_uri "https://w3id.org/linkml/Objectidentifier" ;
+            linkml:description "A URI or CURIE that represents an object in the model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "objectidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#iri" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Double" ;
+            linkml:description "A real number that conforms to the xsd:double specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "double" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#double" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URIorCURIE" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uriorcurie" ;
+            linkml:description "a URI or a CURIE" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uriorcurie" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDDateTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Datetime" ;
+            linkml:description "The combination of a date and time" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "datetime" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "float" ;
+            linkml:definition_uri "https://w3id.org/linkml/Float" ;
+            linkml:description "A real number that conforms to the xsd:float specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "float" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#float" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Bool" ;
+            linkml:definition_uri "https://w3id.org/linkml/Boolean" ;
+            linkml:description "A binary (true or false) value" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "boolean" ;
+            linkml:repr "bool" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#boolean" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "NCName" ;
+            linkml:definition_uri "https://w3id.org/linkml/Ncname" ;
+            linkml:description "Prefix part of CURIE" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "ncname" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "URI" ;
+            linkml:definition_uri "https://w3id.org/linkml/Uri" ;
+            linkml:description "a complete URI" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "uri" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#anyURI" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "Decimal" ;
+            linkml:definition_uri "https://w3id.org/linkml/Decimal" ;
+            linkml:description "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "decimal" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#decimal" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "NodeIdentifier" ;
+            linkml:definition_uri "https://w3id.org/linkml/Nodeidentifier" ;
+            linkml:description "A URI, CURIE or BNODE that represents a node in a model." ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "nodeidentifier" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/ns/shex#nonLiteral" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDTime" ;
+            linkml:definition_uri "https://w3id.org/linkml/Time" ;
+            linkml:description "A time object represents a (local) time of day, independent of any particular day" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "time" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#dateTime" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "str" ;
+            linkml:definition_uri "https://w3id.org/linkml/String" ;
+            linkml:description "A character string" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "string" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#string" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "XSDDate" ;
+            linkml:definition_uri "https://w3id.org/linkml/Date" ;
+            linkml:description "a date (year, month and day) in an idealized calendar" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "date" ;
+            linkml:notes "URI is dateTime because OWL reasoners don't work with straight date or time" ;
+            linkml:repr "str" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#date" ],
+        [ a linkml:TypeDefinition ;
+            linkml:base "int" ;
+            linkml:definition_uri "https://w3id.org/linkml/Integer" ;
+            linkml:description "An integer" ;
+            linkml:from_schema "https://w3id.org/linkml/types" ;
+            linkml:imported_from "linkml:types" ;
+            linkml:name "integer" ;
+            linkml:uri "http://www.w3.org/2001/XMLSchema#integer" ] .
+
+
+
diff --git a/linkml_model/shex/meta.shex b/linkml_model/shex/meta.shex
index d10d86d2..83506a88 100644
--- a/linkml_model/shex/meta.shex
+++ b/linkml_model/shex/meta.shex
@@ -136,6 +136,7 @@ PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
           rdf:type [ <Annotatable> ] ? ;
           &<CommonMetadata_tes> ;
           rdf:type [ <CommonMetadata> ] ? ;
+          dcterms:title @<String> ? ;
           <id_prefixes> @<Ncname> * ;
           <definition_uri> @<Uriorcurie> ? ;
           skos:altLabel @<String> * ;
@@ -254,7 +255,6 @@ PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
     (  $<SchemaDefinition_tes> (  &<Element_tes> ;
           rdf:type [ <Element> ] ? ;
           <id> @<Uri> ;
-          dcterms:title @<String> ? ;
           pav:version @<String> ? ;
           <imports> @<Uriorcurie> * ;
           dcterms:license @<String> ? ;
diff --git a/linkml_model/shex/meta.shexj b/linkml_model/shex/meta.shexj
index 05798cfe..3b6db070 100644
--- a/linkml_model/shex/meta.shexj
+++ b/linkml_model/shex/meta.shexj
@@ -621,6 +621,13 @@
                         },
                         "min": 0
                      },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "http://purl.org/dc/terms/title",
+                        "valueExpr": "https://w3id.org/linkml/String",
+                        "min": 0,
+                        "max": 1
+                     },
                      {
                         "type": "TripleConstraint",
                         "predicate": "https://w3id.org/linkml/id_prefixes",
@@ -1311,13 +1318,6 @@
                         "min": 1,
                         "max": 1
                      },
-                     {
-                        "type": "TripleConstraint",
-                        "predicate": "http://purl.org/dc/terms/title",
-                        "valueExpr": "https://w3id.org/linkml/String",
-                        "min": 0,
-                        "max": 1
-                     },
                      {
                         "type": "TripleConstraint",
                         "predicate": "http://purl.org/pav/version",
diff --git a/linkml_model/shex/validation.shex b/linkml_model/shex/validation.shex
new file mode 100644
index 00000000..563f4685
--- /dev/null
+++ b/linkml_model/shex/validation.shex
@@ -0,0 +1,59 @@
+BASE <https://w3id.org/linkml/report/>
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
+PREFIX linkml: <https://w3id.org/linkml/>
+PREFIX reporting: <https://w3id.org/linkml/report>
+PREFIX sh: <https://w3id.org/shacl/>
+
+
+linkml:String xsd:string
+
+linkml:Integer xsd:integer
+
+linkml:Boolean xsd:boolean
+
+linkml:Float xsd:float
+
+linkml:Double xsd:double
+
+linkml:Decimal xsd:decimal
+
+linkml:Time xsd:dateTime
+
+linkml:Date xsd:date
+
+linkml:Datetime xsd:dateTime
+
+linkml:Uriorcurie IRI
+
+linkml:Uri IRI
+
+linkml:Ncname xsd:string
+
+linkml:Objectidentifier IRI
+
+linkml:Nodeidentifier NONLITERAL
+
+reporting:ValidationReport CLOSED {
+    (  $reporting:ValidationReport_tes reporting:results @reporting:ValidationResult * ;
+       rdf:type [ sh:ValidationReport ] ?
+    )
+}
+
+reporting:ValidationResult CLOSED {
+    (  $reporting:ValidationResult_tes (  reporting:type @reporting:ProblemType ? ;
+          reporting:severity @reporting:SeverityOptions ? ;
+          reporting:subject @linkml:Nodeidentifier ? ;
+          reporting:instantiates @linkml:Nodeidentifier ? ;
+          reporting:predicate @linkml:Nodeidentifier ? ;
+          reporting:object @linkml:Nodeidentifier ? ;
+          reporting:object_str @linkml:String ? ;
+          reporting:source @linkml:Nodeidentifier ? ;
+          reporting:info @linkml:String ?
+       ) ;
+       rdf:type [ sh:ValidationResult ] ?
+    )
+}
+
+
+
diff --git a/linkml_model/shex/validation.shexj b/linkml_model/shex/validation.shexj
new file mode 100644
index 00000000..1d065a95
--- /dev/null
+++ b/linkml_model/shex/validation.shexj
@@ -0,0 +1,201 @@
+{
+   "type": "Schema",
+   "@context": [
+      "http://www.w3.org/ns/shex.jsonld",
+      {
+         "@base": "https://w3id.org/linkml/report"
+      }
+   ],
+   "shapes": [
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/String",
+         "datatype": "http://www.w3.org/2001/XMLSchema#string"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Integer",
+         "datatype": "http://www.w3.org/2001/XMLSchema#integer"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Boolean",
+         "datatype": "http://www.w3.org/2001/XMLSchema#boolean"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Float",
+         "datatype": "http://www.w3.org/2001/XMLSchema#float"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Double",
+         "datatype": "http://www.w3.org/2001/XMLSchema#double"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Decimal",
+         "datatype": "http://www.w3.org/2001/XMLSchema#decimal"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Time",
+         "datatype": "http://www.w3.org/2001/XMLSchema#dateTime"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Date",
+         "datatype": "http://www.w3.org/2001/XMLSchema#date"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Datetime",
+         "datatype": "http://www.w3.org/2001/XMLSchema#dateTime"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Uriorcurie",
+         "nodeKind": "iri"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Uri",
+         "nodeKind": "iri"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Ncname",
+         "datatype": "http://www.w3.org/2001/XMLSchema#string"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Objectidentifier",
+         "nodeKind": "iri"
+      },
+      {
+         "type": "NodeConstraint",
+         "id": "https://w3id.org/linkml/Nodeidentifier",
+         "nodeKind": "nonliteral"
+      },
+      {
+         "type": "Shape",
+         "id": "https://w3id.org/linkml/reportValidationReport",
+         "closed": true,
+         "expression": {
+            "type": "EachOf",
+            "expressions": [
+               {
+                  "type": "TripleConstraint",
+                  "id": "https://w3id.org/linkml/reportValidationReport_tes",
+                  "predicate": "https://w3id.org/linkml/reportresults",
+                  "valueExpr": "https://w3id.org/linkml/reportValidationResult",
+                  "min": 0,
+                  "max": -1
+               },
+               {
+                  "type": "TripleConstraint",
+                  "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+                  "valueExpr": {
+                     "type": "NodeConstraint",
+                     "values": [
+                        "https://w3id.org/shacl/ValidationReport"
+                     ]
+                  },
+                  "min": 0
+               }
+            ]
+         }
+      },
+      {
+         "type": "Shape",
+         "id": "https://w3id.org/linkml/reportValidationResult",
+         "closed": true,
+         "expression": {
+            "type": "EachOf",
+            "expressions": [
+               {
+                  "type": "EachOf",
+                  "id": "https://w3id.org/linkml/reportValidationResult_tes",
+                  "expressions": [
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reporttype",
+                        "valueExpr": "https://w3id.org/linkml/reportProblemType",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportseverity",
+                        "valueExpr": "https://w3id.org/linkml/reportSeverityOptions",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportsubject",
+                        "valueExpr": "https://w3id.org/linkml/Nodeidentifier",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportinstantiates",
+                        "valueExpr": "https://w3id.org/linkml/Nodeidentifier",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportpredicate",
+                        "valueExpr": "https://w3id.org/linkml/Nodeidentifier",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportobject",
+                        "valueExpr": "https://w3id.org/linkml/Nodeidentifier",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportobject_str",
+                        "valueExpr": "https://w3id.org/linkml/String",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportsource",
+                        "valueExpr": "https://w3id.org/linkml/Nodeidentifier",
+                        "min": 0,
+                        "max": 1
+                     },
+                     {
+                        "type": "TripleConstraint",
+                        "predicate": "https://w3id.org/linkml/reportinfo",
+                        "valueExpr": "https://w3id.org/linkml/String",
+                        "min": 0,
+                        "max": 1
+                     }
+                  ]
+               },
+               {
+                  "type": "TripleConstraint",
+                  "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+                  "valueExpr": {
+                     "type": "NodeConstraint",
+                     "values": [
+                        "https://w3id.org/shacl/ValidationResult"
+                     ]
+                  },
+                  "min": 0
+               }
+            ]
+         }
+      }
+   ]
+}
+
diff --git a/linkml_model/sqlddl/meta.sql b/linkml_model/sqlddl/meta.sql
index 54f1d8de..77caff15 100644
--- a/linkml_model/sqlddl/meta.sql
+++ b/linkml_model/sqlddl/meta.sql
@@ -16,6 +16,7 @@ CREATE TABLE annotation (
 
 CREATE TABLE class_definition (
 	name TEXT NOT NULL, 
+	title TEXT, 
 	definition_uri TEXT, 
 	local_names TEXT, 
 	extensions TEXT, 
@@ -32,8 +33,8 @@ CREATE TABLE class_definition (
 	abstract BOOLEAN, 
 	mixin BOOLEAN, 
 	created_by TEXT, 
-	created_on TEXT, 
-	last_updated_on TEXT, 
+	created_on DATETIME, 
+	last_updated_on DATETIME, 
 	modified_by TEXT, 
 	status TEXT, 
 	string_serialization TEXT, 
@@ -93,6 +94,7 @@ CREATE TABLE permissible_value (
 
 CREATE TABLE subset_definition (
 	name TEXT NOT NULL, 
+	title TEXT, 
 	definition_uri TEXT, 
 	local_names TEXT, 
 	extensions TEXT, 
@@ -111,6 +113,7 @@ CREATE TABLE subset_definition (
 
 CREATE TABLE type_definition (
 	name TEXT NOT NULL, 
+	title TEXT, 
 	definition_uri TEXT, 
 	local_names TEXT, 
 	extensions TEXT, 
@@ -141,6 +144,7 @@ CREATE TABLE unique_key (
 );
 
 CREATE TABLE schema_definition (
+	title TEXT, 
 	definition_uri TEXT, 
 	local_names TEXT, 
 	extensions TEXT, 
@@ -155,7 +159,6 @@ CREATE TABLE schema_definition (
 	deprecated_element_has_exact_replacement TEXT, 
 	deprecated_element_has_possible_replacement TEXT, 
 	id TEXT NOT NULL, 
-	title TEXT, 
 	version TEXT, 
 	license TEXT, 
 	default_prefix TEXT, 
@@ -166,9 +169,9 @@ CREATE TABLE schema_definition (
 	classes TEXT, 
 	metamodel_version TEXT, 
 	source_file TEXT, 
-	source_file_date TEXT, 
+	source_file_date DATETIME, 
 	source_file_size INTEGER, 
-	generation_date TEXT, 
+	generation_date DATETIME, 
 	name TEXT NOT NULL, 
 	PRIMARY KEY (name), 
 	FOREIGN KEY(default_range) REFERENCES type_definition (name)
@@ -176,6 +179,7 @@ CREATE TABLE schema_definition (
 
 CREATE TABLE slot_definition (
 	name TEXT NOT NULL, 
+	title TEXT, 
 	definition_uri TEXT, 
 	local_names TEXT, 
 	extensions TEXT, 
@@ -192,8 +196,8 @@ CREATE TABLE slot_definition (
 	abstract BOOLEAN, 
 	mixin BOOLEAN, 
 	created_by TEXT, 
-	created_on TEXT, 
-	last_updated_on TEXT, 
+	created_on DATETIME, 
+	last_updated_on DATETIME, 
 	modified_by TEXT, 
 	status TEXT, 
 	string_serialization TEXT, 
@@ -524,6 +528,7 @@ CREATE TABLE type_definition_see_also (
 
 CREATE TABLE enum_definition (
 	name TEXT NOT NULL, 
+	title TEXT, 
 	definition_uri TEXT, 
 	local_names TEXT, 
 	extensions TEXT, 
diff --git a/linkml_model/types.py b/linkml_model/types.py
index f9d16ee0..472e5476 100644
--- a/linkml_model/types.py
+++ b/linkml_model/types.py
@@ -1,5 +1,5 @@
 # Auto generated from types.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-09-17 20:25
+# Generation date: 2021-09-24 02:32
 # Schema: types
 #
 # id: https://w3id.org/linkml/types
diff --git a/linkml_model/validation.py b/linkml_model/validation.py
new file mode 100644
index 00000000..f408f230
--- /dev/null
+++ b/linkml_model/validation.py
@@ -0,0 +1,160 @@
+# Auto generated from validation.yaml by pythongen.py version: 0.9.0
+# Generation date: 2021-09-24 02:32
+# Schema: reporting
+#
+# id: https://w3id.org/linkml/reporting
+# description: A datamodel for reports on data
+# license: https://creativecommons.org/publicdomain/zero/1.0/
+
+import dataclasses
+import sys
+import re
+from jsonasobj2 import JsonObj, as_dict
+from typing import Optional, List, Union, Dict, ClassVar, Any
+from dataclasses import dataclass
+
+from linkml_runtime.utils.slot import Slot
+from linkml_runtime.utils.metamodelcore import empty_list, empty_dict, bnode
+from linkml_runtime.utils.yamlutils import YAMLRoot, extended_str, extended_float, extended_int
+from linkml_runtime.utils.dataclass_extensions_376 import dataclasses_init_fn_with_kwargs
+from linkml_runtime.utils.formatutils import camelcase, underscore, sfx
+from linkml_runtime.utils.enumerations import EnumDefinitionImpl
+from rdflib import Namespace, URIRef
+from linkml_runtime.utils.curienamespace import CurieNamespace
+from .types import Nodeidentifier, String
+from linkml_runtime.utils.metamodelcore import NodeIdentifier
+
+metamodel_version = "1.7.0"
+
+# Overwrite dataclasses _init_fn to add **kwargs in __init__
+dataclasses._init_fn = dataclasses_init_fn_with_kwargs
+
+# Namespaces
+LINKML = CurieNamespace('linkml', 'https://w3id.org/linkml/')
+OWL = CurieNamespace('owl', 'http://www.w3.org/2002/07/owl#')
+PAV = CurieNamespace('pav', 'http://purl.org/pav/')
+RDF = CurieNamespace('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#')
+RDFS = CurieNamespace('rdfs', 'http://www.w3.org/2000/01/rdf-schema#')
+REPORTING = CurieNamespace('reporting', 'https://w3id.org/linkml/report')
+SCHEMA = CurieNamespace('schema', 'http://schema.org/')
+SH = CurieNamespace('sh', 'https://w3id.org/shacl/')
+SKOS = CurieNamespace('skos', 'http://www.w3.org/2004/02/skos/core#')
+XSD = CurieNamespace('xsd', 'http://www.w3.org/2001/XMLSchema#')
+DEFAULT_ = REPORTING
+
+
+# Types
+
+# Class references
+
+
+
+@dataclass
+class ValidationReport(YAMLRoot):
+    """
+    A report object
+    """
+    _inherited_slots: ClassVar[List[str]] = []
+
+    class_class_uri: ClassVar[URIRef] = SH.ValidationReport
+    class_class_curie: ClassVar[str] = "sh:ValidationReport"
+    class_name: ClassVar[str] = "ValidationReport"
+    class_model_uri: ClassVar[URIRef] = REPORTING.ValidationReport
+
+    results: Optional[Union[Union[dict, "ValidationResult"], List[Union[dict, "ValidationResult"]]]] = empty_list()
+
+    def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
+        if not isinstance(self.results, list):
+            self.results = [self.results] if self.results is not None else []
+        self.results = [v if isinstance(v, ValidationResult) else ValidationResult(**as_dict(v)) for v in self.results]
+
+        super().__post_init__(**kwargs)
+
+
+@dataclass
+class ValidationResult(YAMLRoot):
+    """
+    An individual result arising from validation of a data instance using a particular rule
+    """
+    _inherited_slots: ClassVar[List[str]] = []
+
+    class_class_uri: ClassVar[URIRef] = SH.ValidationResult
+    class_class_curie: ClassVar[str] = "sh:ValidationResult"
+    class_name: ClassVar[str] = "ValidationResult"
+    class_model_uri: ClassVar[URIRef] = REPORTING.ValidationResult
+
+    type: Optional[Union[str, "ProblemType"]] = None
+    severity: Optional[Union[str, "SeverityOptions"]] = None
+    subject: Optional[Union[str, NodeIdentifier]] = None
+    instantiates: Optional[Union[str, NodeIdentifier]] = None
+    predicate: Optional[Union[str, NodeIdentifier]] = None
+    object: Optional[Union[str, NodeIdentifier]] = None
+    object_str: Optional[str] = None
+    source: Optional[Union[str, NodeIdentifier]] = None
+    info: Optional[str] = None
+
+    def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
+        if self.type is not None and not isinstance(self.type, ProblemType):
+            self.type = ProblemType(self.type)
+
+        if self.severity is not None and not isinstance(self.severity, SeverityOptions):
+            self.severity = SeverityOptions(self.severity)
+
+        if self.subject is not None and not isinstance(self.subject, NodeIdentifier):
+            self.subject = NodeIdentifier(self.subject)
+
+        if self.instantiates is not None and not isinstance(self.instantiates, NodeIdentifier):
+            self.instantiates = NodeIdentifier(self.instantiates)
+
+        if self.predicate is not None and not isinstance(self.predicate, NodeIdentifier):
+            self.predicate = NodeIdentifier(self.predicate)
+
+        if self.object is not None and not isinstance(self.object, NodeIdentifier):
+            self.object = NodeIdentifier(self.object)
+
+        if self.object_str is not None and not isinstance(self.object_str, str):
+            self.object_str = str(self.object_str)
+
+        if self.source is not None and not isinstance(self.source, NodeIdentifier):
+            self.source = NodeIdentifier(self.source)
+
+        if self.info is not None and not isinstance(self.info, str):
+            self.info = str(self.info)
+
+        super().__post_init__(**kwargs)
+
+
+# Enumerations
+class ProblemType(EnumDefinitionImpl):
+
+    undeclared_slot = PermissibleValue(text="undeclared_slot",
+                                                     description="Applies when a slot is used in data but the slot is undeclared in the datamodel")
+    inapplicable_slot = PermissibleValue(text="inapplicable_slot",
+                                                         description="Applies when a slot is used in an instance of a class where the slot is not applicable for that class")
+    missing_slot_value = PermissibleValue(text="missing_slot_value",
+                                                           description="Applies when an instance of a class has a required slot which is not filled in")
+    slot_range_violation = PermissibleValue(text="slot_range_violation",
+                                                               description="Applies when the value of a slot is inconsistent with the declared range")
+    parsing_error = PermissibleValue(text="parsing_error",
+                                                 description="The data could not be parsed")
+
+    _defn = EnumDefinition(
+        name="ProblemType",
+    )
+
+class SeverityOptions(EnumDefinitionImpl):
+
+    FATAL = PermissibleValue(text="FATAL")
+    ERROR = PermissibleValue(text="ERROR",
+                                 meaning=SH.Violation)
+    WARNING = PermissibleValue(text="WARNING",
+                                     meaning=SH.Warning)
+    INFO = PermissibleValue(text="INFO",
+                               meaning=SH.Info)
+
+    _defn = EnumDefinition(
+        name="SeverityOptions",
+    )
+
+# Slots
+