diff --git a/tests/test_transformer/test_biolink_subsetting.py b/tests/test_transformer/test_biolink_subsetting.py index 588ebb7..cd8bc22 100644 --- a/tests/test_transformer/test_biolink_subsetting.py +++ b/tests/test_transformer/test_biolink_subsetting.py @@ -8,6 +8,7 @@ from linkml_runtime.utils.schemaview import SchemaView from src.linkml_map.utils.loaders import load_specification from linkml_runtime.utils.formatutils import camelcase +from pprint import pprint REPO_ROOT = Path(__file__).resolve().parent.parent @@ -99,6 +100,8 @@ def test_biolink_subset_auto(biolink_schema): class_derivations = get_biolink_class_derivations(biolink_schema, SUBSET_CLASSES) + pprint(class_derivations) + ts = TransformationSpecification(class_derivations=class_derivations) mapper = SchemaMapper() @@ -108,11 +111,13 @@ def test_biolink_subset_auto(biolink_schema): target_schema_id="biolink-profile", target_schema_name="BiolinkProfile") - yaml_dumper.dump(target_schema_obj, str("biolink-profile.yaml")) + yaml_dumper.dump(target_schema_obj, str("biolink-subset.yaml")) transformed_sv = SchemaView("biolink-profile.yaml") for class_name in transformed_sv.all_classes(): print(class_name) + for slot_name in transformed_sv.all_slots(): + print(slot_name)